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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057762 ID=TCONS_00057762|Name=TCONS_00057762|organism=Clytia hemisphaerica|type=transcript|length=3616bpRun BLAST on NCBI transcript from alignment at scaffold_298:60279..70823- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057762 ID=TCONS_00057762|Name=TCONS_00057762|organism=Clytia hemisphaerica|type=transcript|length=10545bp|location=Sequence derived from alignment at scaffold_298:60279..70823- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00057762 vs. Swiss-Prot (Human)
Match: ZNF84 (Zinc finger protein 84 OS=Homo sapiens GN=ZNF84 PE=1 SV=2) HSP 1 Score: 287.73 bits (735), Expect = 1.079e-82 Identity = 163/357 (45.66%), Postives = 216/357 (60.50%), Query Frame = -2
Query: 235 VKEHQTTVHDKPFTCLVCGKSFTLKSNLKVHQRTVHQGIKPFLCQECDKSFGNKTKLTSHQRTVHQGIKAFKCQDCGKCFATKRNLVRHQRTVHQGIKPFKCQECNLLFGRKYDSESHHRIVHEGIKPFECQECGESFATKRNLVMHQVTVHEGINPFECQECGKSFGSKSNLISHQRT---------------------------VHQGIKAFKCQECGESLATKRNLERHKVTVHQGLKAFECQECGLLFGRKYDLVRHHRIVHEGIKAFECQECGKSFGQQKNLTSHQRTVHQGIKPFKCQECGKSFGQKTNLTSHQRTVHQGVKPFKCQECGKSFGQKTNLTSHQRTVHQGIK 1224
+ H+T +KP+ C CGK+F+ KS L HQRT H G KP+ C EC K+F K+ L SH RT H G K + C +CG+ F+ K NL+ HQR +H G KPF+C+EC F RK +HHR H G KPF C +C ++F K L+ HQ T+H G P+EC EC K+F +S+LI+HQRT H G K F C +CG++ + K L RH+ T H G K +EC ECG F K L H RI H G K + C ECGK+F Q+ +L SHQRT H G KP++C ECGK+FG+K++L +HQRT H G KP++C++C K+F QK+ L +HQR +H G K
Sbjct: 251 ITHHRTHTGEKPYNCSQCGKAFSQKSQLTSHQRT-HTGEKPYECGECGKAFSRKSHLISHWRT-HTGEKPYGCNECGRAFSEKSNLINHQR-IHTGEKPFECRECGKAFSRKSQLVTHHR-THTGTKPFGCSDCRKAFFEKSELIRHQ-TIHTGEKPYECSECRKAFRERSSLINHQRTHTGEKPHGCIQCGKAFSQKSHLISHQMTHTGEKPFICSKCGKAFSRKSQLVRHQRT-HTGEKPYECSECGKAFSEKLSLTNHQRI-HTGEKPYVCSECGKAFCQKSHLISHQRT-HTGEKPYECSECGKAFGEKSSLATHQRT-HTGEKPYECRDCEKAFSQKSQLNTHQR-IHTGEK 597 HSP 2 Score: 284.648 bits (727), Expect = 1.439e-81 Identity = 166/361 (45.98%), Postives = 221/361 (61.22%), Query Frame = -2
