TCONS_00058329 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058329
Unique NameTCONS_00058329
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length384

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058329 ID=TCONS_00058329|Name=TCONS_00058329|organism=Clytia hemisphaerica|type=transcript|length=384bp
TGTGATCACAACATGACAGCCGtaaccactttcgatttcgcaacAAGTTT
GActgtttgcaaaattttggtacCTAATCCTGGTTTGCTGCACAGCAGAC
TTACTTGGTATTGGCAGCAAAATGGAATTCAAAGCAGCTAGCTGCTTTCT
CCTTTTTCTCTTACCACTGATAAATGGCCAAAGCTCAGATTTATTTATTT
CTGTTAACCCTGAAACAAACATGCTTGTCGACAGTTTAGGAAGAGAGCGA
ATTTTCCACGGGACAAACGTTGTCGTAAAACACAAACCATTTCATCCAGA
ATTGGAAGGGTTTGATGAACATTCCTTTTCAGAAACTGATATGAAGCTGC
TACAAAGTCTTGGCTTGAATACCATAAGATTGGG
Run BLAST on NCBI

transcript from alignment at scaffold_309:80071..80454

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058329 ID=TCONS_00058329|Name=TCONS_00058329|organism=Clytia hemisphaerica|type=transcript|length=384bp|location=Sequence derived from alignment at scaffold_309:80071..80454 (Clytia hemisphaerica)
CCCAATCTTATGGTATTCAAGCCAAGACTTTGTAGCAGCTTCATATCAGT
TTCTGAAAAGGAATGTTCATCAAACCCTTCCAATTCTGGATGAAATGGTT
TGTGTTTTACGACAACGTTTGTCCCGTGGAAAATTCGCTCTCTTCCTAAA
CTGTCGACAAGCATGTTTGTTTCAGGGTTAACAGAAATAAATAAATCTGA
GCTTTGGCCATTTATCAGTGGTAAGAGAAAAAGGAGAAAGCAGCTAGCTG
CTTTGAATTCCATTTTGCTGCCAATACCAAGTAAGTCTGCTGTGCAGCAA
ACCAGGATTAGgtaccaaaattttgcaaacagTCAAACTTgttgcgaaat
cgaaagtggttaCGGCTGTCATGTTGTGATCACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036738XLOC_036738Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058329-exon-scaffold_309-1491911889:80071..80454TCONS_00058329-exon-scaffold_309-1491911889:80071..80454Clytia hemisphaericaexon
TCONS_00058329-exon-scaffold_309-1510915933:80071..80454TCONS_00058329-exon-scaffold_309-1510915933:80071..80454Clytia hemisphaericaexon
TCONS_00058329-exon-scaffold_309-1575043694:80071..80454TCONS_00058329-exon-scaffold_309-1575043694:80071..80454Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_309supercontigscaffold_309:80071..80454 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.29591	7.33745	2.72481	0	0	0	0	0	1.79593	1.88858	0.911249	2.71094	2.44376	2.61576	4.34909	5.52045	2.71061	2.93158	3.83995	2.93907	9.1795	10.9632	8.36874	13.0768	4.04152	0	1.5731	4.95696	11.0797	11.1999
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058329 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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