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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058202 ID=TCONS_00058202|Name=TCONS_00058202|organism=Clytia hemisphaerica|type=transcript|length=1481bpRun BLAST on NCBI transcript from alignment at scaffold_308:138369..163278- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058202 ID=TCONS_00058202|Name=TCONS_00058202|organism=Clytia hemisphaerica|type=transcript|length=24910bp|location=Sequence derived from alignment at scaffold_308:138369..163278- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00058202 vs. Swiss-Prot (Human)
Match: ARNT (Aryl hydrocarbon receptor nuclear translocator OS=Homo sapiens GN=ARNT PE=1 SV=1) HSP 1 Score: 365.155 bits (936), Expect = 1.266e-116 Identity = 192/374 (51.34%), Postives = 253/374 (67.65%), Query Frame = 1
Query: 388 DDDHFNGGKPKNARFESKEQS--KERFARENHSEIERRRRNKMNAYINELSDMVPSCNGLIRKPDKLTILKMAVSYMKSLKGDP-SAPEGSFKPTFLSDQELKHLVLEAADGFLFAVDCSSGNILYVSDSVTPVLNQSQNEWINKSFYDVIHPEDINKIKDQLNT-EVSNDTRILDLKTGNVRTDGNSPANSLANGSRRNFIVRMKCGNYEGDCEDVDAHLMEIKNRCKEKRISYKD--EAYSVVHCTGYIR----DANQLHDTEDEMMQQIQSDKGDLGGGELCLVAIGRLQPTSMPTSKDLIESAPATEFITRQTLDGRFSFVDQRVTEILGYRPIDLLGKLCYEFYSENDVDHMKESFEQVLKLKGQPLTI 1479
DDD + K + AR + ++ S KER ARENHSEIERRRRNKM AYI ELSDMVP+C+ L RKPDKLTIL+MAVS+MKSL+G ++ +GS+KP+FL+DQELKHL+LEAADGFLF V C +G ++YVSDSVTPVLNQ Q+EW + YD +HP+D++K+++QL+T E + RILDLKTG V+ +G + + GSRR+FI RM+CG+ D V+ L ++NRC+ S KD + VVHCTGYI+ L D + E Q G + CLVAIGRLQ TS P D+ TEFI+R ++G F+FVD R +GY+P +LLGK EF D +++SF+QV+KLKGQ L++
Sbjct: 63 DDDQMSNDKERFARSDDEQSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLRGTGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQVHPDDVDKLREQLSTSENALTGRILDLKTGTVKKEGQQSSMRMCMGSRRSFICRMRCGSSSVDPVSVN-RLSFVRNRCRNGLGSVKDGEPHFVVVHCTGYIKAWPPAGVSLPDDDPEAGQ----------GSKFCLVAIGRLQVTSSPNCTDMSNVCQPTEFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSV 425 The following BLAST results are available for this feature:
BLAST of TCONS_00058202 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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