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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057876 ID=TCONS_00057876|Name=TCONS_00057876|organism=Clytia hemisphaerica|type=transcript|length=1332bp
GCATTTTATAGCTCTTTTTAGATCCTGAAGCTTATAAAGATTTATATAAG
TTATAAAAGTTATAAACCTTTTGTTAACAAATTTGGAAACATGGACTACA
AATCAAATGCATTGAAAAGGCATTACAGAAATAAGCAAAAATAGATCTTT
CCGACTTTCTAAGGgaacaattttctaaaaatatctaACACATGTTATTT
ATTCATGTTTTTGCAACAGAGACGAGATGCTTAACGTTTAAACATtacaa
attcataaaaattatacaaaacaaaactgaaatttAGATCAGATCCCTAG
CTTGGTAATGACCTTCCTTGCTAATTTTTCACTATAAGTATTAATTTTCC
AATGCCCAGGGCTCCATCCTAAAAGAAACCGATGAAAATCTGTCCATGCT
ATTGGAAAAAGTTTCCTCCATTCATTTTCTAGGTTTTCAACATTTAAATT
AGGATGATGCTTCAGAGTTGCTGATTTTAGAACTGCAAAGTAAACATGGA
GGAGTTCACTTTCCCTGGACTCACACTCTTTTTCATCTAGAATACTTCCA
ATAAAATAAACAACATCCTTCATACCACAGCCACCACCTACATATTGAAA
ATCAACTGCAGCTACAGCTGTGTCACttgttgaaaaacaaaaattagctA
CTTTTGCATCACCATGAACTAGAGTTTTGAACTGACATTCATTCAATATT
TGGTCAATCATAGGTGCAGCTTCCTTTAGTTTTGGATGATCCATTTTTTC
AAGTTCATCGGGGCGAGTCTCTAAATGCCAATAAGTACCTATTCCCCATA
AACTGTCTGGTTTAGTACCTAGAAAAACTGCATGGAAATTTGCTAGCCAA
GAAAGACAAGCATatatctgattggttgataaCGAAGAATGGCGTAAGGG
AAATCCTGCAGCATCTAAATCTTCCAAGACAATCATATGTTGACTATCTT
TAGATTTTGTGGCATAACATTTTGGTACGCGACAAGATTCATTGCACTTA
TCTGCATAATTTTTATACCAGGCCATTTCTACTTCATAAGATTTTAATTT
ACGTTGGTGCCCACGATTTGTATTCCATCCTTGTGGATGGTTTGTTCGTG
TTGGAAGTgctatattttttattattattgaaGATTGCGAAGCTCCTTCT
AGTTTCATACGAGCTATTTCTCCATAACCACTCCATAAAGATTGAATTGA
TTCAATTTTATTGGCTGACTTTGCTCCAGTCACATTTAATAAAACACTTT
CAAACTCTGGTATAAGTGCCATCATGGttttgcttttttctaatttttaa
ttaacctatgaaaatacaaaagtaaatcaaca Run BLAST on NCBI protein sequence of TCONS_00057876-protein >TCONS_00057876-protein ID=TCONS_00057876-protein|Name=TCONS_00057876-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
MMALIPEFESVLLNVTGAKSANKIESIQSLWSGYGEIARMKLEGASQSSI
IIKNIALPTRTNHPQGWNTNRGHQRKLKSYEVEMAWYKNYADKCNESCRV
PKCYATKSKDSQHMIVLEDLDAAGFPLRHSSLSTNQIYACLSWLANFHAV
FLGTKPDSLWGIGTYWHLETRPDELEKMDHPKLKEAAPMIDQILNECQFK
TLVHGDAKVANFCFSTSDTAVAAVDFQYVGGGCGMKDVVYFIGSILDEKE
CESRESELLHVYFAVLKSATLKHHPNLNVENLENEWRKLFPIAWTDFHRF
LLGWSPGHWKINTYSEKLARKVITKLGI Run BLAST on NCBI transcript from alignment at scaffold_30:16244..17575 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057876 ID=TCONS_00057876|Name=TCONS_00057876|organism=Clytia hemisphaerica|type=transcript|length=1332bp|location=Sequence derived from alignment at scaffold_30:16244..17575 (Clytia hemisphaerica)
tgttgatttacttttgtattttcataggttaattaaaaattagaaaaaag
caaaaCCATGATGGCACTTATACCAGAGTTTGAAAGTGTTTTATTAAATG
TGACTGGAGCAAAGTCAGCCAATAAAATTGAATCAATTCAATCTTTATGG
AGTGGTTATGGAGAAATAGCTCGTATGAAACTAGAAGGAGCTTCGCAATC
ttcaataataataaaaaatatagcACTTCCAACACGAACAAACCATCCAC
AAGGATGGAATACAAATCGTGGGCACCAACGTAAATTAAAATCTTATGAA
GTAGAAATGGCCTGGTATAAAAATTATGCAGATAAGTGCAATGAATCTTG
TCGCGTACCAAAATGTTATGCCACAAAATCTAAAGATAGTCAACATATGA
TTGTCTTGGAAGATTTAGATGCTGCAGGATTTCCCTTACGCCATTCTTCG
