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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057739 ID=TCONS_00057739|Name=TCONS_00057739|organism=Clytia hemisphaerica|type=transcript|length=2216bpRun BLAST on NCBI transcript from alignment at scaffold_298:140825..155170+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057739 ID=TCONS_00057739|Name=TCONS_00057739|organism=Clytia hemisphaerica|type=transcript|length=14346bp|location=Sequence derived from alignment at scaffold_298:140825..155170+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00057739 vs. Swiss-Prot (Human)
Match: TCPA (T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1) HSP 1 Score: 436.032 bits (1120), Expect = 2.151e-143 Identity = 209/296 (70.61%), Postives = 249/296 (84.12%), Query Frame = 2
Query: 1091 PSKIGRCQAKRSRHYKRENTKILSSGANVILLSGGVDDLCMKYFVEAGAMAVRRVKKADLKRIARATGGTVCLSLANLEGEESFDTSLLGHSEEVVQERICDDELILIKNPKTRPAASIILRGANDYMCDEMERSIHDALCVVKRVMESKSIVPGGGCVEAALSIYLENFATSLASREQLAIAEFANSLLVIPKTLTVNAAKDSADLVAKLRAYHNASQVQPEKANLKWVGLDLINGTIRDNKKAGVLEPAMSKIKCLKFATEAAITILRIDDMVKLEPDKKDD--NTYQAARAAG 1972
P K+ + + + S K KIL++GANVIL +GG+DD+C+KYFVEAGAMAVRRV K DLKRIA+A+G T+ +LANLEGEE+F+ ++LG +EEVVQERICDDELILIKN K R +ASIILRGAND+MCDEMERS+HDALCVVKRV+ESKS+VPGGG VEAALSIYLEN+ATS+ SREQLAIAEFA SLLVIP TL VNAA+DS DLVAKLRA+HN +QV PE+ NLKW+GLDL NG RDNK+AGV EP + K+K LKFATEAAITILRIDD++KL P+ KDD +Y+ A +G
Sbjct: 257 PEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEAAMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLSNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDDKHGSYEDAVHSG 552 HSP 2 Score: 237.269 bits (604), Expect = 2.548e-98 Identity = 113/144 (78.47%), Postives = 130/144 (90.28%), Query Frame = 2
Query: 404 ITGDRTSGNEIREQNVMAASSIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILCELADLQDQEVGDGTTSVVIIAAELLKNATNLLRYKLHPTSIISGYRLACKEACKYIQENIAMSTTDLDREAFLN 835
+ GDR++G IR QNVMAA+SIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAK+LCELADLQD+EVGDGTTSVVIIAAELLKNA L++ K+HPTS+ISGYRLACKEA +YI EN+ ++T +L R+ +N
Sbjct: 7 VFGDRSTGETIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIVNTDELGRDCLIN 150 HSP 3 Score: 142.124 bits (357), Expect = 2.548e-98 Identity = 67/109 (61.47%), Postives = 83/109 (76.15%), Query Frame = 3
Query: 834 MVVDAANAVKKTGSKGETKVPIKAINVLKAHGGNMKESILVSGYALNCVVACEGMPKKVSGAKIAFLDFSLMKAKMNLGVLVQIEDPAKLDAVRQREADITKERIQKYF 1160
MVVDA A+K T +G+ + P+ ++N+LKAHG + ES+L+SGYALNCVV +GMPK++ AKIA LDFSL K KM LGV V I DP KLD +RQRE+DITKERIQK
Sbjct: 171 MVVDAVLAIKYTDIRGQPRYPVNSVNILKAHGRSQMESMLISGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKIL 279 The following BLAST results are available for this feature:
BLAST of TCONS_00057739 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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