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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058158 ID=TCONS_00058158|Name=TCONS_00058158|organism=Clytia hemisphaerica|type=transcript|length=1919bp
tttttttaacactcaaAAGCATTAGTGgagtatttttttttcgttttagt
tgttcttttctGAGTTATTTAAAATAATGGACTTAGCATTTTATATTGCA
ACGTGCACCATTTTTCATTTGTTGTATTTGGCGCTCCATCTTGGTACAAT
CGATAGATGTGCTTCTCCGGGTCTTTACAAATACTTCAGAGCAATCTTTG
TCCTTTttttgatgGTAAGTGACATTGTATTTGTGGTGATCTTTCTCTTC
GTCCCATCTATACCACAAGCATACTACCTTGTCTCATTTTCGTGGTTTGC
ACTGTTACTTATAAATTGGAGTTGCGTAAATTGTTGGAATCGTTGGGCAG
GAATAAGAATCGAAAAAGAATGGGGCACAGATGACAACGGTAATCCAAAA
TGTACCAAGCGGTATAGACACTCGATGAAAGAAATCAAGGAAATTCTGGA
TGAAAATTTACCAAAGGAGCCGAAAGTGATTGTTCAATGCGAGGCTGTGG
AACCTCGAACTTCGTGCTGCAGAAAACAAAGAGTTATTTGGAGCAATCAG
AAAGAGTTTGAATTTCAACATTGGATCGATGTGACTGAACAACATTTGGT
GAAATCACAAATTGAAGAAGCGATTTTCGgtgaattgaaaattgatttcg
aATTTGGTGACGAAGAAACAAAAGAGTCATATGAACAACACGTTCAGAAT
CTTGTGAAAGAAGCAAAGCAACATTCTCCAAACGATCAAGTCAATATCAA
ACAAATTTTCGAAGTCGGTGAAAAAGATATCAAAACCTACAGACGGTCGT
TTTatggaaagaaaattctttttggaaAACCATTCGTGTGTCTTCAAGGT
GTTTTTCCTCAAATCGAACTTtcgttcaaaattttaaaatggctTCTCGA
AAAAATTGGTTGCAAAAGTTTATTAACCAAAggaattgtaaacaaaaaag
taatatgTGATAGAAATATTGTAGCTGTATAGCATTTGTGATCAATAATT
TTGTACCATTTTAAATGATATAACAGAGTGGAGACTAATTGCACTAATGG
CTTGTCCCACGGTACGTTACTGTCTTTGTGTCTAAAATATAAAAGTAAAt
gccgctacccactcagcattttatggacGTCGAACAAGGCGCACAgctta
attattgcataaattacataaatcaagcCTTCAAAGGCTGTCGCCTTGGG
CGcaacaagagttgaaacttttcaacttttttcgctaCGCTGTACGGCTT
CtcaattgttcttttttaaatagccAATCAGAATAGACATTTAACTCTCT
TGCACCGTGTGCAAAAAGATATCAACAATAGAAACAAGAAAAATGTACAG
CATATCTCCCCTTTATTTTGGATCAGTGGAATGGGAAAAGCGTTCAGCGA
CCAAAGCGCCCGAGCTGTGCGCCTTGttcgccgaccataaaatgctgagt
gggtagcggcctttAACCAATCAATCTGCTAGACAGACCTGTTGGGAAAA
GTTTATTTACATTCACGAAAGTTTAGAAATTGTAGAAACTCCTTCAAAGT
TCGCTTCATTTTTCATAAAGCCAGTAAATTTGGCTGAAGCTGCGCCTGTT
ATTATTTTTCTGTGGTCTTCAGGCTTAATCAAATTAACTAATTATTCATT
TAATTATTGGAATGAGGTCTTTATGAAATCTTAAGCTAGCGTCATTTATC
TATTCTTAAGGCGTGGTTACATTACATTAgatggttttttttataagcaa
ctgtCAGGCTCATGtatgcttaagttttcaaagcatccaggcatagttta
tgcttattatatgcttaagaatcatgcttatgattcaccccgagccaagt
ttttaatgcaatttcaaaaattttgtaaaattttgctcAGATTTTGGGAG
TGTGGaatttttacttgac Run BLAST on NCBI transcript from alignment at scaffold_307:90520..93861- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058158 ID=TCONS_00058158|Name=TCONS_00058158|organism=Clytia hemisphaerica|type=transcript|length=3342bp|location=Sequence derived from alignment at scaffold_307:90520..93861- (Clytia hemisphaerica)
