TCONS_00057893 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057893
Unique NameTCONS_00057893
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2427

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057893 ID=TCONS_00057893|Name=TCONS_00057893|organism=Clytia hemisphaerica|type=transcript|length=2427bp
AAACTGGACATTCTACTGTATTTGCAGGATTGAGTTCCTTTATATGCATG
AAAAACTCTTCTTTAAAAGACTGATGCACTCTCTATTATTAATAATGAAC
GATATGctcattttattttcagaaaaaatgaatattACAATTAAGTACTC
AAAAAATCTGGAACCTTTGACAATTTCAAATGATGATGTGAAATCATTGG
ATGAATTGAAGCTTAGAATTGAAGAAACAATTCAGCTGCCAGGACATCTC
CAACACTTTGCTTTAGAAGAGACATCTATATTTGTGACATCCAACAATTT
TCAtgaacttttcttcaaaaaagagaagattgttttgaaattattttgtg
cTGGCACAGAAGactcaaaaatcatcaaaatatgtCAAGATCTTGAGATG
AATGATGAAATTATTGAGATGTGGATGGTCTTAGGTTCTTTTCACTTCAA
TTTTCCCATCAAACTGGATTCTAAAATAACAGATGCAAGAAGGAGCTTAG
ATGAAAATGGTTTCTCAAGTAAAGCAAGTTTGTTTTATCCGTCTAATTAT
CTTGATCTTGCGCTGCCCATACTTCCTCTTTCAGATGATCAATTCCTAGT
GGATTTGTTCTTTCAAAGAGATGAATTCCAAAGTGATTATTATTTGATTC
AATTGGAAAAATTTATGGGAGGCAATTGCATGGGAGAAATACGAAATATT
GTTATACGCTCATACATTAATGAGGATAGAGTCTTTGAGTTGCACCTAAA
TGAAAAGGTTATCATTGATACTGTTGCTGTCAAGGAACGTATCATGGAAG
AGATTGGTATACCAGTGCACCTACAAGCCTATTGTTTTGAAGCAGATAGC
AACTTTTTGAAAGATATTTGCTTGGTCAGTGAATTTTATATTCATCGTGA
ATGGGAAGGTTATGATCCTGCAAATATAGATCTTCGTTTGTTTGTGCTAC
CCACAAAGGATGAAAAGATAATCCAAATTTGCGAAGATCATAACATTTTC
ATGTTCCATCCAGTTGCTTTGTTtaataacaaaaataagatTGTAGAGTA
CAATTTTGACAAACATTCTATTACCTTTGCAGATGCTTTGAGTATCATGA
TCAAAGAGGCTGAGTTGCCTGAGTCTGCTGATTTCAGATGTTACGTTAGA
GGTAAGGAGGTTAAATGTAATTCGTTTATACTAGATCATTACATTTATTG
GGTTGGTAGGGATGATTATGAAGAATATGGGGAGATGATTGTTGAAAAGC
AACTTCAAGTACTTGTCAGTGTTGCAGAGTCACCAAATGAAGAAAACAAC
AAAGTATGTACAGAGAAAGGATTTGGTGTAATGAAGACTGTCACAGTTTT
GCTTCATGATCATTCCACTGTTGTTCAAAAGTATTCTCTTAATGATGTGC
CTACCTTAGACGAATTATCGGAGAGGCTTCACGAAATTTTTCCTGGATTT
TCCTTTGAATTGTTTCATGACAACAAACTCTTACGATGCCAGGAACTGTT
TCATTGGTTGTATAAGCTTTCTGATTTATTCTTTGACAAAGAAGCAAACT
CTACAATTGAGAATGTTAACATTATCTTGACATTCAAAACCAATTGTatt
tttttggatgaaaaagatCTCAAAGTTATAGATGAATACTGTAAATCACA
ACAAGTTGCTCGCtgcaaaaagatcaaaatcaatttccaaAATGGAAGAA
GTAAATTCATTTGTGATGATGATAAATATAATAGCATGGATTTGTTCAGA
GATGTGTATCCTAGAGCATGCTTGTCTTGGGAGACTGACAAGTTACTATT
TAATGGAAGAGAAGTTCCCCCAGATAAATTTCTTTTAGAACTCTTTGTAG
AACAAGCAGACCCAACTACTGATTTTATTACCTTCACTCACGAGAAGATT
AACCCAAAGCCCGAAAGTCAACAAATTCAAGATGAATCCCTGGATAGCCC
GTGTCTGCTGTTATAATAATATATTTATTGGTGCATCCGAGATACCGCCC
TTGCCAGGATTTTTGAGCAAATCCTATGTTTGATTTATtctatattattt
tatttatcattCCATATATGATCATACACTacccaatatttttttcaata
agtttgaattaagattgtgagaaaactaaaaatattatgTATCCTTAAAC
TTTTCATCGTCAGAAAGAAGAAAGGTTAACTttaattttgagctattata
aaaattctcttttgaaaaagagtgattttcgagaaaaaacaGGGGATCAA
