|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058094 ID=TCONS_00058094|Name=TCONS_00058094|organism=Clytia hemisphaerica|type=transcript|length=1937bp
GGAATAATTGATATTATGGAAGAGCAACACAAGTTTGTACCCAGACTCCG
CAATGGTCTTGTGAGACTGCTTACTGCTGGTGATCTCATGACAGTTGAGA
GGGAAATTAACGCCCAAATCGATAAAGAGGATAGCTTCACCTCATCACAA
CGCTTGGAAGGATTAATCCCAATTTTAGCTGACTTTCATACatatggaaa
ttttttagaGcttATGTGGGACGTCCTTTATGATCCAGCTTCAAGTGCTG
ACGTTGGAACATTGTTTCAGGCACGAAACTACTTAAATGCAAGAAATGTA
AAAAGAGATCCAATGAAGAGTGTCAATGCTTGTGAAGACCTCATGATGAA
GTACTCTGAAGCGTTGATTGTTACAGCTTTCCAGACACACTGCAAGGAGA
AAGGTATATCTTTTAGAAATCACAGTACTCGAGAAGATGAATTCAAGACA
GCAATCAAAGATGTCGTTCAAACATATGTCCTTCCTGAAACAAAGGATAT
GTCCAAAATCGTTTCTCAGTTTGACTGCTCAGAATGCAAGAGCAAATTCA
AATCATTACAGAATCTGAAGAAACATCTCAAAGAAAAACATGATAACAAA
AAGTATCATCCATCAACAACACCAGACTGTGATCGAAAGATGAACTACCT
TAGAAATGCACTGGCACTCtgttttttatgcaaaaatttCATAGATGCAC
GAAATTTTGGAGACGGGGGACGAATTGTGAGACTTTACAAATATTTCATG
TTATTCTTCAGGGTGAATAATCAATATAAATATGCTGGTCAGGCCTTGCA
TCTTCTTGCTCAAATAAAGTGTCTTTTACCACCCGCACTTGCCTTTGAAA
TCATTTGGAACCGTTCAGTTAACACAAAGGGTAAGCCAGATTCGAATGTT
GAACTTGATAGACATCTTGAGCACAGAAATAAATACGCAAAAGAAAACAT
CAAAGGGTTGCACGGAAAAGTGACAGACAAGTCCATTGAAAGAATAAGTA
AATCATATGAGCAAATTGAAAACCACGTCAAAAAGCTAGATCAAACCCTT
GGGATCAAGGAACCAAGTGGAAAACATTCTAAGGTAAACTGGGAGAGTGA
TGTTGTTGAACTGATGAAACATTTTGATGATTGTGATTTATTGAAGTCTC
AAGATGGAAGAGTTTTCAAGTGTTTTCCAAACTTCCCTAACAATTATTTA
CATTACATGGACACTTTGGAATTGAAAAAATGGATCCTGAAAAATGTCAT
GAAATGTGCTCGAAATCATATCTACGAGAACAAAGGAACAATAACaaatg
aataaatcaacaaacgatgtatgttttctattttctacagttttttataa
tttttgtacATATATGTAAATAAAGAATGTGAATAATGTTTATAATGGAC
TTTTTTATTGACTTAATTTTATATATcctgatatttttaaaatttttaca
tttctcgTAATCCTTTGTGCTGCATTCTGAATTCAAACAATTGACTGTTT
TAAGTTTAGCTGGTAGCATCAAAACAATTTCCCAGAGGTAAAGAGGGAGA
GAGAGATAGAGGGAGGGGGAGAGAGAGATATTGACCTACACCTTGGTACT
TTAAAGCTTTGGAGTGTTTTCTTGATGTTAAGATTTATTATCTATGAATA
CTATATTATTGATACTTAGTTTGCAGAAGATTTTAGAAATACTTATGTCT
TCTGTCTTTTTATTTATTGTCTATGAGTACGTCATAATATatattattga
tatttttgatatttttatttgcagaagaattttgcaaaaatgttgtCTTC
TGTCTGTTAAGATTTATTATCTACCTTAAAGGAACTACCTCAAATTGTCA
TGGGAACTCATTCTtgcagtcaaaaaaaaatctgcatTTAGCAGGAACTA
AGTTTTGCGGTTTTAGCCTATTTTAGTTGAATTTCtc Run BLAST on NCBI protein sequence of TCONS_00058094-protein >TCONS_00058094-protein ID=TCONS_00058094-protein|Name=TCONS_00058094-protein|organism=Clytia hemisphaerica|type=polypeptide|length=434bp
