TCONS_00057699 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057699
Unique NameTCONS_00057699
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1740

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057699 ID=TCONS_00057699|Name=TCONS_00057699|organism=Clytia hemisphaerica|type=transcript|length=1740bp
AGAACGCATACATATCAGAACAAAGCACAGAATCAGATCAGAACATAAAC
ATAACAAAAGGAGAGAATGTCTCCTCCCACCTTCAACACCACATCAATGC
ACCATCCCAACATGACTTTCAAAAACACAACAACACCCCAATCGCTCGAT
CATTACCAACTAAATGAAATTTACAACATCATTTATATTTGCTCAATAAT
CTTTTTCACTGTTGGAATACCACCCAACATCGCGATCATCTACATTATAA
GCACAGTCCGCAAACTCGGCTCCCCAATCAATCGCGTCGTTGTCAGCCTG
GCGTTCTCAGATTGTCTCTACTTGGCATGGTACACCATAACATTATTGGA
CCAAATCTACGATTTCATCCCCTACCCTGAAAATATGGAACGCTATTTCC
TACCCTCCATCGATATGTTCATGGCAAGTGCATCAATCATGAATGTGGCA
GCATTGAGTGTAGATCGGTTGGTGGGATGCTTGTATCCTTTAAGATACGA
GAGCCTTATGGTGACCAAAGCTCCTCGTATCATTGTTTTCGCTTGGTCAT
ATTCTATCATCATCTGTTTCACATCCTTCATTCGTATGTTAATTGAAAGC
CAAGTTTACCGAATGATCGTCTTTTGTATCAGCGTTGCGTTAAGTTTCGG
TCTCCCCGTATTAACGGTCGTCATCACGTATATCATTATTCTCGTGTGCG
CGCATAAAAGTATCAAGCGCACCAAAGAGCTTCATCGATCAATCAACAGC
TCACAAAGAGAAAGCAGTTTCGATTCAAATTCCAATTTCACTGATTATAA
TCAAACAAATGCACAACGCCGCAAGAATCAAAGTTTTTACCGCGAATTCA
AAGTCACCATGATCATTCTACTTATTGTTTGCCCATTCACTTTGGGCTGG
ACCTATTACGTCGGCGCACAGATTTACGAATGGGTCTCCGGGCGCCGGTT
TACAGGGTTCTTTATGAATATCACATTCCATCTAACGCCCTCACTCGTTT
CCGCCCTTAACCCGTACATTTACTTCGTTTTGAGTAAATCTTTCAGATCA
GCCATCAAACGAAAATTTCGTAATCTTTTTCTCGAGCACCCAAATCTTTC
GAATCAATGTTGTAATAGCAATTTTCTGATTGGTCGAAAGAAGAGAGCTA
GATCCTCGCTTATTCAAATGCAAGTCACAGCAACNATCTTTCGAATCAAT
GTTGTAATAGCAATTTTCTGATTGGTCGAAAGAAGAGAGCTAGATCCTCG
CTTATTCAAATGCAAGTCACAGCAACAGCTCGCTCATCCATAACAACAAG
TACTTGTGGTTTGCCTGCACCAAAGTCTTTGTAAAAACGGATGAAAAATA
AATGTAGAAGGAATGTGAGATAGATTATTGCAGGATAGATGTCAAATGTA
TGGTATCCGTACGGTAAAATACTATTTGCTAGAGCATTATAATTGTATTG
AAAGTACCATACAGAATTTCTCTCTATCAATCTGAAAAGGTGTATGTATA
TGTACATTTAGACCTTGTTTCAGAAGAACAGAACCAGAAACGAAATTCAC
AAAACCAAAGATGTCAAAACGATTatacaaaaattgattgaaactGGAAT
AGGCTTTGAACTATATAGCGATTTTGCGCtgattgttgaaaagataatca
ggAGTAGaattttatcaaagaagaaaaaaatcaaattcttttAGAGTTGT
GCTATAATCGCTACTTTAAAGAAATCATAGAAAATCAAAC
Run BLAST on NCBI

protein sequence of TCONS_00057699-protein

>TCONS_00057699-protein ID=TCONS_00057699-protein|Name=TCONS_00057699-protein|organism=Clytia hemisphaerica|type=polypeptide|length=384bp
MSPPTFNTTSMHHPNMTFKNTTTPQSLDHYQLNEIYNIIYICSIIFFTVG
IPPNIAIIYIISTVRKLGSPINRVVVSLAFSDCLYLAWYTITLLDQIYDF
