TCONS_00057844 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057844
Unique NameTCONS_00057844
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length758

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057844 ID=TCONS_00057844|Name=TCONS_00057844|organism=Clytia hemisphaerica|type=transcript|length=758bp
ttgcaattttCACGATATCGAGTATGAAAAATCTTCGCAAATCATTCAGT
GATTGGTTATTGTTGATACTTTTCACATCACATTTATtggcagccatttt
gaatatCATGTGCGCATGCTTAACAAATCACCCAATCGAAACACAGAATT
TTGTTTGGTATGTACGTGAGATTGCAGTAGGCCTAGAAATTAATTACACC
ATTTTGATATCATTTATATATATGAGAGATTTATTGCCATTCGTAAACCA
TTTTTGTATGCACAACTTGGTAAAACTCATGCTGTGTCAGCCATTTTGAA
TCCTATATTTGTTGTTGTGTGTTATGCCACTTGGAGATACTATTCTATGA
CAGCATATTACATCGCTAGCCTAATCACTATATCTGGAGGTCTTGCAATC
TTCATTTCGAGCATTTTTCTGTATCGTTCTGTTAGCCGACAATGTGAAGg
aatcaccagaaccatcattgATGCTTCCCAGAAAGTACAAATCAAGAAAC
GAGATAGcgtgagaaaacgaaagttaaaatcCTTGAAAATATGCATCTGT
ATTACAGCTTCGTATCTTTTGACTTAGTTCCCATTGATAGCACTTATTAA
TGTACAATTTTGTTTGGGTTTCAGTGTCGATTGGCAATTTCTTTTGTTAA
CTTTTGCTGGCACCAACGGCTTCTGAGatgttttgatatatttttaccTG
AATGAAAGAGCAAGAAAAAGGCTTTATCACCTCTTGAGTGTTCGGAAGAA
TGTTGTGG
Run BLAST on NCBI

transcript from alignment at scaffold_299:131665..132422

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057844 ID=TCONS_00057844|Name=TCONS_00057844|organism=Clytia hemisphaerica|type=transcript|length=758bp|location=Sequence derived from alignment at scaffold_299:131665..132422 (Clytia hemisphaerica)
CCACAACATTCTTCCGAACACTCAAGAGGTGATAAAGCCTTTTTCTTGCT
CTTTCATTCAggtaaaaatatatcaaaacatCTCAGAAGCCGTTGGTGCC
AGCAAAAGTTAACAAAAGAAATTGCCAATCGACACTGAAACCCAAACAAA
ATTGTACATTAATAAGTGCTATCAATGGGAACTAAGTCAAAAGATACGAA
GCTGTAATACAGATGCATATTTTCAAGgattttaactttcgttttctcac
gCTATCTCGTTTCTTGATTTGTACTTTCTGGGAAGCATcaatgatggttc
tggtgattcCTTCACATTGTCGGCTAACAGAACGATACAGAAAAATGCTC
GAAATGAAGATTGCAAGACCTCCAGATATAGTGATTAGGCTAGCGATGTA
ATATGCTGTCATAGAATAGTATCTCCAAGTGGCATAACACACAACAACAA
ATATAGGATTCAAAATGGCTGACACAGCATGAGTTTTACCAAGTTGTGCA
TACAAAAATGGTTTACGAATGGCAATAAATCTCTCATATATATAAATGAT
ATCAAAATGGTGTAATTAATTTCTAGGCCTACTGCAATCTCACGTACATA
CCAAACAAAATTCTGTGTTTCGATTGGGTGATTTGTTAAGCATGCGCACA
TGatattcaaaatggctgccaATAAATGTGATGTGAAAAGTATCAACAAT
AACCAATCACTGAATGATTTGCGAAGATTTTTCATACTCGATATCGTGaa
aattgcaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036464XLOC_036464Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057844-exon-scaffold_299-1491911889:131665..132422TCONS_00057844-exon-scaffold_299-1491911889:131665..132422Clytia hemisphaericaexon
TCONS_00057844-exon-scaffold_299-1510915933:131665..132422TCONS_00057844-exon-scaffold_299-1510915933:131665..132422Clytia hemisphaericaexon
TCONS_00057844-exon-scaffold_299-1575043694:131665..132422TCONS_00057844-exon-scaffold_299-1575043694:131665..132422Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_299supercontigscaffold_299:131665..132422 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.129245	0.126034	0.0731689	0	0	0	0.498494	1.71118	0.653473	0.809432	0.982069	0.47342	0.128935	0	0	0.0393791	0.242559	0.0994462	0.13739	0.359423	0.0624807	0	0.14819	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057844 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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