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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058227 ID=TCONS_00058227|Name=TCONS_00058227|organism=Clytia hemisphaerica|type=transcript|length=559bp
TCCTTTTTAGAAGTATCTTGTCAAACACCAACgttataaaacaaaatggc
tgacatTAACAATCAACAAGCTAAGATGGTCATGGATGCAGCAATTGCAA
AATGTAaagaaattgacgtcaaaatgaaCGTGGCTATCGTTGATGCAGGA
GCCAACCTTAAAGCTTTCGCACGTATGGACGGAGCATGGTTAGGAAGTAT
TGATATCGCTATCAAGAAAGCTAAAACTGCACGATGCTTTGATATGCCTT
CCGCAGCAATTGGACAAATTTCGCAACCTAATGGGGAACTATTCAATATC
GAACATAGCAACGGTGGTTTGATTACTTTTGGTGGAGGTATTCCAATCAA
ATACAATGGACAAGTTATCGGTGCAATCGGTGTTTCTGGCAGCTCTGTGG
CAAATGATGTGATTGTTGCTGAAGCTGGCGTTGCTGTAATCAACTAAAAT
CAGCTTTCATCAGAAATCTTAGATAGATATCTTGATATCTTGATATCACT
GAGCTCACATATCATTCATATTAGAAGTTTCATCGTCATGAATATTGAGG
GTATTATAT Run BLAST on NCBI protein sequence of TCONS_00058227-protein >TCONS_00058227-protein ID=TCONS_00058227-protein|Name=TCONS_00058227-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MADINNQQAKMVMDAAIAKCKEIDVKMNVAIVDAGANLKAFARMDGAWLG
SIDIAIKKAKTARCFDMPSAAIGQISQPNGELFNIEHSNGGLITFGGGIP
IKYNGQVIGAIGVSGSSVANDVIVAEAGVAVIN Run BLAST on NCBI transcript from alignment at scaffold_309:323712..325529+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058227 ID=TCONS_00058227|Name=TCONS_00058227|organism=Clytia hemisphaerica|type=transcript|length=1818bp|location=Sequence derived from alignment at scaffold_309:323712..325529+ (Clytia hemisphaerica)
TCCTTTTTAGAAGTATCTTGTCAAACACCAACgttataaaacaaaatggc
tgacatTAACAATCAACAAGCTAAGATGGTCATGGATGCAGCAATTGCAA
AATGTAaagaaattgacgtcaaaatgaaCGTGGCTATCGTTGATGCAGGT
TCGTGTGGTTTTTCATCTTCCTTATTActataacacccccttctcgaAGA
CCCACTGGGAGCCCTTCCCAATTTTTAGTGGGatgggttcccagtgggtc
tgtgagaagaggttCTATAACTACGcccttgtgtcacagacccgcgagtc
ccactggaaaatttcgACTCAAGTGGGAAAATACAATTTAAGCccctggg
aaattgacttttatttcaCTCCCTTTGAAAATATATGTGAAAATCCCATC
ACTTTTTAGCTTGTAACGAGACCATTGAATtttaagcccaaagggctaga
ggcgagactcctggatgggaaatgaaaccacttatttcccatccagaacg
cccgcgcatagtttttacacaaacgccggattggaACTAAAATCTTTCGC
TAGATTTCtgaaaatgtagtcctccaaaacaaaggaaccgctatcTAGAT
AcgatccgtcgtcatgattacggcgcgttctatacGCGTTTTAGATGGGA
ACTAAGTGGCTTccatttctcttgcctgagaaggttTAAAGTTTCACCTC
TAGCCcctcgggcttgaaactcaatgatggACACTGTAATAACAAAATGT
TTTCTCTACTTAGGAGCCAACCTTAAAGCTTTCGCACGTATGGACGGAGC
ATGGTTAGGAAGTATTGATATCGCTATCAAGAAAGCTAAAACTGCACGAT
GCTTTGATATGCCTTCCGCAGCAATTGGACAAATTTCGCAACCTAATGGG
GAACTATTCAATATCGAACATAGCAACGGTAGGTTGAATGGAAAGCCGAc
acgtttatttataagaacaaactatataataacataaggcttcggtggcc
aaaattttaagaacaagttaagaacattttaaggctttatgagctccaaa
acacaaaaatactcaaaaaaatgctgaaaataagaacatgttaagaaaat
ttttaggcttgaaacccaaaaagttgagaaggcttcaaaatttggatgtt
cttataaaaaacgttagTCTTGAGTAGCTATTAAATACCTCTCTGCTTGT
CAATTCTCTTGAACTTACCTACTAACTACCCCCTTTAGTTATAGTACTTC
ATCCAGTctattgatatttttcaaattaactttgactgaaatcctaccta
ggtcacgtatGAAATTACAATAGagtttcagcgcttgaccaatcagaagc
ttcatggatttttgaaaacaatagcaactaTATTTCTTTCactattcact
ttttttgcctgtgatggcttgaagcacgacatctagcccttcgggctacA
TAAATATATGGTTACAACCCCCCACTGTTAATGAAGATTTGAAAGTTCTT
TTGCCTCCTCTTTATCGGCTAATATTGAACCTGCTCATatgagattgttc
ttaattattCTCTTTTCAACAGGTGGTTTGATTACTTTTGGTGGAGGTAT
TCCAATCAAATACAATGGACAAGTTATCGGTGCAATCGGTGTTTCTGGCA
GCTCTGTGGCAAATGATGTGATTGTTGCTGAAGCTGGCGTTGCTGTAATC
AACTAAAATCAGCTTTCATCAGAAATCTTAGATAGATATCTTGATATCTT