ATTCAAGCATACAAAACACTGATAAAAGCTTTTTTAGATAGTATTTTTAA
CACCTAAAGATTCGAGGgcctttcaaatgttttgattatctaaggcgaga
ccaattttgATTAATTGTTTTATGGGctcgaccgaccctgaaattccaaa
aatcgaaataaaaataaaattgatctt
Run BLAST on NCBI

protein sequence of TCONS_00057893-protein

>TCONS_00057893-protein ID=TCONS_00057893-protein|Name=TCONS_00057893-protein|organism=Clytia hemisphaerica|type=polypeptide|length=654bp
NWTFYCICRIEFLYMHEKLFFKRLMHSLLLIMNDMLILFSEKMNITIKYS
KNLEPLTISNDDVKSLDELKLRIEETIQLPGHLQHFALEETSIFVTSNNF
HELFFKKEKIVLKLFCAGTEDSKIIKICQDLEMNDEIIEMWMVLGSFHFN
FPIKLDSKITDARRSLDENGFSSKASLFYPSNYLDLALPILPLSDDQFLV
DLFFQRDEFQSDYYLIQLEKFMGGNCMGEIRNIVIRSYINEDRVFELHLN
EKVIIDTVAVKERIMEEIGIPVHLQAYCFEADSNFLKDICLVSEFYIHRE
WEGYDPANIDLRLFVLPTKDEKIIQICEDHNIFMFHPVALFNNKNKIVEY
NFDKHSITFADALSIMIKEAELPESADFRCYVRGKEVKCNSFILDHYIYW
VGRDDYEEYGEMIVEKQLQVLVSVAESPNEENNKVCTEKGFGVMKTVTVL
LHDHSTVVQKYSLNDVPTLDELSERLHEIFPGFSFELFHDNKLLRCQELF
HWLYKLSDLFFDKEANSTIENVNIILTFKTNCIFLDEKDLKVIDEYCKSQ
QVARCKKIKINFQNGRSKFICDDDKYNSMDLFRDVYPRACLSWETDKLLF
NGREVPPDKFLLELFVEQADPTTDFITFTHEKINPKPESQQIQDESLDSP
CLLL
Run BLAST on NCBI

transcript from alignment at scaffold_301:14287..28040+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057893 ID=TCONS_00057893|Name=TCONS_00057893|organism=Clytia hemisphaerica|type=transcript|length=13754bp|location=Sequence derived from alignment at scaffold_301:14287..28040+ (Clytia hemisphaerica)
AAACTGGACATTCTACTGTATTTGCAGGATTGAGTTCCTTTATATGCATG
AAAAACTCTTCTTTAAAAGACTGATGCACTCTCTATTATTAATAATGAAC
GATATGctcattttattttcagaaaaaatgaatattACAATTAAGTACTC
AAAAAATCTGGAACCTTTGACAATTTCAAATGATGATGTGAAATCATTGG
ATGAATTGAAGCTTAGAATTGAAGAAACAATTCAGCTGCCAGGACATCTC
CAACACTTTGCTTTAGAAGAGACATCTATATTTGTGACATCCAACAATTT
TCAtgaacttttcttcaaaaaagagaagattgttttgaaattattttgtg
cTGGCACAGAAGactcaaaaatcatcaaaatatgtCAAGATCTTGAGATG
AATGATGAAATTATTGAGATGTGGATGGTCTTAGGTTCTTTTCACTTCAA
TTTTCCCATCAAACTGGATTCTAAAATAACAGATGCAAGAAGGAGCTTAG
ATGAAAATGGTTTCTCAAGTAAAGCAAGTTTGTTTTATCCGTCTAATTAT
CTTGATCTTGCGCTGCCCATACTTCCTCTTTCAGATGATCAATTCCTAGT
GGATTTGTTCTTTCAAAGAGATGAATTCCAAAGTGATTATTATTTGATTC
AATTGGAAAAATTTATGGGAGGCAATTGCATGGGAGAAATACGAAATATT
GTTATACGCTCATACATTAATGAGGATAGAGTCTTTGAGTTGCACCTAAA
TGAAAAGGTTATCATTGATACTGTTGCTGTCAAGGAACGTATCATGGAAG
AGATTGGTATACCAGTGCACCTACAAGCCTATTGTTTTGAAGCAGATAGC
AACTTTTTGAAAGATATTTGCTTGGTCAGTGAATTTTATATTCATCGTGA
ATGGGAAGGTTATGATCCTGCAAATATAGATCTTCGTTTGTTTGTGCTAC
CCACAAAGGATGAAAAGATAATCCAAATTTGCGAAGATCATAACATTTTC
ATGTTCCATCCAGTTGCTTTGTTtaataacaaaaataagatTGTAGAGTA
CAATTTTGACAAACATTCTATTACCTTTGCAGATGCTTTGAGTATCATGA
TCAAAGAGGCTGAGTTGCCTGAGTCTGCTGATTTCAGATGTTACGTTAGA
GGTAAGGAGGTTAAATGTAATTCGTTTATACTAGATCATTACATATATTG
GATTGATAGGGGTGATTATGAAGATGGGGAGATGATTGTTGAAAAACAAC