Query: 235 KGSVKEHQTT-VHDKPFTCLVCGKSFTLKSNLKVHQRTVHQGIKPFLCQECDKSFGNKTKLTSHQRT---------------------------VHQGIKAFKCQDCGKCFATKRNLVRHQRTVHQGIKPFKCQECNLLFGRKYDSESHHRIVHEGIKPFECQECGESFATKRNLVMHQVTVHEGINPFECQECGKSFGSKSNLISHQRTVHQGIKAFKCQECGESLATKRNLERHKVTVHQGLKAFECQECGLLFGRKYDLVRHHRIVHEGIKAFECQECGKSFGQQKNLTSHQRTVHQGIKPFKCQECGKSFGQKTNLTSHQRTVHQGVKPFKCQECGKSFGQKTNLTSHQRTVHQGIK 1233
K S+ +HQ+ + D F C CGK+F KS H RT H G KP+ C +C K+F K++LTSHQRT H G K + C +CG+ F+ K NL+ HQR +H G KPF+C+EC F RK +HHR H G KPF C +C ++F K L+ HQ T+H G P+EC EC K+F +S+LI+HQRT H G K C +CG++ + K +L H++T H G K F C +CG F RK LVRH R H G K +EC ECGK+F ++ +LT+HQR +H G KP+ C ECGK+F QK++L SHQRT H G KP++C ECGK+FG+K++L +HQRT H G K
Sbjct: 219 KPSLIKHQSRHIRDIAFGCGNCGKTFPQKSQFITHHRT-HTGEKPYNCSQCGKAFSQKSQLTSHQRTHTGEKPYECGECGKAFSRKSHLISHWRTHTGEKPYGCNECGRAFSEKSNLINHQR-IHTGEKPFECRECGKAFSRKSQLVTHHR-THTGTKPFGCSDCRKAFFEKSELIRHQ-TIHTGEKPYECSECRKAFRERSSLINHQRT-HTGEKPHGCIQCGKAFSQKSHLISHQMT-HTGEKPFICSKCGKAFSRKSQLVRHQR-THTGEKPYECSECGKAFSEKLSLTNHQR-IHTGEKPYVCSECGKAFCQKSHLISHQRT-HTGEKPYECSECGKAFGEKSSLATHQRT-HTGEK 569 HSP 3 Score: 274.633 bits (701), Expect = 4.023e-78 Identity = 156/328 (47.56%), Postives = 207/328 (63.11%), Query Frame = -2
Query: 253 KGSVKEHQTT-VHDKPFTCLVCGKSFTLKSNLKVHQRTVHQGIKPFLCQECDKSFGNKTKLTSHQRTVHQGIKAFKCQDCGKCFATKRNLVRHQRTVHQGIKPFKCQECNLLFGRKYDSESHHRIVHEGIKPFECQECGESFATKRNLVMHQVTVHEGINPFECQECGKSFGSKSNLISHQRTVHQGIKAFKCQECGESLATKRNLERHKVTVHQGLKAFECQECGLLFGRKYDLVRHHRIVHEGIKAFECQECGKSFGQQKNLTSHQRTVHQGIKPFKCQECGKSFGQKTNLTSHQRTVHQGVKPFKCQECGKSFGQKTNLTSHQRT 1233
+ S+ HQ T +KP C+ CGK+F+ KS+L HQ T H G KPF+C +C K+F K++L HQRT H G K ++C +CGK F+ K +L HQR +H G KP+ C EC F +K SH R H G KP+EC ECG++F K +L HQ T H G P+EC++C K+F KS L +HQR +H G K ++C C ++ K L RH + H G K +EC EC F K L+ H RI H G K FEC ECGK+F ++ +L HQRT H G KP+ C EC K+F QK+ L +HQR +H G KP++C ECGK+F QK+ L +HQRT
Sbjct: 415 RSSLINHQRTHTGEKPHGCIQCGKAFSQKSHLISHQMT-HTGEKPFICSKCGKAFSRKSQLVRHQRT-HTGEKPYECSECGKAFSEKLSLTNHQR-IHTGEKPYVCSECGKAFCQKSHLISHQR-THTGEKPYECSECGKAFGEKSSLATHQRT-HTGEKPYECRDCEKAFSQKSQLNTHQR-IHTGEKPYECSLCRKAFFEKSELIRH-LRTHTGEKPYECNECRKAFREKSSLINHQRI-HTGEKPFECSECGKAFSRKSHLIPHQRT-HTGEKPYGCSECRKAFSQKSQLVNHQR-IHTGEKPYRCIECGKAFSQKSQLINHQRT 732 HSP 4 Score: 264.233 bits (674), Expect = 1.264e-74 Identity = 158/384 (41.15%), Postives = 214/384 (55.73%), Query Frame = -2