TTTTTTTAACACTCAAAAGCATTAGTGGAGTATTTTTTTTTCGTTTTAGT
TGTTCTTTTCTGAGTTATTTAAAATAATGGACTTAGCATTTTATATTGCA
ACGTGCACCATTTTTCATTTGTTGTATTTGGCGCTCCATCTTGGTACAAT
CGATAGATGTGCTTCTCCGGGTCTTTACAAATACTTCAGAGCAATCTTTG
TCCTTTGTAAGTTCTAAGAATTCTTTTAAGAAAGAAATACTTTACACATG
AAGCTTAGTATATTCTTCTCAAATCAAATCGCTCTTATATACAGAAGTTA
AAGTCTGTCTCGATATAATTTGCAGCGGAAACAAAAAAAGGCTATAACTT
TTGATAGAATTCGAATTCGATTGCGGTTTTGTTCTTGTTGGAAAGACAAA
CATGAGTGGGATGTTATCAAATAGAGATAACATAGAAAAGATCGGAAAAT
GAAGATTGAAAATGAAGAAGAAGAAAATCAACTTTTTCAATAATTGTGCT
ATAATTATTATTTTCAAACGAGTGATTTTTTGATCTTGAAACATCATTAA
TGTGAAAAAATTTTCAAAAAATCTTATTCCATTGAATAGTATAGTCAAAA
GTTTATCACTGATTGACTTCAAAAACCATCAAAAAACAACCAGAAAGAGC
CATTGTTAAGTCAAACAAGGCAAAGCTTTAAGCCGTATTTCTTGACTGAA
TGAATATATTTTGATTTTTTTTGGATTTATAACGTTCTAAGATTAAAAAA
ATTTCTGTTACAAAAATTAAGATCATAGCATTATTCTACAAGAAGTTGAT
TTTCTTCTTAATTTTTCATCTTTGTTTTTCAATTTTTGATTTTTTTAGCT
TTTTAGATAACATTTCAATCAAAATTATATTTTTTAAACGAGCACAAAAC
TACTACTTTCTAATTCGAATGCTATCAAAAGTTACAGCCTTTTTTGTCCC
TGATGCAAATTATATTGAGACATACTTTAACTTAAGTTAAGTTAAGTTAA
AGCTGAACGTTTTTTAATAGGACCATTCACAATTTTCGAAAACTTCAGAC
ATTCTTAACTTTTTGAGTTTTAAGCCTAAAAAATGTTCTTAACATGTTCT
TATATTTGAGCCATCAAAGTTCCATCATTTATATATTTTGTTCTTATAAA
AAACGTCCATCACCTTTAGAACAAAGCTTCAAGGTACAAAGAATTGGAAG
TTTTGAGCTAAAGACCTTATTTGGATATTGCCTTATTATCAGTATGTACT
ATCTGTTCAATAATTGTGAACTAAGGTCGGCTCAAAGAAATCGGCAATTT
TTGATACATTTTTCTTCTTCAAACCGACGACATACGTCGTTATCTCTTGG
CTTCGGTGGAACTTTTTCTCACATTGCAGATGAAACTTGTGTACCGTAAT
CCAAATGAGAATATAAATTCTATTGTTCTCAGGCCATAAAGTCGAATTGG
AATGGTTTTGAAATGCAATTTTTTTCCATTGAATTTCAGATAGGAATGAA
AATAAGTCAATTTTCCAGTGAGGCTGAAATAGGTGGGTATTTTCCCACCG
GGGATAAAGTTTAGCCAAATTTTCCATCGGGTCTATCACCTCTCTCGGAG
GTCTAACAATATTTATTTCAAATTTTCAGTTTTGATGGTAAGTGACATTG
TATTTGTGGTGATCTTTCTCTTCGTCCCATCTATACCACAAGCATACTAC
CTTGTCTCATTTTCGTGGTTTGCACTGTTACTTATAAATTGGAGTTGCGT
AAATTGTTGGAATCGTTGGGCAGGAATAAGAATCGAAAAAGAATGGGGCA
CAGATGACAACGGTAATCCAAAATGTACCAAGCGGTATAGACACTCGATG
AAAGAAATCAAGGAAATTCTGGATGAAAATTTACCAAAGGAGCCGAAAGT
GATTGTTCAATGCGAGGCTGTGGAACCTCGAACTTCGTGCTGCAGAAAAC
AAAGAGTTATTTGGAGCAATCAGAAAGAGTTTGAATTTCAACATTGGATC
GATGTGACTGAACAACATTTGGTGAAATCACAAATTGAAGAAGCGATTTT
CGGTGAATTGAAAATTGATTTCGAATTTGGTGACGAAGAAACAAAAGAGT
CATATGAACAACACGTTCAGAATCTTGTGAAAGAAGCAAAGCAACATTCT
