TCONS_00058099 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058099
Unique NameTCONS_00058099
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length437

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058099 ID=TCONS_00058099|Name=TCONS_00058099|organism=Clytia hemisphaerica|type=transcript|length=437bp
CTCGTAATAAGCTGTACCAGTCTGATTACCATCATTAGATGCCTCAAAAT
TCCCATTTGAACAAAAACATGAATTATCTTCAGTGTAGAATccattcttc
tttttcaattttgtgcGACACTTCAAAATGCATTCTATCCGAGATCGAAC
ATTAATGCTTTGCAAATCTCCGGATGGAAGTACAAaaccattttgttttt
gaatgctCAAGTAATGAGCAGCAAAAGTGAACGATTGACGGTGAAGCAAT
AACAACCAAGGTATTAGAAAATTGGTCTGATACATTTCGAAGACACGTAC
AGAACTTATTTTCTATCACCTTTGAccgtttattgttcaacttttctcaa
aatgacTTTCATAAATTATCAATTGATCGATTTTACCTCCTTGACTCACa
attaaaaacaatttgattGATAAACCATGGTTTACTA
Run BLAST on NCBI

transcript from alignment at scaffold_305:114371..114807

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058099 ID=TCONS_00058099|Name=TCONS_00058099|organism=Clytia hemisphaerica|type=transcript|length=437bp|location=Sequence derived from alignment at scaffold_305:114371..114807 (Clytia hemisphaerica)
TAGTAAACCATGGTTTATCaatcaaattgtttttaattGTGAGTCAAGGA
GGTAAAATCGATCAATTGATAATTTATGAAAgtcattttgagaaaagttg
aacaataaacggTCAAAGGTGATAGAAAATAAGTTCTGTACGTGTCTTCG
AAATGTATCAGACCAATTTTCTAATACCTTGGTTGTTATTGCTTCACCGT
CAATCGTTCACTTTTGCTGCTCATTACTTGagcattcaaaaacaaaatgg
ttTTGTACTTCCATCCGGAGATTTGCAAAGCATTAATGTTCGATCTCGGA
TAGAATGCATTTTGAAGTGTCgcacaaaattgaaaaagaagaatggATTC
TACACTGAAGATAATTCATGTTTTTGTTCAAATGGGAATTTTGAGGCATC
TAATGATGGTAATCAGACTGGTACAGCTTATTACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036612XLOC_036612Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058099-exon-scaffold_305-1491911889:114371..114807TCONS_00058099-exon-scaffold_305-1491911889:114371..114807Clytia hemisphaericaexon
TCONS_00058099-exon-scaffold_305-1510915933:114371..114807TCONS_00058099-exon-scaffold_305-1510915933:114371..114807Clytia hemisphaericaexon
TCONS_00058099-exon-scaffold_305-1575043694:114371..114807TCONS_00058099-exon-scaffold_305-1575043694:114371..114807Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_305supercontigscaffold_305:114371..114807 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.839364	0.663276	0.600161	0.561863	0	0.649676	0	0	2.27672	1.61209	0.0883572	0	0.233623	0.359184	3.96986	2.94254	1.95581	4.18282	2.49778	3.24406	1.83772	2.68383	70.8369	57.1547	0.518125	0.175963
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058099 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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