TCONS_00058022 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058022
Unique NameTCONS_00058022
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length246

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058022 ID=TCONS_00058022|Name=TCONS_00058022|organism=Clytia hemisphaerica|type=transcript|length=246bp
GATGAAATGCGTTTTAAAGCATTCAGCAATTTTCTACAGATTAAAAAGTT
GAAGTTATAAACATAACATAGACATTGATTTGTGTTCGAGACGTGTCGAT
CAGAGGAATAGCAATGGACATCAAAGCGATTCACATCGTGGTCATCTTTA
TAGTGCTTCAAGGTTTCAACACACACAAATGTGATGCTGAAGGTTTTGAA
GATTATGAAGACAATGAAGATGAAAGTTTTGTCGATATGAAGAANc
Run BLAST on NCBI

transcript from alignment at scaffold_304:113655..115874-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058022 ID=TCONS_00058022|Name=TCONS_00058022|organism=Clytia hemisphaerica|type=transcript|length=2220bp|location=Sequence derived from alignment at scaffold_304:113655..115874- (Clytia hemisphaerica)
GATGAAATGCGTTTTAAAGCATTCAGCAATTTTCTACAGATTAAAAAGTT GAAGTTATAAACATAACATAGACATTGATTTGTGTTCGAGACGTGTCGAT CAGAGGAATAGCAATGGACATCAAAGCGATTCACATCGTGGTCATCTTTA TAGTGCTTCAAGGTAAAACTCTTTTATTTATGCACCCCTGTCTCACAGCC CAGGTGGAACTCTCCCCACAGTGGAGTGGGTTGATAATTTTCTATCGAAA TCCCAATGGGGATTTAAATTCTATGGTTTTCAGCCAGGTCAAAGAATCCA ACCAGATGGCACACAACGTCAAAACAACGTCCATGTGACGTTGTTTTAAC GTCCAAATAACGTTATTTGAACGTTAAAACAACGTTGTATGCCAGCTGGG CACTGCGATGATTTTGAAATGCAGTTTTTTTGTTGAATTTCAAACGGGGA TGAAAAAAAGTCATTTTACAGGTGGGGATGAAATCCTAATTTTCCCAATG GAGAGGATTCCCTATTTTCGCTAAATCTTTCAGCGGAGTCTATGAAACAG GGTGTCCATAAAAAAGCTATGTTGTATTCAAATAATATCCCAGTAAAAGA TACTTATTTTTCTGGTCCCTTCTTTGTCTAGCCTTGATATCCAAGCCTTA AAGGGCCATTAAAGTAGTAAAATGTAAACATTACACGAACCACGTGTCAT TAAAGAGAACAATTAAAATCACGTGTCCAAAACAAACTTGTAAAACAATT GAACAATCAAAATTAGCCATATTTGGTTTGATCTTTTGACATGTGACATT TGTTTTGATTTTGTATACACTGCATACAGTTTGTTTACAAATTTCGCAAG TACTGTAATGTCCCCTTAAGGGCTCTGGTCATAGTGAAAAATCAATTTCA GAATTTGAAGATAAAACCTTATGTTTTCGCTTCTTTGACATGTTTAAGAA CAAACTGCTTTTGAAAAAATGAATTTAAGTAATTACATCATGAGTAATTA AGGAATAAGTGTGACATGGATCTTAATAAAACGTCATAAAGACGCTATTC ATATACTTTTCACAAAAAAAGCCTAATCTCCTTGGGGAAATCATTTGATT GTTTCAAACTTTTTTTAAGTTAATGACAAATAATTTCTTTATTCAGATCT TTTCGGAAAAATTTTTTATTTGGCTACATCCCAAGTTATAGCTGTTTTTG TATGGAAATTTAGTGGAGAACATTGCCAAAAATGATGTTTTTCGGAGATT TTAAAGGGAAGATACTTCCACAAAAATTTTCCGAAATTGTATTTTTCGAT ACTAAATAGATACAACACCTGAACCAAAAAAAACAACAAAATGTTTGATT TTTACCGAGATTGGGCCTTTGAAAGGTGAAATACTCTTCTTTGAAAAACT CTTCGTTTTCTTCTTCATTTAATTTTTTCATCTCACTTTTCGATTTTTAA ATTCTAAAAAGGTAGGTTTAACAGGACATATAAAAAAAGTTATACATTAA TCTTTTTAAAATGCAGAAATTGCCATTTAAGTTGGTGTAAAATCCAGAGC CCTTAAATTGTTTTCCAATATACATGTTTCTTCTATTTACAGCCTTGATC