GIIDIMEEQHKFVPRLRNGLVRLLTAGDLMTVEREINAQIDKEDSFTSSQ
RLEGLIPILADFHTYGNFLELMWDVLYDPASSADVGTLFQARNYLNARNV
KRDPMKSVNACEDLMMKYSEALIVTAFQTHCKEKGISFRNHSTREDEFKT
AIKDVVQTYVLPETKDMSKIVSQFDCSECKSKFKSLQNLKKHLKEKHDNK
KYHPSTTPDCDRKMNYLRNALALCFLCKNFIDARNFGDGGRIVRLYKYFM
LFFRVNNQYKYAGQALHLLAQIKCLLPPALAFEIIWNRSVNTKGKPDSNV
ELDRHLEHRNKYAKENIKGLHGKVTDKSIERISKSYEQIENHVKKLDQTL
GIKEPSGKHSKVNWESDVVELMKHFDDCDLLKSQDGRVFKCFPNFPNNYL
HYMDTLELKKWILKNVMKCARNHIYENKGTITNE Run BLAST on NCBI transcript from alignment at scaffold_305:239020..241147- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058094 ID=TCONS_00058094|Name=TCONS_00058094|organism=Clytia hemisphaerica|type=transcript|length=2128bp|location=Sequence derived from alignment at scaffold_305:239020..241147- (Clytia hemisphaerica)
GGAATAATTGATATTATGGAAGAGCAACACAAGTTTGTACCCAGACTCCG
CAATGGTCTTGTGAGACTGCTTACTGCTGGTGATCTCATGACAGTTGAGA
GGGAAATTAACGCCCAAATCGATAAAGAGGATAGCTTCACCTCATCACAA
CGCTTGGAAGGATTAATCCCAATTTTAGCTGACTTTCATACATATGGAAA
TTTTTTAGAGGTAAACTTAATTATGGAATTTTATCCTTCAAAATGTCCTT
CATCTGACTGTAAGATCCCTTTTCAAAATCCCAACATCTAGAGTTACTTT
ATTGAATGAAAATTTCCGAAACTGCGAAATTTTCATGCCGCGAAATTGTC
ATGCAATAAAGTAGTAAATAAGATTTCACATTTTCATCTTTCATTTTAAA
GCTTATGTGGGACGTCCTTTATGATCCAGCTTCAAGTGCTGACGTTGGAA
CATTGTTTCAGGCACGAAACTACTTAAATGCAAGAAATGTAAAAAGAGAT
CCAATGAAGAGTGTCAATGCTTGTGAAGACCTCATGATGAAGTACTCTGA
AGCGTTGATTGTTACAGCTTTCCAGACACACTGCAAGGAGAAAGGTATAT
CTTTTAGAAATCACAGTACTCGAGAAGATGAATTCAAGACAGCAATCAAA
GATGTCGTTCAAACATATGTCCTTCCTGAAACAAAGGATATGTCCAAAAT
CGTTTCTCAGTTTGACTGCTCAGAATGCAAGAGCAAATTCAAATCATTAC
AGAATCTGAAGAAACATCTCAAAGAAAAACATGATAACAAAAAGTATCAT
CCATCAACAACACCAGACTGTGATCGAAAGATGAACTACCTTAGAAATGC
ACTGGCACTCTGTTTTTTATGCAAAAATTTCATAGATGCACGAAATTTTG
GAGACGGGGGACGAATTGTGAGACTTTACAAATATTTCATGTTATTCTTC
AGGGTGAATAATCAATATAAATATGCTGGTCAGGCCTTGCATCTTCTTGC
TCAAATAAAGTGTCTTTTACCACCCGCACTTGCCTTTGAAATCATTTGGA
ACCGTTCAGTTAACACAAAGGGTAAGCCAGATTCGAATGTTGAACTTGAT
AGACATCTTGAGCACAGAAATAAATACGCAAAAGAAAACATCAAAGGGTT
GCACGGAAAAGTGACAGACAAGTCCATTGAAAGAATAAGTAAATCATATG
AGCAAATTGAAAACCACGTCAAAAAGCTAGATCAAACCCTTGGGATCAAG
GAACCAAGTGGAAAACATTCTAAGGTAAACTGGGAGAGTGATGTTGTTGA
ACTGATGAAACATTTTGATGATTGTGATTTATTGAAGTCTCAAGATGGAA
GAGTTTTCAAGTGTTTTCCAAACTTCCCTAACAATTATTTACATTACATG
GACACTTTGGAATTGAAAAAATGGATCCTGAAAAATGTCATGAAATGTGC
TCGAAATCATATCTACGAGAACAAAGGAACAATAACAAATGAATAAATCA