Query: 235 VKEHQTTVHDKPFTCLVCGKSFTLKSNLKVHQRTVHQGIKPFLCQECDKSFGNKTKLTSHQRTVHQGIKAFKCQDCGKCFATKRNLVRHQRTVHQGIKPFKCQECNLLF------------------------GRKYDSESH---HRIVHEGIKPFECQECGESFATKRNLVMHQVTVHEGINPFECQECGKSFGSKSNLISHQRTVHQGIKAFKCQECGESLATKRNLERHKVTVHQGLKAFECQECGLLFGRKYDLVRHHRIVHEGIKAFECQECGKSFGQQKNLTSHQRT---------------------------VHQGIKPFKCQECGKSFGQKTNLTSHQRTVHQGVKPFKCQECGKSFGQKTNLTSHQRTVHQGIK 1224
+ +T +KP+ C CG++F+ KSNL HQR +H G KPF C+EC K+F K++L +H RT H G K F C DC K F K L+RHQ T+H G KP++C EC F G+ + +SH H++ H G KPF C +CG++F+ K LV HQ T H G P+EC ECGK+F K +L +HQR +H G K + C ECG++ K +L H+ T H G K +EC ECG FG K L H R H G K +EC++C K+F Q+ L +HQR H G KP++C EC K+F +K++L +HQR +H G KPF+C ECGK+F +K++L HQRT H G K
Sbjct: 307 ISHWRTHTGEKPYGCNECGRAFSEKSNLINHQR-IHTGEKPFECRECGKAFSRKSQLVTHHRT-HTGTKPFGCSDCRKAFFEKSELIRHQ-TIHTGEKPYECSECRKAFRERSSLINHQRTHTGEKPHGCIQCGKAFSQKSHLISHQMTHTGEKPFICSKCGKAFSRKSQLVRHQRT-HTGEKPYECSECGKAFSEKLSLTNHQR-IHTGEKPYVCSECGKAFCQKSHLISHQRT-HTGEKPYECSECGKAFGEKSSLATHQR-THTGEKPYECRDCEKAFSQKSQLNTHQRIHTGEKPYECSLCRKAFFEKSELIRHLRTHTGEKPYECNECRKAFREKSSLINHQR-IHTGEKPFECSECGKAFSRKSHLIPHQRT-HTGEK 681 HSP 5 Score: 167.162 bits (422), Expect = 9.693e-45 Identity = 94/206 (45.63%), Postives = 128/206 (62.14%), Query Frame = -2
Query: 235 GIKPFECQECGESFATKRNLVMHQVTVHEGINPFECQECGKSFGSKSNLISHQRTVHQGIKAFKCQECGESLATKRNLERHKVTVHQGLKAFECQECGLLFGRKYDLVRHHRIVHEGIKAFECQECGKSFGQQKNLTSHQRTVHQGIKPFKCQECGKSFGQKTNLTSHQRTVHQGVKPFKCQECGKSFGQKTNLTSHQRTVHQGIK 852
G K +EC EC + F+ K +L+ HQ + H F C CGK+F KS I+H RT H G K + C +CG++ + K L H+ T H G K +EC ECG F RK L+ H R H G K + C ECG++F ++ NL +HQR +H G KPF+C+ECGK+F +K+ L +H RT H G KPF C +C K+F +K+ L HQ T+H G K
Sbjct: 203 GEKLYECSECRKRFSKKPSLIKHQ-SRHIRDIAFGCGNCGKTFPQKSQFITHHRT-HTGEKPYNCSQCGKAFSQKSQLTSHQRT-HTGEKPYECGECGKAFSRKSHLISHWR-THTGEKPYGCNECGRAFSEKSNLINHQR-IHTGEKPFECRECGKAFSRKSQLVTHHRT-HTGTKPFGCSDCRKAFFEKSELIRHQ-TIHTGEK 401 HSP 6 Score: 33.8834 bits (76), Expect = 9.693e-45 Identity = 19/46 (41.30%), Postives = 25/46 (54.35%), Query Frame = -1