GATATCACTGAGCTCACATATCATTCATATTAGAAGTTTCATCGTCATGA
ATATTGAGGGTATTATAT Coding sequence (CDS) from alignment at scaffold_309:323712..325529+ >TCONS_00058227 ID=TCONS_00058227|Name=TCONS_00058227|organism=Clytia hemisphaerica|type=CDS|length=1206bp|location=Sequence derived from alignment at scaffold_309:323712..325529+ (Clytia hemisphaerica)
atggctgacatTAACAATCAACAAGCTAAGATGGTCATGGATGCAGCAAT
TGCAAAATGTAaagaaattgacgtcaaaatgaaCGTGGCTATCGTTGATG
CAGGAGCCAACCTTAAAGCTTTCGCACGTATGGACGGAGCATGGTTAGGA
AGTATTGATATCGCTATCAAGAAAGCTAAAACTGCACGATGCTTTGATAT
GCCTTCCGCAGCAATTGGACAAATTTCGCAACCTAATGGGGAACTATTCA
ATATCGAACATAGCAACGGTGGTTTGATTACTTTTGGTGGAGGTATTCCA
ATCAAATACAATGGACAAGTTATCGGTGCAATCGGTGTTTCTGGCAGCTC
TGTGGCAAATGATGTGATTGTTGCTGAAGCTGGCGTTGCTGTAATCAACT
AAatggctgacatTAACAATCAACAAGCTAAGATGGTCATGGATGCAGCA
ATTGCAAAATGTAaagaaattgacgtcaaaatgaaCGTGGCTATCGTTGA
TGCAGGAGCCAACCTTAAAGCTTTCGCACGTATGGACGGAGCATGGTTAG
GAAGTATTGATATCGCTATCAAGAAAGCTAAAACTGCACGATGCTTTGAT
ATGCCTTCCGCAGCAATTGGACAAATTTCGCAACCTAATGGGGAACTATT
CAATATCGAACATAGCAACGGTGGTTTGATTACTTTTGGTGGAGGTATTC
CAATCAAATACAATGGACAAGTTATCGGTGCAATCGGTGTTTCTGGCAGC
TCTGTGGCAAATGATGTGATTGTTGCTGAAGCTGGCGTTGCTGTAATCAA
CTAAatggctgacatTAACAATCAACAAGCTAAGATGGTCATGGATGCAG
CAATTGCAAAATGTAaagaaattgacgtcaaaatgaaCGTGGCTATCGTT
GATGCAGGAGCCAACCTTAAAGCTTTCGCACGTATGGACGGAGCATGGTT
AGGAAGTATTGATATCGCTATCAAGAAAGCTAAAACTGCACGATGCTTTG
ATATGCCTTCCGCAGCAATTGGACAAATTTCGCAACCTAATGGGGAACTA
TTCAATATCGAACATAGCAACGGTGGTTTGATTACTTTTGGTGGAGGTAT
TCCAATCAAATACAATGGACAAGTTATCGGTGCAATCGGTGTTTCTGGCA
GCTCTGTGGCAAATGATGTGATTGTTGCTGAAGCTGGCGTTGCTGTAATC
AACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058227-exon-scaffold_309-1491911889:323712..323859 | TCONS_00058227-exon-scaffold_309-1491911889:323712..323859 | Clytia hemisphaerica | exon |
| TCONS_00058227-exon-scaffold_309-1510915933:323712..323859 | TCONS_00058227-exon-scaffold_309-1510915933:323712..323859 | Clytia hemisphaerica | exon |
| TCONS_00058227-exon-scaffold_309-1575043694:323712..323859 | TCONS_00058227-exon-scaffold_309-1575043694:323712..323859 | Clytia hemisphaerica | exon |
| TCONS_00058227-exon-scaffold_309-1491911889:324475..324639 | TCONS_00058227-exon-scaffold_309-1491911889:324475..324639 | Clytia hemisphaerica | exon |
| TCONS_00058227-exon-scaffold_309-1510915933:324475..324639 | TCONS_00058227-exon-scaffold_309-1510915933:324475..324639 | Clytia hemisphaerica | exon |
| TCONS_00058227-exon-scaffold_309-1575043694:324475..324639 | TCONS_00058227-exon-scaffold_309-1575043694:324475..324639 | Clytia hemisphaerica | exon |
| TCONS_00058227-exon-scaffold_309-1491911889:325284..325529 | TCONS_00058227-exon-scaffold_309-1491911889:325284..325529 | Clytia hemisphaerica | exon |
| TCONS_00058227-exon-scaffold_309-1510915933:325284..325529 | TCONS_00058227-exon-scaffold_309-1510915933:325284..325529 | Clytia hemisphaerica | exon |
| TCONS_00058227-exon-scaffold_309-1575043694:325284..325529 | TCONS_00058227-exon-scaffold_309-1575043694:325284..325529 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_309 | supercontig | scaffold_309:323712..325529 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005624 | Haem_degrading |
Blast
The following BLAST results are available for this feature:
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