ACAAACGATGTATGTTTTCTATTTTCTACAGTTTTTTATAATTTTTGTAC
ATATATGTAAATAAAGAATGTGAATAATGTTTATAATGGACTTTTTTATT
GACTTAATTTTATATATCCTGATATTTTTAAAATTTTTACATTTCTCGTA
ATCCTTTGTGCTGCATTCTGAATTCAAACAATTGACTGTTTTAAGTTTAG
CTGGTAGCATCAAAACAATTTCCCAGAGGTAAAGAGGGAGAGAGAGATAG
AGGGAGGGGGAGAGAGAGATATTGACCTACACCTTGGTACTTTAAAGCTT
TGGAGTGTTTTCTTGATGTTAAGATTTATTATCTATGAATACTATATTAT
TGATACTTAGTTTGCAGAAGATTTTAGAAATACTTATGTCTTCTGTCTTT
TTATTTATTGTCTATGAGTACGTCATAATATATATTATTGATATTTTTGA
TATTTTTATTTGCAGAAGAATTTTGCAAAAATGTTGTCTTCTGTCTGTTA
AGATTTATTATCTACCTTAAAGGAACTACCTCAAATTGTCATGGGAACTC
ATTCTTGCAGTCAAAAAAAAATCTGCATTTAGCAGGAACTAAGTTTTGCG
GTTTTAGCCTATTTTAGTTGAATTTCTC Coding sequence (CDS) from alignment at scaffold_305:239020..241147- >TCONS_00058094 ID=TCONS_00058094|Name=TCONS_00058094|organism=Clytia hemisphaerica|type=CDS|length=2610bp|location=Sequence derived from alignment at scaffold_305:239020..241147- (Clytia hemisphaerica)
CTTATGTGGGACGTCCTTTATGATCCAGCTTCAAGTGCTGACGTTGGAAC
ATTGTTTCAGGCACGAAACTACTTAAATGCAAGAAATGTAAAAAGAGATC
CAATGAAGAGTGTCAATGCTTGTGAAGACCTCATGATGAAGTACTCTGAA
GCGTTGATTGTTACAGCTTTCCAGACACACTGCAAGGAGAAAGGTATATC
TTTTAGAAATCACAGTACTCGAGAAGATGAATTCAAGACAGCAATCAAAG
ATGTCGTTCAAACATATGTCCTTCCTGAAACAAAGGATATGTCCAAAATC
GTTTCTCAGTTTGACTGCTCAGAATGCAAGAGCAAATTCAAATCATTACA
GAATCTGAAGAAACATCTCAAAGAAAAACATGATAACAAAAAGTATCATC
CATCAACAACACCAGACTGTGATCGAAAGATGAACTACCTTAGAAATGCA
CTGGCACTCTGTTTTTTATGCAAAAATTTCATAGATGCACGAAATTTTGG
AGACGGGGGACGAATTGTGAGACTTTACAAATATTTCATGTTATTCTTCA
GGGTGAATAATCAATATAAATATGCTGGTCAGGCCTTGCATCTTCTTGCT
CAAATAAAGTGTCTTTTACCACCCGCACTTGCCTTTGAAATCATTTGGAA
CCGTTCAGTTAACACAAAGGGTAAGCCAGATTCGAATGTTGAACTTGATA
GACATCTTGAGCACAGAAATAAATACGCAAAAGAAAACATCAAAGGGTTG
CACGGAAAAGTGACAGACAAGTCCATTGAAAGAATAAGTAAATCATATGA
GCAAATTGAAAACCACGTCAAAAAGCTAGATCAAACCCTTGGGATCAAGG
AACCAAGTGGAAAACATTCTAAGGTAAACTGGGAGAGTGATGTTGTTGAA
CTGATGAAACATTTTGATGATTGTGATTTATTGAAGTCTCAAGATGGAAG
AGTTTTCAAGTGTTTTCCAAACTTCCCTAACAATTATTTACATTACATGG
ACACTTTGGAATTGAAAAAATGGATCCTGAAAAATGTCATGAAATGTGCT
CGAAATCATATCTACGAGAACAAAGGAACAATAACAAATGAATAAGGAAT
AATTGATATTATGGAAGAGCAACACAAGTTTGTACCCAGACTCCGCAATG
GTCTTGTGAGACTGCTTACTGCTGGTGATCTCATGACAGTTGAGAGGGAA
ATTAACGCCCAAATCGATAAAGAGGATAGCTTCACCTCATCACAACGCTT
GGAAGGATTAATCCCAATTTTAGCTGACTTTCATACATATGGAAATTTTT
TAGAGCTTATGTGGGACGTCCTTTATGATCCAGCTTCAAGTGCTGACGTT
GGAACATTGTTTCAGGCACGAAACTACTTAAATGCAAGAAATGTAAAAAG