IPYPENMERYFLPSIDMFMASASIMNVAALSVDRLVGCLYPLRYESLMVT
KAPRIIVFAWSYSIIICFTSFIRMLIESQVYRMIVFCISVALSFGLPVLT
VVITYIIILVCAHKSIKRTKELHRSINSSQRESSFDSNSNFTDYNQTNAQ
RRKNQSFYREFKVTMIILLIVCPFTLGWTYYVGAQIYEWVSGRRFTGFFM
NITFHLTPSLVSALNPYIYFVLSKSFRSAIKRKFRNLFLEHPNLSNQCCN
SNFLIGRKKRARSSLIQMQVTAXIFRINVVIAIF
Run BLAST on NCBI

transcript from alignment at scaffold_297:221143..223145-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057699 ID=TCONS_00057699|Name=TCONS_00057699|organism=Clytia hemisphaerica|type=transcript|length=2003bp|location=Sequence derived from alignment at scaffold_297:221143..223145- (Clytia hemisphaerica)
AGAACGCATACATATCAGAACAAAGCACAGAATCAGATCAGAACATAAAC
AGAGAGACAAAAGGAGAGAATGTCTCCTCCCACCTTCAACACCACATCAA
TGCACCATCCCAACATGACTTTCAAAAACACAACAACACCCCAATCGCNC
TTTGTTCTTTATCATTTCAGAAGAACGCATACATATCAGAACAAAGCACA
GAATCAGATGAGAACATAAACATAACAAAAGGAGAGAATGTCTCCTCCCA
CCTTCAACACCACATCAATGCACCATCCCAACATGACTTTCAAAAACACA
ACAACACCCCAATCGNACAAAAGGAGAGAATGTCTCCTCCCACCTTCAAC
ACCACATCAATGCACCATCCCAACATGACTTTCAAAAACACAACAACACC
CCAATCGCTCGATCATTACCAACTAAATGAAATTTACAACATCATTTATA
TTTGCTCAATAATCTTTTTCACTGTTGGAATACCACCCAACATCGCGATC
ATCTACATTATAAGCACAGTCCGCAAACTCGGCTCCCCAATCAATCGCGT
CGTTGTCAGCCTGGCGTTCTCAGATTGTCTCTACTTGGCATGGTACACCA
TAACATTATTGGACCAAATCTACGATTTCATCCCCTACCCTGAAAATATG
GAACGCTATTTCCTACCCTCCATCGATATGTTCATGGCAAGTGCATCAAT
CATGAATGTGGCAGCATTGAGTGTAGATCGGTTGGTGGGATGCTTGTATC
CTTTAAGATACGAGAGCCTTATGGTGACCAAAGCTCCTCGTATCATTGTT
TTCGCTTGGTCATATTCTATCATCATCTGTTTCACATCCTTCATTCGTAT
GTTAATTGAAAGCCAAGTTTACCGAATGATCGTCTTTTGTATCAGCGTTG
CGTTAAGTTTCGGTCTCCCCGTATTAACGGTCGTCATCACGTATATCATT
ATTCTCGTGTGCGCGCATAAAAGTATCAAGCGCACCAAAGAGCTTCATCG
ATCAATCAACAGCTCACAAAGAGAAAGCAGTTTCGATTCAAATTCCAATT
TCACTGATTATAATCAAACAAATGCACAACGCCGCAAGAATCAAAGTTTT
TACCGCGAATTCAAAGTCACCATGATCATTCTACTTATTGTTTGCCCATT
CACTTTGGGCTGGACCTATTACGTCGGCGCACAGATTTACGAATGGGTCT
CCGGGCGCCGGTTTACAGGGTTCTTTATGAATATCACATTCCATCTAACG
CCCTCACTCGTTTCCGCCCTTAACCCGTACATTTACTTCGTTTTGAGTAA
ATCTTTCAGATCAGCCATCAAACGAAAATTTCGTAATCTTTTTCTCGAGC
ACCCAAATCTTTCGAATCAATGTTGTAATAGCAATTTTCTGATTGGTCGA
AAGAAGAGAGCTAGATCCTCGCTTATTCAAATGCAAGTCACAGCAACNAT
CTTTCGAATCAATGTTGTAATAGCAATTTTCTGATTGGTCGAAAGAAGAG
AGCTAGATCCTCGCTTATTCAAATGCAAGTCACAGCAACAGCTCGCTCAT
CCATAACAACAAGTACTTGTGGTTTGCCTGCACCAAAGTCTTTGTAAAAA
CGGATGAAAAATAAATGTAGAAGGAATGTGAGATAGATTATTGCAGGATA
GATGTCAAATGTATGGTATCCGTACGGTAAAATACTATTTGCTAGAGCAT
TATAATTGTATTGAAAGTACCATACAGAATTTCTCTCTATCAATCTGAAA
AGGTGTATGTATATGTACATTTAGACCTTGTTTCAGAAGAACAGAACCAG
