TCONS_00005727 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005727
Unique NameTCONS_00005727
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length638

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005727 ID=TCONS_00005727|Name=TCONS_00005727|organism=Clytia hemisphaerica|type=transcript|length=638bp
CGAAATGCCACCGCAACCCATTTTGGACGAGTTGcttcagaaaatcaaaa
caatgaaacGCATTCTACCAATGAAAGTCGTACAAATCACTGACGTTCAG
CCTTTGCTTTCGAGTCACCAATACACAGCTTGTGCTGCCATTTTGAATAT
CGCCAATGTTTTGTTTATGGGTTATTGTCATGGTGTCAAGTCTTTCATGA
AAGAGCTAGTCACTaagATTGTCACCCAAATTTGTAAGGAAGATTTTGAG
AAGTTCTGGTTTCTATTTGCAATGGATTTGTtagcaaaaatcaaaacaac
acacAGCGAACTATCATTGACAGTATGTAAAAACCAGGTTGAcaaatatt
ggaaagatatgTCGAACTTTAAGAGGGTAGAAATGGATTTAACGTAGTGG
AAAACTTGTTTTTgagaagagatttttttaaattttctatgAGCCCAGAT
CCGGGGGTTACTAGGCAGGGTTACTAGCTTAcggggaaggggggggggtg
ccgcccgacttttgaCCCTTGGATCCcgcttaccgggactaaaaatgaga
aaacaaaggaaaattttgtgaattttacgacccttttggacaaatttgac
caattttgaccaaatttcgatctttccgggggtaaaaa
Run BLAST on NCBI

transcript from alignment at sc0000059:233321..235450+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005727 ID=TCONS_00005727|Name=TCONS_00005727|organism=Clytia hemisphaerica|type=transcript|length=2130bp|location=Sequence derived from alignment at sc0000059:233321..235450+ (Clytia hemisphaerica)
CGAAATGCCACCGCAACCCATTTTGGTAAGTGTTTTTTTCATCCACAAAT
TCACTTATAACGAACTTAAGatttttaactaaaatttaTCTCAATAGGCC
ATTccaaaaaattggtaaaattggattttttttcaaattttcagaacctc
cttggattttttcctttttttggaCCACCTTCATTTTACTTACCACCCTA
GATTTTCCACCTCATTTTCTGACAAACATGAATTTTTGCACTCGAAAAAC
CAGACCattttattctcaacttcagttgagctacaatctgacaatgtctg
tgtgtctgtgtgtgtgtctgtctgtcacaaaaactttagggcagcctgga
gacttcaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcgccaaa
acgaggctaaaactttggggcagcctggagacttcagaAATGGTCatatt
tagctgaaatttggcaaacTTGTTCCTttggtaaatatctgggggtaatt
ttttcattttttgaaaatttttatttttggggcctggggacgagttttcc
gccaaaacgaggctaaaactttagagcAGAGCCTACAGGCctcaaaaatg
gttggattttgctgaaatttggcacacttactccttgggtgaatatctgg
gggtctacaattgggcctatgaataatttgaagccactgaagttgagccc
agtgcgttgcgcacgttagactatttttcatttttagccaatcagattgc
tcatatttttcatgttgacgatAAGAATAATTTCACTGcttcttctatca
ttatattgATAGTTACAGTATTTGTCAAATATTATTCTTGTTTCAGGACG
AGTTGcttcagaaaatcaaaacaatgaaacGCATTCTACCAATGAAAGTC
GTACAAATCACTGACGTTCAGCCTTTGCTTTCGAGTCACCAATACACAGC
TTGTGCTGCCATTTTGAATATCGCCAATGTTTTGTTTATGGGTTATTGTC
ATGGTGTCAAGTCTTTCATGAAAGAGCTAGTCACTaaggtatttttcttt
ttgacggaaattgattttttatcaAAGGTACTTACAGTGGTCCTAATCAA
TGaaatataagcccgaagggctagaagcgaatctctaacctttctcaggc
aagaaaaagtgaaaccttaaaaaaggtattttcgatgacagattgaatct
agcaatctCTTTGTTTTCTAGTTatattatttttcgaaatcaagcggtaa
attttagtttcaatctgtcatttgtgtagaAACCAGGCTGATCGCTTAAG
GCCgcacaactttggtaggattagGAATtgttgccatggtgattaactcc
cagcggattttattgaacctacttcctattcataaaagaatcgtttaatg
tctcaagggacataatcaccatggtaattgtttgaatacgaggcaagtga
tgttcgtgacgtaaattatgaaaaggtctatttcatcAACTTTTATTTTC
CAACTTTAGATTGTCACCCAAATTTGTAAGGAAGATTTTGAGAAGTTCTG
GTTTCTATTTGCAATGGATTTGTtagcaaaaatcaaaacaacacacAGCG
AACTATCATTGACAGTATGTAAAAACCAGGTTGAcaaatattggaaagat
atgTCGAACTTTAAGAGGGTAGAAATGGATTTAACGTAGTGGAAAACTTG
TTTTTgagaagagatttttttaaattttctatgAGCCCAGATCCGGGGGT
TACTAGGCAGGGTTACTAGCTTAcggggaaggggggggggtgccgcccga
cttttgaCCCTTGGATCCcgcttaccgggactaaaaatgagaaaacaaag
gaaaattttgtgaattttacgacccttttggacaaatttgaccaattttg
accaaatttcgatctttccgggggtaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003249XLOC_003249Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005727-exon-sc0000059-1491911889:233321..233345TCONS_00005727-exon-sc0000059-1491911889:233321..233345Clytia hemisphaericaexon
TCONS_00005727-exon-sc0000059-1510915933:233321..233345TCONS_00005727-exon-sc0000059-1510915933:233321..233345Clytia hemisphaericaexon
TCONS_00005727-exon-sc0000059-1575043694:233321..233345TCONS_00005727-exon-sc0000059-1575043694:233321..233345Clytia hemisphaericaexon
TCONS_00005727-exon-sc0000059-1491911889:234367..234558TCONS_00005727-exon-sc0000059-1491911889:234367..234558Clytia hemisphaericaexon
TCONS_00005727-exon-sc0000059-1510915933:234367..234558TCONS_00005727-exon-sc0000059-1510915933:234367..234558Clytia hemisphaericaexon
TCONS_00005727-exon-sc0000059-1575043694:234367..234558TCONS_00005727-exon-sc0000059-1575043694:234367..234558Clytia hemisphaericaexon
TCONS_00005727-exon-sc0000059-1491911889:235030..235450TCONS_00005727-exon-sc0000059-1491911889:235030..235450Clytia hemisphaericaexon
TCONS_00005727-exon-sc0000059-1510915933:235030..235450TCONS_00005727-exon-sc0000059-1510915933:235030..235450Clytia hemisphaericaexon
TCONS_00005727-exon-sc0000059-1575043694:235030..235450TCONS_00005727-exon-sc0000059-1575043694:235030..235450Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:233321..235450 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.28856	5.81092	5.12264	1.6251	4.25447	3.32981	3.3414	4.14278	2.82655	2.56428	0.743752	2.05282	1.60306	1.11249	2.3478	4.41198	0.979211	3.91267	0.18453	1.21157	1.75034	2.1836	2.32713	3.40527	1.83767	4.72379	0.0345889	0.347411	3.1461	5.14824
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005727 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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