TTCAAGTACTTGTCAGTGTTGCAGAGTCACCAAATGAAGAATACAACAAA
GTATGCATAGGGAAAGGATTCGGTGTAATGAAGACTGTCACAGTTTTGCT
TCATGATCATTCCACTGTTGTTCAAAAGTATTCTCTTAATGATGTGCCTA
GCTTAGGCAAATTATCTGAGAGGCTTCACGAAATTTTTCCTGGATTTTCC
TTTGAATTGTTTCATGACAACAAAGTCTTACGATGCCAGAAACTGTTTTA
TTGGTTGTATAAGCTTCCTGATTTATTCTTTGACAAAGAAGCAAACTCTA
CAATTGAGAATGTTAACATTATCTTGACATTCAAAACCAATTGTattttt
ttggatgaaaaagatCTCAAAGTTATAGATGAATACTGTAAATCACACCA
AGTTGCTTGCtgcaaaaagatcaaaatcaatttccaaAATGGAAGAAGTA
AAGTCATTTGTGATGATGATAAATATAATAGCATGAATTTGTTCAGAGAT
GTGTATCCTAGAGCACGCTTGTCTTGGGAGACTGACAAGTTACTATTTAA
TGGAAGAGAAGTTCCCCCAGATAAATTTCTTTTAGAACTCTTTGTAGAAC
AAGCAGACCCAACTACTGATTTTATTACCTTCACTCATGAGAAGATTAAT
CCAAGGCCCGAAAGTCAACAAATTCAAGAAGGATCCCTGGATAGCCTGTG
TCTGCTATTATAATTATTCATCGGTGCATCCGAGATACCACCCTTGCCAG
GATTTTTGAGCAAATCCTATGTTTGATTTATTCtatataattttatttat
tattccATTTATGATTATACACTATCCaatattaaaaattaaattaaact
tTAGATTCATTAtaatatgttttattttttttatataacttTTACTTTCT
TTTGTGTGTTTGAAAGTGAATGAGTTTAAATCAAGATTGTGAGAAAACTA
GAAATATTATAAATCCAAACTTTTCACCGTAAGAAAAAAGAAAGGTTCAC
Tttaattttgagctattatattctcttttgaaaaagcttgattttcgaga
aaaaacaGGGGATCAAATTCAAGCATACAAAACACTGATAAAAGCTTTAT
TAGATACTATTTTTAACACCTAAAGATTCCGAGggcctttcgaatgtttt
gattatctaaatataaaataaaaaagaattgttaaactcaaaaaatcttt
attaaatCAATTGAAACTTTAAACTGACTGTGTCTCATCACAAGAAAACA
CACTCTTTTCTTgtacaaaaagagaaaaaaaatgatccacaactttttcc
caaaaatgatgctttttcaaaagagaattttttcgaatttttattacttt
tgaaCACGTGAAGCAAATTTACAGTATGATAGCCCAAAATATAAGTTAGT
CTTTCCTCCTTTGAATGGCAAAAAGTTTGGATTTATGATATctttagttt
tcttttttagacttttttctgAAACACTTGCAGTGAGAGCTATTACTTTC
atgattttaaaaagttttctgattttcttaaaataagtATTTGCTGACTT
GCAAACTGGATTGAAAAATTGCTCTTGTGTATTGACTTGCTTTGTTGACG
TTAGTTTTTAAAGCCTTAAGATGTTGGTAGACCTTCTTCAATTGttaaaa
aactacaaaaaagtAATTCAAAATGGAGATTGATATAACACTTTGTAAAT
TGTAATTGTTTTGTAAACTCTTTCATCaaacatgaaaaacaaattGTAAT
ATTTTCATATACGGTCATCttaaaacaaaacattatttttctatttaaac
tgtagtattttttataaaaagattgtAGAAATTTAGACAGGAAGGAACTC
ATAATGAATAGGCCCATTCCCCAATTTTAAAgtggaacttattttggtga
ttTGATAAAAGAATTTTGTGACATACTGTgagatttaaaaacttttttat
agcAGTACAGTGGaagaaaatttaacaaacttaTTAGAAATTACCACTTC
AACAAAGTCACTTTTCCTttcaatttgacaaaaataattccgataaaaat
tatttaattgtCCTACAacttgaaattattttatttatttatgcaCAACA
TGACGTTATATTCAAGTTCTATATTTTTGGTATTTGTAAATCTGAAATTT
GTAATACTGTAATTACTTTATGATTAAAAATGGAACTTACACAAACTTTT
TGTACTTTCGATTTTAAGAAATCTAGTTTGAAGACGGACATTCGCACAGA
TTCGCAATGTAGTGTTGTTAGAGCTAGTATTATTCTCCTTAATTTTCATA
GGCTGTTTTAGACCATCATGTCAAACTTAgggagcggtcattaagtatag
CACATACCTGGGTGGAAGATATCTTTTTAGGGGGACTTTCAATTATATAC
CCTGACAAAAATTCGCACAAAATTTTCTTACCCTGGCCTAAAGAGAGGTA
AAACTTTTATATCCTACCAACGAGGTTTATGAGTACATGAAATACCGACG
CAAAAGTGGTGTCCAAAAGAACAAAATTGTTGTATCCAAAAAATTCCACA
TCATCTGTCTCGTTCCATGAAAAGTGGgttgatattttcaaatttccttt