AAACGAAATTCACAAAACCAAAGATGTCAAAACGATTATACAAAAATTGA
TTGAAACTGGAATAGGCTTTGAACTATATAGCGATTTTGCGCTGATTGTT
GAAAAGATAATCAGGAGTAGAATTTTATCAAAGAAGAAAAAAATCAAATT
CTTTTAGAGTTGTGCTATAATCGCTACTTTAAAGAAATCATAGAAAATCA
AAC

Coding sequence (CDS) from alignment at scaffold_297:221143..223145-

>TCONS_00057699 ID=TCONS_00057699|Name=TCONS_00057699|organism=Clytia hemisphaerica|type=CDS|length=2310bp|location=Sequence derived from alignment at scaffold_297:221143..223145- (Clytia hemisphaerica)
ATGACTTTCAAAAACACAACAACACCCCAATCGCTCGATCATTACCAACT
AAATGAAATTTACAACATCATTTATATTTGCTCAATAATCTTTTTCACTG
TTGGAATACCACCCAACATCGCGATCATCTACATTATAAGCACAGTCCGC
AAACTCGGCTCCCCAATCAATCGCGTCGTTGTCAGCCTGGCGTTCTCAGA
TTGTCTCTACTTGGCATGGTACACCATAACATTATTGGACCAAATCTACG
ATTTCATCCCCTACCCTGAAAATATGGAACGCTATTTCCTACCCTCCATC
GATATGTTCATGGCAAGTGCATCAATCATGAATGTGGCAGCATTGAGTGT
AGATCGGTTGGTGGGATGCTTGTATCCTTTAAGATACGAGAGCCTTATGG
TGACCAAAGCTCCTCGTATCATTGTTTTCGCTTGGTCATATTCTATCATC
ATCTGTTTCACATCCTTCATTCGTATGTTAATTGAAAGCCAAGTTTACCG
AATGATCGTCTTTTGTATCAGCGTTGCGTTAAGTTTCGGTCTCCCCGTAT
TAACGGTCGTCATCACGTATATCATTATTCTCGTGTGCGCGCATAAAAGT
ATCAAGCGCACCAAAGAGCTTCATCGATCAATCAACAGCTCACAAAGAGA
AAGCAGTTTCGATTCAAATTCCAATTTCACTGATTATAATCAAACAAATG
CACAACGCCGCAAGAATCAAAGTTTTTACCGCGAATTCAAAGTCACCATG
ATCATTCTACTTATTGTTTGCCCATTCACTTTGGGCTGGACCTATTACGT
CGGCGCACAGATTTACGAATGGGTCTCCGGGCGCCGGTTTACAGGGTTCT
TTATGAATATCACATTCCATCTAACGCCCTCACTCGTTTCCGCCCTTAAC
CCGTACATTTACTTCGTTTTGAGTAAATCTTTCAGATCAGCCATCAAACG
AAAATTTCGTAATCTTTTTCTCGAGCACCCAAATCTTTCGAATCAATGTT
GTAATAGCAATTTTCTGATTGGTCGAAAGAAGAGAGCTAGATCCTCGCTT
ATTCAAATGCAAGTCACAGCAACNATCTTTCGAATCAATGTTGTAATAGC
AATTTTCTGAATGTCTCCTCCCACCTTCAACACCACATCAATGCACCATC
CCAACATGACTTTCAAAAACACAACAACACCCCAATCGCTCGATCATTAC
CAACTAAATGAAATTTACAACATCATTTATATTTGCTCAATAATCTTTTT
CACTGTTGGAATACCACCCAACATCGCGATCATCTACATTATAAGCACAG
TCCGCAAACTCGGCTCCCCAATCAATCGCGTCGTTGTCAGCCTGGCGTTC
TCAGATTGTCTCTACTTGGCATGGTACACCATAACATTATTGGACCAAAT
CTACGATTTCATCCCCTACCCTGAAAATATGGAACGCTATTTCCTACCCT
CCATCGATATGTTCATGGCAAGTGCATCAATCATGAATGTGGCAGCATTG
AGTGTAGATCGGTTGGTGGGATGCTTGTATCCTTTAAGATACGAGAGCCT
TATGGTGACCAAAGCTCCTCGTATCATTGTTTTCGCTTGGTCATATTCTA
TCATCATCTGTTTCACATCCTTCATTCGTATGTTAATTGAAAGCCAAGTT
TACCGAATGATCGTCTTTTGTATCAGCGTTGCGTTAAGTTTCGGTCTCCC
CGTATTAACGGTCGTCATCACGTATATCATTATTCTCGTGTGCGCGCATA
AAAGTATCAAGCGCACCAAAGAGCTTCATCGATCAATCAACAGCTCACAA
AGAGAAAGCAGTTTCGATTCAAATTCCAATTTCACTGATTATAATCAAAC
AAATGCACAACGCCGCAAGAATCAAAGTTTTTACCGCGAATTCAAAGTCA