TACCTAAATGCTTGTAAACCCAGCTTTGGAAAATCTTTAGCTTCATTTAT CTATTTAGGTGTTACTTAGGGTCAGCAAAATTGCAAAAATTTCAACTGTT ACCCCTCAAAAATCGAAATTTGGTCAAATTAGTACTATTAATGGTTGTAC AATTTACAAAATCTTCCTATCTTTTCTCCTTGTTAGCCCACGAGGGTCGA ATATCAGGAGGCACATAAGCATCAGTCCGCAACCTTAGTACTCTCACTTT TTGACTGTAAAAGTATCTTCACATTCTAAAAGTGTTGCATAGGCTATCAA CGTAGTAGCGTAGACAAGAGGGGGTGCAAAATTTGTGTAGGAGAACAGAT TTTCATGACAGTAGTTATATATTGATGATATAAAAAGATGATTACAGTGT CATAAAAATCTGCTCTCCTGCACAAATTTTGTGCTCCTCTTGTCTACGCT ACTGCAACGTAAAATATCGATTTTTAACTATATGTAATGATTTGACTCAA GTTTTCTTTTTTCATTTTTTAATTCTTCTTGAACAGGTTTCAACACACAC AAATGTGATGCTGAAGGTTTTGAAGATTATGAAGACAATGAAGATGAAAG TTTTGTCGATATGAAGAANC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036577XLOC_036577Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058022-exon-scaffold_304-1575043694:115713..115874TCONS_00058022-exon-scaffold_304-1575043694:115713..115874Clytia hemisphaericaexon
TCONS_00058022-exon-scaffold_304-1575043694:113655..113738TCONS_00058022-exon-scaffold_304-1575043694:113655..113738Clytia hemisphaericaexon
TCONS_00058022-exon-scaffold_304-1510915933:115713..115874TCONS_00058022-exon-scaffold_304-1510915933:115713..115874Clytia hemisphaericaexon
TCONS_00058022-exon-scaffold_304-1510915933:113655..113738TCONS_00058022-exon-scaffold_304-1510915933:113655..113738Clytia hemisphaericaexon
TCONS_00058022-exon-scaffold_304-1491911889:115713..115874TCONS_00058022-exon-scaffold_304-1491911889:115713..115874Clytia hemisphaericaexon
TCONS_00058022-exon-scaffold_304-1491911889:113655..113738TCONS_00058022-exon-scaffold_304-1491911889:113655..113738Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_304supercontigscaffold_304:113655..115874 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (64.1108 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.3385 14.3394 12.0245 9.95428 1.10167 0 1.05029 0.983266 6.19567 4.26352 7.4489 3.26441 64.1108 55.8592 2.78327 0.497812 1.22653 1.25715 18.2366 20.9008 6.3188 4.62314 6.5567 0.85157 56.1342 51.664 0 1.19547 0.906724 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058022 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
GATGAAATGCGTTTTAAAGCATTCAGCAATTTTCTACAGATTAAAAAGTTGAAGTTATAAACATAACATAGACATTGATTTGTGTTCGAGACGTGTCGATCAGAGGAATAGCAATGGACATCAAAGCGATTCACATCGTGGTCATCTTTATAGTGCTTCAAGGTTTCAACACACACAAATGTGATGCTGAAGGTTTTGAAGATTATGAAGACAATGAAGATGAAAGTTTTGTCGATATGAAGAANc20406080100120140160180200220240Sequence
Match NameE-valueIdentityDescription
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