Query: 89 CRKCGKSFRQKTTITSHKNLTSH*STVHRGIKSFKCQECGKYFLEK 226
C +CGK+F QK+ + SH+ H G K F C +CGK F K
Sbjct: 433 CIQCGKAFSQKSHLISHQ-------MTHTGEKPFICSKCGKAFSRK 471 HSP 7 Score: 162.54 bits (410), Expect = 5.311e-41 Identity = 111/310 (35.81%), Postives = 158/310 (50.97%), Query Frame = -2
Query: 2122 KPFKCNECGERFYQESTLTRHKGIHKGYK-YRCKQCDKGYNAKNALIQHHKDLHKDLKSFKCDKCHKAFSSETYLTIHQRSVHEGVKPFECQVCGKCFALKRQLTSHHRFVHEGIKPYKCQECGKCFARKSYLKRHKLLVHDEIKDFECQE----------------------------CGKCFATKGNLKRHKLTVHDGI*AFVCQEYGKSFAEKRNLTLHQRTIHQG*KTXXXXXXXXXXLQRFIFKNLKEL-SMIKPFECQNYGNTFAEKGSL*EHQRKAHDKIYTFQCHECGQSFAFRFFLQRRQK 2961
KP+ C++CG+ F Q+S LT H+ H G K Y C +C K ++ K+ LI H + H K + C++C +AFS ++ L HQR +H G KPFEC+ CGK F+ K QL +HHR H G KP+ C +C K F KS L RH+ +H K +EC E CGK F+ K +L H++T H G F+C + GK+F+ K L HQRT H G K ++ N + + + KP+ C G F +K L HQR H ++C ECG++F + L Q+
Sbjct: 261 KPYNCSQCGKAFSQKSQLTSHQRTHTGEKPYECGECGKAFSRKSHLISHWR-THTGEKPYGCNECGRAFSEKSNLINHQR-IHTGEKPFECRECGKAFSRKSQLVTHHR-THTGTKPFGCSDCRKAFFEKSELIRHQ-TIHTGEKPYECSECRKAFRERSSLINHQRTHTGEKPHGCIQCGKAFSQKSHLISHQMT-HTGEKPFICSKCGKAFSRKSQLVRHQRT-HTGEKPYECSECGKAFSEKLSLTNHQRIHTGEKPYVCSECGKAFCQKSHLISHQR-THTGEKPYECSECGKAFGEKSSLATHQR 563 HSP 8 Score: 153.295 bits (386), Expect = 4.912e-38 Identity = 102/253 (40.32%), Postives = 140/253 (55.34%), Query Frame = -2
Query: 2209 KPFKCNECGERFYQESTLTRHKGIHKGYK-YRCKQCDKGYNAKNALIQHHKDLHKDLKSFKCDKCHKAFSSETYLTIHQRSVHEGVKPFECQVCGKCFALKRQLTSHHRFVHEGIKPYKCQECGKCFARKSYLKRHKLLVHDEIKDFECQECGKCFATKGNLKRHKLTVHDGI*AFVCQEYGKSFAEKRNLTLHQRTIHQG*KTXXXXXXXXXXLQRFIFKNLKEL-SMIKPFECQNYGNTFAEKGSL*EHQR 2961
KP++C+ECG+ F ++ +LT H+ IH G K Y C +C K + K+ LI H + H K ++C +C KAF ++ L HQR+ H G KP+EC+ C K F+ K QL +H R +H G KPY+C C K F KS L RH L H K +EC EC K F K +L H+ +H G F C E GK+F+ K +L HQRT H G K Q+ N + + + KP+ C G F++K L HQR