tatTAAAAATTAGTGCAATTCCATGAAAGAGTATAAATATATTCTATGGG
AAATGTAAAACAAGAACAACAAGGTTTTTTAAACGATCTGAAAACGATCT
GAAAAACGTCTTTCCAACTCGTcgtaccttattggtatatattttcgcgt
gttacaaattttcgcgggtacttattttcgcgagttttttggtcaatttt
tgcgaaatttaatactgtttaaatttttcaaaattacaaaatcgcgaaat
taaatacacacgaaaaaaattttcttagtatttttttagtatttttacat
caaaaacgttgtgtttcaagcaaaatcagtctttttcttgctttatattc
ccactttctgaaaatacctagtttagtgaatcgcgaaatttaatacacgc
gaagattttccagaagtcggcaatcgcaaaatttgatacacacgaaacac
gttttttcgaaaaaatataccaataaggtactcttaggttccaaataaac
gggggggttggaataaacgggggggttggaaaattttctagattttaata
aacggggggcctaattgccgggggggctggaaattgtacttctgaaaccc
aaaaataaggtaaaaataggctaaaatcagacTATTTAGAGCAAAGTAAG
GGGCTTTCTCTTTGACAGctcaaaatattcttagagattaataaacgggg
gggtcctaataaggtccgggggggttggaaaattttcaaaaaattaacaa
gcagggggcccgtttatttggaacctaagagtatttcGACGAGATATTGG
TTGTCAAAAGATTTCATACCCTACCCAAACTTACAATCTTTTTTCCATAA
CCTACCAAAATAAAGAGTAAAATTTTCATACCCTACCCAAATATCTTCCA
CCCTACCAAGTTCCATACTTATGACCACTCCCTTATCAAaagaagagatt
tgtaattgtaattttactgtcttttaacgagcgttgcactccttcgcatg
ttacCGACTTAGTTGCTCTATTGTCCTAAATTCACAAGTGATTTTAATAG
CCAAAAGGCAAGGCTACTGTTTATCCTCTGTCAAGTCTGCAAAACTTGAC
ATTTGACCTTATTTTGCATTTTATTCATCTTCTTATCTTTGTAAGtattt
aaattaaaaaacagGTGCAGGTGCagtgaaataaaattttaagagaCTTT
GTTAGAAATTACCGCTTCACCAAAATGCATTTTTCCTTTCAATCtgacaa
caaaatttcaaaaataattaattaattaagttgaaattattttatttatt
tatatgcacaacataaaatttatatttaagtcatatatttttggtatttt
gtaaatcaaaaatttgtaaaatttaataATACTTTACTTAATTAATTGTA
GTTAAAGATTAAACGTTAACATAAACTTTCTGTACTTTTGATTTTGCAGA
AATCATTTGTTGAGAGAATTTTGTCCTAGTCGTCATAGAATATTGTCCCT
CAACCACATTTAGAAAACACTGTATAGAActattctgtttttttcttAAG
TCATGgcaattgaagcaaaataatctgCCATATTTGCCAAAGTAGAGAAC
AGTAATAGACAAcacatggtttcagcccccccttaaaataaggggtgatt
taaaatttagagaaaaacacaagggacaaaaatgttaaaaactgaGAAAT
AAGGGGGGACTTGGTCTCAAGGGTCAAATGGAAGCCCTTGCTACTTGAGG
GGGGAGTAATCTTGTTCctttcttgcaatttttttccctCGCTTCGCTCC
AAATACAGTtcattggtaacttctttgcaatctagctaatttacaagttt
tttgtgtacaatatagcattattaaatgaaaatctaactgcacCCCAAGA
CCaatgctgacaacaatattgaaatcataaaacatcaattttttcgcacA
CTTTGTTCGCATTAcactttctttctttaaagtttcttttcactctagaa
AGTCAATTTGTCTATTtgtatttagtgatttagggtagcttggcagtcga
ttttaaaaaaattttctagtcaGCCCCAACCATGATGGGGCCTGTTGTcc
ccttttccattcatcaaagataaatctactcttctccactaaatatttcc
ttcctcattatgcctaggcaaatgaattagtaaaagtttagaaaatggtg
ggtggggacaccactttggaaaattgactttggctcTTGCAAAGCATCTA
AGGCTCCAAGCACATTCCAGCTATGGAATTTTCGAATGTtgcattctaaa
atatttttgtttccttggtgTGCCATCATCCTACACTACATCTAAGGCTC
CAATCACATTTCAGTAATGAAATGGCCCGTGATtcgaatatttacatttt
ttaaagacattCAATTTGGAATATTTTGCTGTTCTGCTTCTATATGGAAT
AGTTTCGTTCAAATGCTATCAGTTTGAGGAGAAAACGATTCTAGAAAAGT
GTATTGTAGGGATTTTTATACCAGGTATATTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNAGCTTAAGGACTAATTTCTCGCTTGTC
