Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058022 ID=TCONS_00058022|Name=TCONS_00058022|organism=Clytia hemisphaerica|type=transcript|length=246bp GATGAAATGCGTTTTAAAGCATTCAGCAATTTTCTACAGATTAAAAAGTT GAAGTTATAAACATAACATAGACATTGATTTGTGTTCGAGACGTGTCGAT CAGAGGAATAGCAATGGACATCAAAGCGATTCACATCGTGGTCATCTTTA TAGTGCTTCAAGGTTTCAACACACACAAATGTGATGCTGAAGGTTTTGAA GATTATGAAGACAATGAAGATGAAAGTTTTGTCGATATGAAGAANc Run BLAST on NCBI transcript from alignment at scaffold_304:113655..115874- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058022 ID=TCONS_00058022|Name=TCONS_00058022|organism=Clytia hemisphaerica|type=transcript|length=2220bp|location=Sequence derived from alignment at scaffold_304:113655..115874- (Clytia hemisphaerica) GATGAAATGCGTTTTAAAGCATTCAGCAATTTTCTACAGATTAAAAAGTT
GAAGTTATAAACATAACATAGACATTGATTTGTGTTCGAGACGTGTCGAT
CAGAGGAATAGCAATGGACATCAAAGCGATTCACATCGTGGTCATCTTTA
TAGTGCTTCAAGGTAAAACTCTTTTATTTATGCACCCCTGTCTCACAGCC
CAGGTGGAACTCTCCCCACAGTGGAGTGGGTTGATAATTTTCTATCGAAA
TCCCAATGGGGATTTAAATTCTATGGTTTTCAGCCAGGTCAAAGAATCCA
ACCAGATGGCACACAACGTCAAAACAACGTCCATGTGACGTTGTTTTAAC
GTCCAAATAACGTTATTTGAACGTTAAAACAACGTTGTATGCCAGCTGGG
CACTGCGATGATTTTGAAATGCAGTTTTTTTGTTGAATTTCAAACGGGGA
TGAAAAAAAGTCATTTTACAGGTGGGGATGAAATCCTAATTTTCCCAATG
GAGAGGATTCCCTATTTTCGCTAAATCTTTCAGCGGAGTCTATGAAACAG
GGTGTCCATAAAAAAGCTATGTTGTATTCAAATAATATCCCAGTAAAAGA
TACTTATTTTTCTGGTCCCTTCTTTGTCTAGCCTTGATATCCAAGCCTTA
AAGGGCCATTAAAGTAGTAAAATGTAAACATTACACGAACCACGTGTCAT
TAAAGAGAACAATTAAAATCACGTGTCCAAAACAAACTTGTAAAACAATT
GAACAATCAAAATTAGCCATATTTGGTTTGATCTTTTGACATGTGACATT
TGTTTTGATTTTGTATACACTGCATACAGTTTGTTTACAAATTTCGCAAG
TACTGTAATGTCCCCTTAAGGGCTCTGGTCATAGTGAAAAATCAATTTCA
GAATTTGAAGATAAAACCTTATGTTTTCGCTTCTTTGACATGTTTAAGAA
CAAACTGCTTTTGAAAAAATGAATTTAAGTAATTACATCATGAGTAATTA
AGGAATAAGTGTGACATGGATCTTAATAAAACGTCATAAAGACGCTATTC
ATATACTTTTCACAAAAAAAGCCTAATCTCCTTGGGGAAATCATTTGATT
GTTTCAAACTTTTTTTAAGTTAATGACAAATAATTTCTTTATTCAGATCT
TTTCGGAAAAATTTTTTATTTGGCTACATCCCAAGTTATAGCTGTTTTTG
TATGGAAATTTAGTGGAGAACATTGCCAAAAATGATGTTTTTCGGAGATT
TTAAAGGGAAGATACTTCCACAAAAATTTTCCGAAATTGTATTTTTCGAT
ACTAAATAGATACAACACCTGAACCAAAAAAAACAACAAAATGTTTGATT
TTTACCGAGATTGGGCCTTTGAAAGGTGAAATACTCTTCTTTGAAAAACT
CTTCGTTTTCTTCTTCATTTAATTTTTTCATCTCACTTTTCGATTTTTAA
ATTCTAAAAAGGTAGGTTTAACAGGACATATAAAAAAAGTTATACATTAA
TCTTTTTAAAATGCAGAAATTGCCATTTAAGTTGGTGTAAAATCCAGAGC
CCTTAAATTGTTTTCCAATATACATGTTTCTTCTATTTACAGCCTTGATC
TACCTAAATGCTTGTAAACCCAGCTTTGGAAAATCTTTAGCTTCATTTAT
CTATTTAGGTGTTACTTAGGGTCAGCAAAATTGCAAAAATTTCAACTGTT
ACCCCTCAAAAATCGAAATTTGGTCAAATTAGTACTATTAATGGTTGTAC
AATTTACAAAATCTTCCTATCTTTTCTCCTTGTTAGCCCACGAGGGTCGA
ATATCAGGAGGCACATAAGCATCAGTCCGCAACCTTAGTACTCTCACTTT
TTGACTGTAAAAGTATCTTCACATTCTAAAAGTGTTGCATAGGCTATCAA
CGTAGTAGCGTAGACAAGAGGGGGTGCAAAATTTGTGTAGGAGAACAGAT
TTTCATGACAGTAGTTATATATTGATGATATAAAAAGATGATTACAGTGT
CATAAAAATCTGCTCTCCTGCACAAATTTTGTGCTCCTCTTGTCTACGCT
ACTGCAACGTAAAATATCGATTTTTAACTATATGTAATGATTTGACTCAA
GTTTTCTTTTTTCATTTTTTAATTCTTCTTGAACAGGTTTCAACACACAC
AAATGTGATGCTGAAGGTTTTGAAGATTATGAAGACAATGAAGATGAAAG
TTTTGTCGATATGAAGAANC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00058022-exon-scaffold_304-1575043694:115713..115874 | TCONS_00058022-exon-scaffold_304-1575043694:115713..115874 | Clytia hemisphaerica | exon |
TCONS_00058022-exon-scaffold_304-1575043694:113655..113738 | TCONS_00058022-exon-scaffold_304-1575043694:113655..113738 | Clytia hemisphaerica | exon |
TCONS_00058022-exon-scaffold_304-1510915933:115713..115874 | TCONS_00058022-exon-scaffold_304-1510915933:115713..115874 | Clytia hemisphaerica | exon |
TCONS_00058022-exon-scaffold_304-1510915933:113655..113738 | TCONS_00058022-exon-scaffold_304-1510915933:113655..113738 | Clytia hemisphaerica | exon |
TCONS_00058022-exon-scaffold_304-1491911889:115713..115874 | TCONS_00058022-exon-scaffold_304-1491911889:115713..115874 | Clytia hemisphaerica | exon |
TCONS_00058022-exon-scaffold_304-1491911889:113655..113738 | TCONS_00058022-exon-scaffold_304-1491911889:113655..113738 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_304 | supercontig | scaffold_304:113655..115874 - |
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058022 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 ( blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match Name | E-value | Identity | Description | |
back to top
|