CCATGATCATTCTACTTATTGTTTGCCCATTCACTTTGGGCTGGACCTAT
TACGTCGGCGCACAGATTTACGAATGGGTCTCCGGGCGCCGGTTTACAGG
GTTCTTTATGAATATCACATTCCATCTAACGCCCTCACTCGTTTCCGCCC
TTAACCCGTACATTTACTTCGTTTTGAGTAAATCTTTCAGATCAGCCATC
AAACGAAAATTTCGTAATCTTTTTCTCGAGCACCCAAATCTTTCGAATCA
ATGTTGTAATAGCAATTTTCTGATTGGTCGAAAGAAGAGAGCTAGATCCT
CGCTTATTCAAATGCAAGTCACAGCAACNATCTTTCGAATCAATGTTGTA
ATAGCAATTTTCTGAATGTCTCCTCCCACCTTCAACACCACATCAATGCA
CCATCCCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036380XLOC_036380Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057699-proteinTCONS_00057699-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057699-exon-scaffold_297-1575043694:223102..223145TCONS_00057699-exon-scaffold_297-1575043694:223102..223145Clytia hemisphaericaexon
TCONS_00057699-exon-scaffold_297-1575043694:222864..222930TCONS_00057699-exon-scaffold_297-1575043694:222864..222930Clytia hemisphaericaexon
TCONS_00057699-exon-scaffold_297-1575043694:221143..222771TCONS_00057699-exon-scaffold_297-1575043694:221143..222771Clytia hemisphaericaexon
TCONS_00057699-exon-scaffold_297-1510915933:223102..223145TCONS_00057699-exon-scaffold_297-1510915933:223102..223145Clytia hemisphaericaexon
TCONS_00057699-exon-scaffold_297-1510915933:222864..222930TCONS_00057699-exon-scaffold_297-1510915933:222864..222930Clytia hemisphaericaexon
TCONS_00057699-exon-scaffold_297-1510915933:221143..222771TCONS_00057699-exon-scaffold_297-1510915933:221143..222771Clytia hemisphaericaexon
TCONS_00057699-exon-scaffold_297-1491911889:223102..223145TCONS_00057699-exon-scaffold_297-1491911889:223102..223145Clytia hemisphaericaexon
TCONS_00057699-exon-scaffold_297-1491911889:222864..222930TCONS_00057699-exon-scaffold_297-1491911889:222864..222930Clytia hemisphaericaexon
TCONS_00057699-exon-scaffold_297-1491911889:221143..222771TCONS_00057699-exon-scaffold_297-1491911889:221143..222771Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_297supercontigscaffold_297:221143..223145 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0262376	0.0513387	0.03125	0	0.953358	0.725175	0.624876	0.701446	0.0939091	0.879683	0	0.0160051	0.0131584	0	0.765416	0.695376	0.0246333	0	0.470503	0.557344	0.185987	0.362335	0.174158	0.133227	0	0.0339108	0.0514403	0.0524095
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057699 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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