TCTACACCCCAAAAATTAAGGGCATGTATACATAAGAGTCTTGCAAATTT
AAGGGGGGAGTAAGACTTAAGAGGCACCTCAAAACCATCTTTAAGCTTTA
AGGGGGATAAATTGATAAGGGGTGATTTGTGTTTTAAGGTGGGACTCAAA
ATCATGGATGAAACCATGCAACAGTAGTTCTGTACTAGAAATTTGTTCAA
TTAGAACAGACAATTGTCATGGTATAAAGCAATGAGAAGCTAAGAGAATG
GTCATGATAAGTCAAATTGCTGACACCGAACTGTGGTCTACCTATCAATT
ATAATAACACTGATATAATAATAAGAAAGTCAGTAGAAGAAATTCAACAG
TCGATTTAGCCTGGATATACAGACcataaactatttcaccgtctagtttt
tttcaatattttgtctctggtttacggtctggtccaattATGAAATGTTT
TTACACATCTGATGATTGCGATAAGCATATTAAACTTAAAGTAATGTTTT
TTTCAACCTTGTGAATTTTCGAAAGATATAATTTATGATTCGCTCTACGA
AGTATTGAGCACTATTTTATtaagataactttttttcttcaccagGCAAA
TTGTGTCATAGTGTTCTTCAGGGTCTGTTCTCCCCATACCTTAATTGAAG
ACTTTCTATCTCCTTCAGGGTCTGTTCTCCCCATACCTAAATTGAAAACT
GTCTATCCCCTCTTCAGTTTTTCTCACACTGACAAAATTTCCGATCAACT
TTCGATCAAATATTTTAGTGCCAAAATATGCCTATAAAGAATAGCAATGG
GCTCAAAATGCCTTCAATTTCGGCTTTTTACTTATAAATTGCTCgttttg
atactttttattaCTAATCTTCATATCTGAAAGCAAGAAAAAGGGTTTTT
ACCCAGAAAAAGTTGTCCCCCTCAATCCAGGGGGAGGACACTAGTTTCTG
AGATTACAAAAGCAGGAAACTGGACATTCTACTGTATTTGCAGGATTGAG
TTCCTTTATATGCCTGAAAAATCCTAAAATATATTGACTGCTTAAGAAAT
TACTCTTAATAACTTTAAAAGACTGATATGCACTCTCTATTATTAATAAT
GAACGATATGctcattttattttcagaaaaaatgaatattACAATTAAGT
ACTCAAAAAATCTGGAACCTTTGACAATTTCAAATGATGATGTGAAATCA
TTGGATGAATTGAAGCTTAGAATTGAAGAAACAATTCAGCTGCCAGGACA
TCTCCAACACTTTGCTTTAGAAGAGACATCTATATTTGTGACATCCAACA
ATTTTCAtgaacttttcttcaaaaaagagaagattgttttgaaattattt
tgtgcTGGCACAGAAGactcaaaaatcatcaaaatatgtCAAGATCTTGA
GATGAATGATGAAATTATTGAGATGTGGATGGTCTTAGGTTCTTTTCACT
TCAATTTTCCCATCAAACTGGATTCTAAAATAACAGATGCAAGAAGGAGC
TTAGATGAAAATGGTTTCTCAAGTAAAGCAAGTTTGTTTTATCCGTCTAA
TTATCTTGATCTTGCGCTGCCCATACTTCCTCTTTCAGATGATCAATTCC
TAGTGGATTTGTTCTTTCAAAGAGATGAATTCCAAACTGATTATCATTTG
ATTAAATTGGAAAAATTTATGGGAGGCAATTGCATGGGAGATTGTATACG
AAATATTGTTATACGCTCATACATTAATGAGGATAGAGTCTTTGAGTTGC
ACCTAAATGAAAAGGTTATCATTGATACTGTTGCTGTCAAGGAACGTATC
ATGGAAGAGATTGGTATACCAGTGCACCTACAAGCCTATTGTTTTGAAGC
AGATAGCAACTTTCTGAAAGATACTTGCTTGGTCAGTGAATTTAATACTC
AGTGCGAATGGGAAGGTTATGATCCTGCAAATATAGATCTTCGTTTGTTT
GTGCTACCCACAAAGGATGAAAAGATCATCCAAATTTGCGAAGATTATAA
CATTTTCATGTTCCAACCAGTTGCTTTatttaataacaaaaataagatTG
TAGAGTACAATTTTGACAAACATTCTAGTACCTTTGCAGATGCTTTAAGT
ATCATGATCAAAGAGGCTAAGTTACCTGAGTCTGCTGATTTCAGATGTTA
CATTAGAGGTAACGAGGTTGAATGTAATTCGTTTATACTATTTCGCGATT
CGCGTTTTGACTTCGTACGAAGTGGGCGTAAGAAATTGAACTTTTACAAA
CTTGAATTTGAACTTTTACAAAATGGAGAATCATGACAACTCACTGAGGG
ATGCTGAAGCATATATTGATGATATGGCTGAGTATATCAAATCTAAAGAA
GCCAAGGAGAACTTTAAAGAAAGCATCGTTGACGAAATTGCATCAACTAT
CAAAAAGGACATTCATGAATTTGTTATGGAAAGTATTGCACCACTTAAAA
AATCATCTTTTGGAAGGGAGTCCTTTTCTTTAGAAAGTTATGATCACAAA
GACCTGATCCATCACATGGCAAAAGAAATAGATTTTCTTAGAGAAGAGTT