ttatcaaccaatcagatatATGCTTGTCTTTCTTGGCTAGCAAATTTCCA
TGCAGTTTTTCTAGGTACTAAACCAGACAGTTTATGGGGAATAGGTACTT
ATTGGCATTTAGAGACTCGCCCCGATGAACTTGAAAAAATGGATCATCCA
AAACTAAAGGAAGCTGCACCTATGATTGACCAAATATTGAATGAATGTCA
GTTCAAAACTCTAGTTCATGGTGATGCAAAAGTagctaatttttgttttt
caacaaGTGACACAGCTGTAGCTGCAGTTGATTTTCAATATGTAGGTGGT
GGCTGTGGTATGAAGGATGTTGTTTATTTTATTGGAAGTATTCTAGATGA
AAAAGAGTGTGAGTCCAGGGAAAGTGAACTCCTCCATGTTTACTTTGCAG
TTCTAAAATCAGCAACTCTGAAGCATCATCCTAATTTAAATGTTGAAAAC
CTAGAAAATGAATGGAGGAAACTTTTTCCAATAGCATGGACAGATTTTCA
TCGGTTTCTTTTAGGATGGAGCCCTGGGCATTGGAAAATTAATACTTATA
GTGAAAAATTAGCAAGGAAGGTCATTACCAAGCTAGGGATCTGATCTaaa
tttcagttttgttttgtataatttttatgaatttgtaATGTTTAAACGTT
AAGCATCTCGTCTCTGTTGCAAAAACATGAATAAATAACATGTGTtagat
atttttagaaaattgttcCCTTAGAAAGTCGGAAAGATCTATTTTTGCTT
ATTTCTGTAATGCCTTTTCAATGCATTTGATTTGTAGTCCATGTTTCCAA
ATTTGTTAACAAAAGGTTTATAACTTTTATAACTTATATAAATCTTTATA
AGCTTCAGGATCTAAAAAGAGCTATAAAATGC Coding sequence (CDS) from alignment at scaffold_30:16244..17575 >TCONS_00057876 ID=TCONS_00057876|Name=TCONS_00057876|organism=Clytia hemisphaerica|type=CDS|length=987bp|location=Sequence derived from alignment at scaffold_30:16244..17575 (Clytia hemisphaerica)
ATGATGGCACTTATACCAGAGTTTGAAAGTGTTTTATTAAATGTGACTGG
AGCAAAGTCAGCCAATAAAATTGAATCAATTCAATCTTTATGGAGTGGTT
ATGGAGAAATAGCTCGTATGAAACTAGAAGGAGCTTCGCAATCttcaata
ataataaaaaatatagcACTTCCAACACGAACAAACCATCCACAAGGATG
GAATACAAATCGTGGGCACCAACGTAAATTAAAATCTTATGAAGTAGAAA
TGGCCTGGTATAAAAATTATGCAGATAAGTGCAATGAATCTTGTCGCGTA
CCAAAATGTTATGCCACAAAATCTAAAGATAGTCAACATATGATTGTCTT
GGAAGATTTAGATGCTGCAGGATTTCCCTTACGCCATTCTTCGttatcaa
ccaatcagatatATGCTTGTCTTTCTTGGCTAGCAAATTTCCATGCAGTT
TTTCTAGGTACTAAACCAGACAGTTTATGGGGAATAGGTACTTATTGGCA
TTTAGAGACTCGCCCCGATGAACTTGAAAAAATGGATCATCCAAAACTAA
AGGAAGCTGCACCTATGATTGACCAAATATTGAATGAATGTCAGTTCAAA
ACTCTAGTTCATGGTGATGCAAAAGTagctaatttttgtttttcaacaaG
TGACACAGCTGTAGCTGCAGTTGATTTTCAATATGTAGGTGGTGGCTGTG
GTATGAAGGATGTTGTTTATTTTATTGGAAGTATTCTAGATGAAAAAGAG
TGTGAGTCCAGGGAAAGTGAACTCCTCCATGTTTACTTTGCAGTTCTAAA
ATCAGCAACTCTGAAGCATCATCCTAATTTAAATGTTGAAAACCTAGAAA
ATGAATGGAGGAAACTTTTTCCAATAGCATGGACAGATTTTCATCGGTTT
CTTTTAGGATGGAGCCCTGGGCATTGGAAAATTAATACTTATAGTGAAAA
ATTAGCAAGGAAGGTCATTACCAAGCTAGGGATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057876-exon-scaffold_30-1491911889:16244..17575 | TCONS_00057876-exon-scaffold_30-1491911889:16244..17575 | Clytia hemisphaerica | exon |
| TCONS_00057876-exon-scaffold_30-1510915933:16244..17575 | TCONS_00057876-exon-scaffold_30-1510915933:16244..17575 | Clytia hemisphaerica | exon |
| TCONS_00057876-exon-scaffold_30-1575043694:16244..17575 | TCONS_00057876-exon-scaffold_30-1575043694:16244..17575 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_30 | supercontig | scaffold_30:16244..17575 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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