CCAAACGATCAAGTCAATATCAAACAAATTTTCGAAGTCGGTGAAAAAGA
TATCAAAACCTACAGACGGTCGTTTTATGGAAAGAAAATTCTTTTTGGAA
AACCATTCGTGTGTCTTCAAGGTGTTTTTCCTCAAATCGAACTTTCGTTC
AAAATTTTAAAATGGCTTCTCGAAAAAATTGGTTGCAAAAGTTTATTAAC
CAAAGGAATTGTAAACAAAAAAGTAATATGTGATAGAAATATTGTAGCTG
TATAGCATTTGTGATCAATAATTTTGTACCATTTTAAATGATATAACAGA
GTGGAGACTAATTGCACTAATGGCTTGTCCCACGGTACGTTACTGTCTTT
GTGTCTAAAATATAAAAGTAAATGCCGCTACCCACTCAGCATTTTATGGA
CGTCGAACAAGGCGCACAGCTTAATTATTGCATAAATTACATAAATCAAG
CCTTCAAAGGCTGTCGCCTTGGGCGCAACAAGAGTTGAAACTTTTCAACT
TTTTTCGCTACGCTGTACGGCTTCTCAATTGTTCTTTTTTAAATAGCCAA
TCAGAATAGACATTTAACTCTCTTGCACCGTGTGCAAAAAGATATCAACA
ATAGAAACAAGAAAAATGTACAGCATATCTCCCCTTTATTTTGGATCAGT
GGAATGGGAAAAGCGTTCAGCGACCAAAGCGCCCGAGCTGTGCGCCTTGT
TCGCCGACCATAAAATGCTGAGTGGGTAGCGGCCTTTAACCAATCAATCT
GCTAGACAGACCTGTTGGGAAAAGTTTATTTACATTCACGAAAGTTTAGA
AATTGTAGAAACTCCTTCAAAGTTCGCTTCATTTTTCATAAAGCCAGTAA
ATTTGGCTGAAGCTGCGCCTGTTATTATTTTTCTGTGGTCTTCAGGCTTA
ATCAAATTAACTAATTATTCATTTAATTATTGGAATGAGGTCTTTATGAA
ATCTTAAGCTAGCGTCATTTATCTATTCTTAAGGCGTGGTTACATTACAT
TAGATGGTTTTTTTTATAAGCAACTGTCAGGCTCATGTATGCTTAAGTTT
TCAAAGCATCCAGGCATAGTTTATGCTTATTATATGCTTAAGAATCATGC
TTATGATTCACCCCGAGCCAAGTTTTTAATGCAATTTCAAAAATTTTGTA
AAATTTTGCTCAGATTTTGGGAGTGTGGAATTTTTACTTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058158-exon-scaffold_307-1575043694:93656..93861 | TCONS_00058158-exon-scaffold_307-1575043694:93656..93861 | Clytia hemisphaerica | exon |
| TCONS_00058158-exon-scaffold_307-1575043694:90520..92232 | TCONS_00058158-exon-scaffold_307-1575043694:90520..92232 | Clytia hemisphaerica | exon |
| TCONS_00058158-exon-scaffold_307-1510915933:93656..93861 | TCONS_00058158-exon-scaffold_307-1510915933:93656..93861 | Clytia hemisphaerica | exon |
| TCONS_00058158-exon-scaffold_307-1510915933:90520..92232 | TCONS_00058158-exon-scaffold_307-1510915933:90520..92232 | Clytia hemisphaerica | exon |
| TCONS_00058158-exon-scaffold_307-1491911889:93656..93861 | TCONS_00058158-exon-scaffold_307-1491911889:93656..93861 | Clytia hemisphaerica | exon |
| TCONS_00058158-exon-scaffold_307-1491911889:90520..92232 | TCONS_00058158-exon-scaffold_307-1491911889:90520..92232 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_307 | supercontig | scaffold_307:90520..93861 - |
Blast
The following BLAST results are available for this feature:
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