GATCTCAAAAAATAAACTAATCGAAATGCTGTTATCTCGTAATGAGGGAA
ACACTAATGGtaataaaaaatcagaaagtcagAACACTGTTACAGAGGAA
AGTaataaaaaagacaatacaaatgacagaaaagataaaaaagagaaagc
CCTTTctaaaaaacgcaaaaacgaGAAACCAGATGAAAGAAGAGTGAATA
CAGAAGAGAACACAGAAGAGAATTTGAGAGAAAGGAAAAAGGTGTATATC
ATTGGAGACTCTATGCTGAACGGCCAGAAAGAAGTTGGATTTAGAAAACT
TCAACATGATGTAAAGATCAGACCACACCCCGGTGCTAACACGGAGGATT
TGATCGATCACATAAAGCCTATTTTGAGAAGGAAAATGGCTGATGTCATG
ATCATCCATGGTGGAACAAATGACCTTACGAGTGATGGTGAAACAACGAA
AAACTTGGAAGCTATAAATCGCATTGCGAAGAAGATCTCACCAAGAACGA
AATTGGTAATTTCAAACTGTGTTGTTCGTACTGATACTCCAGATGGTCCT
GATAAAGTTACAAATTTGAATACAGGTTTGAAGAAAATGTGTGAAAATNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTTacttattattttgatattgttgGATTTTATTAGTTATAAATTTACTT
GATTTGTAATTACGGTACCCCAACATTaaagaaagatattattattatta
ttatatactAGATCATTACATTTATTGGGTTGGTAGGGATGATTATGAAG
AATATGGGGAGATGATTGTTGAAAAGCAACTTCAAGTACTTGTCAGTGTT
GCAGAGTCACCAAATGAAGAAAACAACAAAGTATGTACAGAGAAAGGATT
TGGTGTAATGAAGACTGTCACAGTTTTGCTTCATGATCATTCCACTGTTG
TTCAAAAGTATTCTCTTAATGATGTGCCTACCTTAGACGAATTATCGGAG
AGGCTTCACGAAATTTTTCCTGGATTTTCCTTTGAATTGTTTCATGACAA
CAAACTCTTACGATGCCAGGAACTGTTTCATTGGTTGTATAAGCTTTCTG
ATTTATTCTTTGACAAAGAAGCAAACTCTACAATTGAGAATGTTAACATT
ATCTTGACATTCAAAACCAATTGTatttttttggatgaaaaagatCTCAA
AGTTATAGATGAATACTGTAAATCACAACAAGTTGCTCGCtgcaaaaaga
tcaaaatcaatttccaaAATGGAAGAAGTAAATTCATTTGTGATGATGAT
AAATATAATAGCATGGATTTGTTCAGAGATGTGTATCCTAGAGCATGCTT
GTCTTGGGAGACTGACAAGTTACTATTTAATGGAAGAGAAGTTCCCCCAG
ATAAATTTCTTTTAGAACTCTTTGTAGAACAAGCAGACCCAACTACTGAT
TTTATTACCTTCACTCACGAGAAGATTAACCCAAAGCCCGAAAGTCAACA
AATTCAAGATGAATCCCTGGATAGCCCGTGTCTGCTGTTATAATAATATA
TTTATTGGTGCATCCGAGATACCGCCCTTGCCAGGATTTTTGAGCAAATC
CTATGTTTGATTTATtctatattattttatttatcattCCATATATGATC
ATACACTacccaatatttttttcaataagtttgaattaagattgtgagaa
aactaaaaatattatgTATCCTTAAACTTTTCATCGTCAGAAAGAAGAAA
GGTTAACTttaattttgagctattataaaaattctcttttgaaaaagagt
gattttcgagaaaaaacaGGGGATCAAATTCAAGCATACAAAACACTGAT
AAAAGCTTTTTTAGATAGTATTTTTAACACCTAAAGATTCGAGGgccttt
caaatgttttgattatctaaggcgagaccaattttgATTAATTGTTTTAT
GGGctcgaccgaccctgaaattccaaaaatcgaaataaaaataaaattga
tctt

Coding sequence (CDS) from alignment at scaffold_301:14287..28040+

>TCONS_00057893 ID=TCONS_00057893|Name=TCONS_00057893|organism=Clytia hemisphaerica|type=CDS|length=3930bp|location=Sequence derived from alignment at scaffold_301:14287..28040+ (Clytia hemisphaerica)
AACTGGACATTCTACTGTATTTGCAGGATTGAGTTCCTTTATATGCATGA
AAAACTCTTCTTTAAAAGACTGATGCACTCTCTATTATTAATAATGAACG
ATATGctcattttattttcagaaaaaatgaatattACAATTAAGTACTCA
AAAAATCTGGAACCTTTGACAATTTCAAATGATGATGTGAAATCATTGGA
TGAATTGAAGCTTAGAATTGAAGAAACAATTCAGCTGCCAGGACATCTCC
AACACTTTGCTTTAGAAGAGACATCTATATTTGTGACATCCAACAATTTT