AGATCCAATGAAGAGTGTCAATGCTTGTGAAGACCTCATGATGAAGTACT
CTGAAGCGTTGATTGTTACAGCTTTCCAGACACACTGCAAGGAGAAAGGT
ATATCTTTTAGAAATCACAGTACTCGAGAAGATGAATTCAAGACAGCAAT
CAAAGATGTCGTTCAAACATATGTCCTTCCTGAAACAAAGGATATGTCCA
AAATCGTTTCTCAGTTTGACTGCTCAGAATGCAAGAGCAAATTCAAATCA
TTACAGAATCTGAAGAAACATCTCAAAGAAAAACATGATAACAAAAAGTA
TCATCCATCAACAACACCAGACTGTGATCGAAAGATGAACTACCTTAGAA
ATGCACTGGCACTCTGTTTTTTATGCAAAAATTTCATAGATGCACGAAAT
TTTGGAGACGGGGGACGAATTGTGAGACTTTACAAATATTTCATGTTATT
CTTCAGGGTGAATAATCAATATAAATATGCTGGTCAGGCCTTGCATCTTC
TTGCTCAAATAAAGTGTCTTTTACCACCCGCACTTGCCTTTGAAATCATT
TGGAACCGTTCAGTTAACACAAAGGGTAAGCCAGATTCGAATGTTGAACT
TGATAGACATCTTGAGCACAGAAATAAATACGCAAAAGAAAACATCAAAG
GGTTGCACGGAAAAGTGACAGACAAGTCCATTGAAAGAATAAGTAAATCA
TATGAGCAAATTGAAAACCACGTCAAAAAGCTAGATCAAACCCTTGGGAT
CAAGGAACCAAGTGGAAAACATTCTAAGGTAAACTGGGAGAGTGATGTTG
TTGAACTGATGAAACATTTTGATGATTGTGATTTATTGAAGTCTCAAGAT
GGAAGAGTTTTCAAGTGTTTTCCAAACTTCCCTAACAATTATTTACATTA
CATGGACACTTTGGAATTGAAAAAATGGATCCTGAAAAATGTCATGAAAT
GTGCTCGAAATCATATCTACGAGAACAAAGGAACAATAACAAATGAATAA
GGAATAATTGATATTATGGAAGAGCAACACAAGTTTGTACCCAGACTCCG
CAATGGTCTTGTGAGACTGCTTACTGCTGGTGATCTCATGACAGTTGAGA
GGGAAATTAACGCCCAAATCGATAAAGAGGATAGCTTCACCTCATCACAA
CGCTTGGAAGGATTAATCCCAATTTTAGCTGACTTTCATACATATGGAAA
TTTTTTAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058094-exon-scaffold_305-1575043694:240938..241147 | TCONS_00058094-exon-scaffold_305-1575043694:240938..241147 | Clytia hemisphaerica | exon |
| TCONS_00058094-exon-scaffold_305-1575043694:239020..240746 | TCONS_00058094-exon-scaffold_305-1575043694:239020..240746 | Clytia hemisphaerica | exon |
| TCONS_00058094-exon-scaffold_305-1510915933:240938..241147 | TCONS_00058094-exon-scaffold_305-1510915933:240938..241147 | Clytia hemisphaerica | exon |
| TCONS_00058094-exon-scaffold_305-1510915933:239020..240746 | TCONS_00058094-exon-scaffold_305-1510915933:239020..240746 | Clytia hemisphaerica | exon |
| TCONS_00058094-exon-scaffold_305-1491911889:240938..241147 | TCONS_00058094-exon-scaffold_305-1491911889:240938..241147 | Clytia hemisphaerica | exon |
| TCONS_00058094-exon-scaffold_305-1491911889:239020..240746 | TCONS_00058094-exon-scaffold_305-1491911889:239020..240746 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_305 | supercontig | scaffold_305:239020..241147 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
|