Sbjct: 485 KPYECSECGKAFSEKLSLTNHQRIHTGEKPYVCSECGKAFCQKSHLISHQR-THTGEKPYECSECGKAFGEKSSLATHQRT-HTGEKPYECRDCEKAFSQKSQLNTHQR-IHTGEKPYECSLCRKAFFEKSELIRH-LRTHTGEKPYECNECRKAFREKSSLINHQ-RIHTGEKPFECSECGKAFSRKSHLIPHQRT-HTGEKPYGCSECRKAFSQKSQLVNHQRIHTGEKPYRCIECGKAFSQKSQLINHQR 731 HSP 9 Score: 147.902 bits (372), Expect = 3.276e-36 Identity = 107/299 (35.79%), Postives = 150/299 (50.17%), Query Frame = -2
Query: 2071 KPFKCNECGERFYQESTLTRHKGIHKGYK-YRCKQCDKGYNAKNALIQHHKDLHKDLKSFKCDKCHKAFSSETYLTIHQRSVHEGVKPFECQVCGKCFALKRQLTSHHRFVHEGIKPYKCQECGKCFARKSYLKRHKLLVHDEIKDFECQECGKCFATKGNLKRHKLTVHDGI*AFVCQEYGKSFAEKRNLTLHQRTIHQG*KTXXXXXXXXXXLQRFIFKNLKEL-SMIKPFECQNYGNTFAEKGSL*EHQRKAHDKIYTFQCHECGQSFAFRFFLQRRQKDVNERMKALCVKVLQTF 2961
KP C +CG+ F Q+S L H+ H G K + C +C K ++ K+ L++H + H K ++C +C KAFS + LT HQR +H G KP+ C CGK F K L SH R H G KPY+C ECGK F KS L H+ H K +EC++C K F+ K L H+ +H G + C K+F EK L H RT H G K ++ N + + + KPFEC G F+ K L HQR H + C EC ++F+ + L Q+ C++ + F
Sbjct: 429 KPHGCIQCGKAFSQKSHLISHQMTHTGEKPFICSKCGKAFSRKSQLVRHQR-THTGEKPYECSECGKAFSEKLSLTNHQR-IHTGEKPYVCSECGKAFCQKSHLISHQR-THTGEKPYECSECGKAFGEKSSLATHQ-RTHTGEKPYECRDCEKAFSQKSQLNTHQ-RIHTGEKPYECSLCRKAFFEKSELIRHLRT-HTGEKPYECNECRKAFREKSSLINHQRIHTGEKPFECSECGKAFSRKSHLIPHQR-THTGEKPYGCSECRKAFSQKSQLVNHQRIHTGEKPYRCIECGKAF 720 HSP 10 Score: 144.821 bits (364), Expect = 2.961e-35 Identity = 103/308 (33.44%), Postives = 153/308 (49.68%), Query Frame = -2
Query: 2059 DYDQSIKPFKCNECGERFYQESTLTRHKGIHKGYKYRCKQCDKGYNAKNALIQHHKDLHKDLKSFKCDKCHKAFSSETYLTIHQRSVHEGVKPFECQVCGKCFALKRQLTSHHRFVHEGIKPYKCQECGKCFARKSYLKRHKLLVHDEIKDFECQECGKCFATKGNLKRHKLTVHDGI*AFVCQEYGKSFAEKRNLTLHQRTIHQG*KTXXXXXXXXXXLQRF-IFKNLKELSMIKPFECQNYGNTFAEKGSL*EHQRKAHDKIYTFQCHECGQSFAFRFFLQRRQKDVNERMKALCVKVLQTFCREN 2979
D D +K + C++ E + + + H+ Y C +C K ++ K +LI+H +D+ +F C C K F ++ H R+ H G KP+ C CGK F+ K QLTSH R H G KPY+C ECGK F+RKS+L H H K + C ECG+ F+ K NL H+ +H G F C+E GK+F+ K L H RT H G K + ++ + ++ + KP+EC F E+ SL HQR H C +CG++F+ + L Q +C K + F R++
Sbjct: 172 DTDTWLKYYDCDKYKESYKKSQIIIYHRNRLGEKLYECSECRKRFSKKPSLIKHQSRHIRDI-AFGCGNCGKTFPQKSQFITHHRT-HTGEKPYNCSQCGKAFSQKSQLTSHQR-THTGEKPYECGECGKAFSRKSHLISH-WRTHTGEKPYGCNECGRAFSEKSNLINHQ-RIHTGEKPFECRECGKAFSRKSQLVTHHRT-HTGTKPFGCSDCRKAFFEKSELIRHQTIHTGEKPYECSECRKAFRERSSLINHQR-THTGEKPHGCIQCGKAFSQKSHLISHQMTHTGEKPFICSKCGKAFSRKS 472 HSP 11 Score: 134.806 bits (338), Expect = 3.799e-32 Identity = 81/197 (41.12%), Postives = 117/197 (59.39%), Query Frame = -2