CAtgaacttttcttcaaaaaagagaagattgttttgaaattattttgtgc
TGGCACAGAAGactcaaaaatcatcaaaatatgtCAAGATCTTGAGATGA
ATGATGAAATTATTGAGATGTGGATGGTCTTAGGTTCTTTTCACTTCAAT
TTTCCCATCAAACTGGATTCTAAAATAACAGATGCAAGAAGGAGCTTAGA
TGAAAATGGTTTCTCAAGTAAAGCAAGTTTGTTTTATCCGTCTAATTATC
TTGATCTTGCGCTGCCCATACTTCCTCTTTCAGATGATCAATTCCTAGTG
GATTTGTTCTTTCAAAGAGATGAATTCCAAAGTGATTATTATTTGATTCA
ATTGGAAAAATTTATGGGAGGCAATTGCATGGGAGAAATACGAAATATTG
TTATACGCTCATACATTAATGAGGATAGAGTCTTTGAGTTGCACCTAAAT
GAAAAGGTTATCATTGATACTGTTGCTGTCAAGGAACGTATCATGGAAGA
GATTGGTATACCAGTGCACCTACAAGCCTATTGTTTTGAAGCAGATAGCA
ACTTTTTGAAAGATATTTGCTTGGTCAGTGAATTTTATATTCATCGTGAA
TGGGAAGGTTATGATCCTGCAAATATAGATCTTCGTTTGTTTGTGCTACC
CACAAAGGATGAAAAGATAATCCAAATTTGCGAAGATCATAACATTTTCA
TGTTCCATCCAGTTGCTTTGTTtaataacaaaaataagatTGTAGAGTAC
AATTTTGACAAACATTCTATTACCTTTGCAGATGCTTTGAGTATCATGAT
CAAAGAGGCTGAGTTGCCTGAGTCTGCTGATTTCAGATGTTACGTTAGAG
GTAAGGAGGTTAAATGTAATTCGTTTATACTAGATCATTACATTTATTGG
GTTGGTAGGGATGATTATGAAGAATATGGGGAGATGATTGTTGAAAAGCA
ACTTCAAGTACTTGTCAGTGTTGCAGAGTCACCAAATGAAGAAAACAACA
AAGTATGTACAGAGAAAGGATTTGGTGTAATGAAGACTGTCACAGTTTTG
CTTCATGATCATTCCACTGTTGTTCAAAAGTATTCTCTTAATGATGTGCC
TACCTTAGACGAATTATCGGAGAGGCTTCACGAAATTTTTCCTGGATTTT
CCTTTGAATTGTTTCATGACAACAAACTCTTACGATGCCAGGAACTGTTT
CATTGGTTGTATAAGCTTTCTGATTTATTCTTTGACAAAGAAGCAAACTC
TACAATTGAGAATGTTAACATTATCTTGACATTCAAAACCAATTGTattt
ttttggatgaaaaagatCTCAAAGTTATAGATGAATACTGTAAATCACAA
CAAGTTGCTCGCtgcaaaaagatcaaaatcaatttccaaAATGGAAGAAG
TAAATTCATTTGTGATGATGATAAATATAATAGCATGGATTTGTTCAGAG
ATGTGTATCCTAGAGCATGCTTGTCTTGGGAGACTGACAAGTTACTATTT
AATGGAAGAGAAGTTCCCCCAGATAAATTTCTTTTAGAACTCTTTGTAGA
ACAAGCAGACCCAACTACTGATTTTATTACCTTCACTCACGAGAAGATTA
ACCCAAAGCCCGAAAGTCAACAAATTCAAGATGAATCCCTGGATAGCCCG
TGTCTGCTGTTATAAAACTGGACATTCTACTGTATTTGCAGGATTGAGTT
CCTTTATATGCATGAAAAACTCTTCTTTAAAAGACTGATGCACTCTCTAT
TATTAATAATGAACGATATGctcattttattttcagaaaaaatgaatatt
ACAATTAAGTACTCAAAAAATCTGGAACCTTTGACAATTTCAAATGATGA
TGTGAAATCATTGGATGAATTGAAGCTTAGAATTGAAGAAACAATTCAGC
TGCCAGGACATCTCCAACACTTTGCTTTAGAAGAGACATCTATATTTGTG
ACATCCAACAATTTTCAtgaacttttcttcaaaaaagagaagattgtttt
gaaattattttgtgcTGGCACAGAAGactcaaaaatcatcaaaatatgtC
AAGATCTTGAGATGAATGATGAAATTATTGAGATGTGGATGGTCTTAGGT
TCTTTTCACTTCAATTTTCCCATCAAACTGGATTCTAAAATAACAGATGC
AAGAAGGAGCTTAGATGAAAATGGTTTCTCAAGTAAAGCAAGTTTGTTTT
ATCCGTCTAATTATCTTGATCTTGCGCTGCCCATACTTCCTCTTTCAGAT
GATCAATTCCTAGTGGATTTGTTCTTTCAAAGAGATGAATTCCAAAGTGA
TTATTATTTGATTCAATTGGAAAAATTTATGGGAGGCAATTGCATGGGAG
AAATACGAAATATTGTTATACGCTCATACATTAATGAGGATAGAGTCTTT
GAGTTGCACCTAAATGAAAAGGTTATCATTGATACTGTTGCTGTCAAGGA
ACGTATCATGGAAGAGATTGGTATACCAGTGCACCTACAAGCCTATTGTT
TTGAAGCAGATAGCAACTTTTTGAAAGATATTTGCTTGGTCAGTGAATTT
TATATTCATCGTGAATGGGAAGGTTATGATCCTGCAAATATAGATCTTCG
TTTGTTTGTGCTACCCACAAAGGATGAAAAGATAATCCAAATTTGCGAAG
ATCATAACATTTTCATGTTCCATCCAGTTGCTTTGTTtaataacaaaaat
aagatTGTAGAGTACAATTTTGACAAACATTCTATTACCTTTGCAGATGC
TTTGAGTATCATGATCAAAGAGGCTGAGTTGCCTGAGTCTGCTGATTTCA
GATGTTACGTTAGAGGTAAGGAGGTTAAATGTAATTCGTTTATACTAGAT
CATTACATTTATTGGGTTGGTAGGGATGATTATGAAGAATATGGGGAGAT
GATTGTTGAAAAGCAACTTCAAGTACTTGTCAGTGTTGCAGAGTCACCAA
ATGAAGAAAACAACAAAGTATGTACAGAGAAAGGATTTGGTGTAATGAAG
ACTGTCACAGTTTTGCTTCATGATCATTCCACTGTTGTTCAAAAGTATTC
TCTTAATGATGTGCCTACCTTAGACGAATTATCGGAGAGGCTTCACGAAA
TTTTTCCTGGATTTTCCTTTGAATTGTTTCATGACAACAAACTCTTACGA
TGCCAGGAACTGTTTCATTGGTTGTATAAGCTTTCTGATTTATTCTTTGA
CAAAGAAGCAAACTCTACAATTGAGAATGTTAACATTATCTTGACATTCA
AAACCAATTGTatttttttggatgaaaaagatCTCAAAGTTATAGATGAA
TACTGTAAATCACAACAAGTTGCTCGCtgcaaaaagatcaaaatcaattt
ccaaAATGGAAGAAGTAAATTCATTTGTGATGATGATAAATATAATAGCA
TGGATTTGTTCAGAGATGTGTATCCTAGAGCATGCTTGTCTTGGGAGACT
GACAAGTTACTATTTAATGGAAGAGAAGTTCCCCCAGATAAATTTCTTTT
AGAACTCTTTGTAGAACAAGCAGACCCAACTACTGATTTTATTACCTTCA
CTCACGAGAAGATTAACCCAAAGCCCGAAAGTCAACAAATTCAAGATGAA
TCCCTGGATAGCCCGTGTCTGCTGTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036502XLOC_036502Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057893-proteinTCONS_00057893-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057893-exon-scaffold_301-1491911889:14287..15478TCONS_00057893-exon-scaffold_301-1491911889:14287..15478Clytia hemisphaericaexon
TCONS_00057893-exon-scaffold_301-1510915933:14287..15478TCONS_00057893-exon-scaffold_301-1510915933:14287..15478Clytia hemisphaericaexon
TCONS_00057893-exon-scaffold_301-1575043694:14287..15478TCONS_00057893-exon-scaffold_301-1575043694:14287..15478Clytia hemisphaericaexon
TCONS_00057893-exon-scaffold_301-1491911889:26806..28040TCONS_00057893-exon-scaffold_301-1491911889:26806..28040Clytia hemisphaericaexon
TCONS_00057893-exon-scaffold_301-1510915933:26806..28040TCONS_00057893-exon-scaffold_301-1510915933:26806..28040Clytia hemisphaericaexon
TCONS_00057893-exon-scaffold_301-1575043694:26806..28040TCONS_00057893-exon-scaffold_301-1575043694:26806..28040Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_301supercontigscaffold_301:14287..28040 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.87421	1.96216	0.477611	0.621873	1.31285	0.989073	0.850993	1.25213	1.01684	1.66274	1.20068	0.635844	1.29022	0.880519	1.03776	1.44685	0.845889	1.20517	0.641494	1.30052	1.04699	1.39952	1.34233	2.3079	0.74054	1.6708	0.871441	0.52326	1.13145	1.30971
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057893 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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