Query: 2374 KPFKCNECGERFYQESTLTRHKGIHKGYK-YRCKQCDKGYNAKNALIQHHKDLHKDLKSFKCDKCHKAFSSETYLTIHQRSVHEGVKPFECQVCGKCFALKRQLTSHHRFVHEGIKPYKCQECGKCFARKSYLKRHKLLVHDEIKDFECQECGKCFATKGNLKRHKLTVHDGI*AFVCQEYGKSFAEKRNLTLHQRT 2961
KP++C+ECG+ F ++S+L H+ H G K Y C+ C+K ++ K+ L H + +H K ++C C KAF ++ L H R+ H G KP+EC C K F K L +H R +H G KP++C ECGK F+RKS+L H+ H K + C EC K F+ K L H+ +H G + C E GK+F++K L HQRT
Sbjct: 541 KPYECSECGKAFGEKSSLATHQRTHTGEKPYECRDCEKAFSQKSQLNTHQR-IHTGEKPYECSLCRKAFFEKSELIRHLRT-HTGEKPYECNECRKAFREKSSLINHQR-IHTGEKPFECSECGKAFSRKSHLIPHQ-RTHTGEKPYGCSECRKAFSQKSQLVNHQ-RIHTGEKPYRCIECGKAFSQKSQLINHQRT 732 HSP 12 Score: 107.071 bits (266), Expect = 1.738e-28 Identity = 64/147 (43.54%), Postives = 88/147 (59.86%), Query Frame = -2
Query: 235 IKAFKCQECGESLATKRNLERHKVTVHQGLKAFECQECGLLFGRKYDLVRHHRIVHEGIKAFECQECGKSFGQQKNLTSHQRTVHQGIKPFKCQECGKSFGQKTNLTSHQRTVHQGVKPFKCQECGKSFGQKTNLTSHQRTVHQGIK 675
+K + C + ES + + H+ + G K +EC EC F +K L++H I AF C CGK+F Q+ +H RT H G KP+ C +CGK+F QK+ LTSHQRT H G KP++C ECGK+F +K++L SH RT H G K
Sbjct: 177 LKYYDCDKYKESYKKSQIIIYHRNRL--GEKLYECSECRKRFSKKPSLIKHQSRHIRDI-AFGCGNCGKTFPQKSQFITHHRT-HTGEKPYNCSQCGKAFSQKSQLTSHQRT-HTGEKPYECGECGKAFSRKSHLISHWRT-HTGEK 317 HSP 13 Score: 38.1206 bits (87), Expect = 1.738e-28 Identity = 18/50 (36.00%), Postives = 29/50 (58.00%), Query Frame = -1
Query: 89 KGVNCRKCGKSFRQKTTITSHKNLTSH*STVHRGIKSFKCQECGKYFLEK 238
K C +CG++F +K+ + +H+ +H G K F+C+ECGK F K
Sbjct: 317 KPYGCNECGRAFSEKSNLINHQR-------IHTGEKPFECRECGKAFSRK 359 HSP 14 Score: 21.557 bits (44), Expect = 1.738e-28 Identity = 13/33 (39.39%), Postives = 16/33 (48.48%), Query Frame = -3
Query: 3 FFRKRN*TSHQRFAHQGIRAFKCPEFFKCFVEK 101
F RK +H R H G + F C + K F EK
Sbjct: 356 FSRKSQLVTHHR-THTGTKPFGCSDCRKAFFEK 387 The following BLAST results are available for this feature:
BLAST of TCONS_00057762 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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