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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058293 ID=TCONS_00058293|Name=TCONS_00058293|organism=Clytia hemisphaerica|type=transcript|length=1269bpRun BLAST on NCBI transcript from alignment at scaffold_309:425323..427813- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058293 ID=TCONS_00058293|Name=TCONS_00058293|organism=Clytia hemisphaerica|type=transcript|length=2491bp|location=Sequence derived from alignment at scaffold_309:425323..427813- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00058293 vs. Swiss-Prot (Human)
Match: CBPD (Carboxypeptidase D OS=Homo sapiens GN=CPD PE=1 SV=2) HSP 1 Score: 364.385 bits (934), Expect = 3.215e-113 Identity = 185/362 (51.10%), Postives = 242/362 (66.85%), Query Frame = 1
Query: 133 EFKHHNYKNMLKYMNDIHKKCPNITRLYDLDNKTVQGRRLTVMEITENPGKYVPLKPNFKYIGNMHGNEVLGRETLLYLLDYLCTSYLAKNPETEHLLQTTRIHILPSMNPDGYEKAVEGDCSSVRGRANGHGIDLNRNFPDQFKKIRN-QQPETEAIIKWLDQYPFVLSANLHGGSLVANYPFDDDEKMKEMYAASPDDDVFVHIAKNYSYDHPTMHLGKTKC-----GDHFKDGITNGAKWYNVAGGMQDYNYLHGNAFEITVEMDCCKFPHGQHLKKQWEDHKRSLIDYIKLSHLGLKGTVKD-TSGNGITGAKIDVSYPDGKTRIPIHSRDGGDYYRLLLKGNYSVTVSVHGKTLTTQ 1197
+F HH++ +M ++ + PNITRLY L K+V+ R L VMEI++NPG + P +P FKYIGNMHGNEV+GRE LL L++YLC ++ +PE L+ TRIH++PSMNPDGYEK+ EGD SV GR N + DLNRNFPDQF +I + QPET A++ W+ YPFVLSANLHGGSLV NYPFDDDE+ Y+ SPDD VF IA +YS ++ M G+ C ++F GITNGA WYNV GGMQD+NYL N FE+T+E+ C K+P + L WE ++RSLI ++K H G++G V D T G GI A I V+ + P+ + GDY+RLL+ G Y +T S G T+
Sbjct: 500 DFHHHHFPDMEIFLRRFANEYPNITRLYSL-GKSVESRELYVMEISDNPGVHEPGEPEFKYIGNMHGNEVVGRELLLNLIEYLCKNF-GTDPEVTDLVHNTRIHLMPSMNPDGYEKSQEGDSISVIGRNNSNNFDLNRNFPDQFVQITDPTQPETIAVMSWMKSYPFVLSANLHGGSLVVNYPFDDDEQGLATYSKSPDDAVFQQIALSYSKENSQMFQGR-PCKNMYPNEYFPHGITNGASWYNVPGGMQDWNYLQTNCFEVTIELGCVKYPLEKELPNFWEQNRRSLIQFMKQVHQGVRGFVLDATDGRGILNATISVA----EINHPVTTYKTGDYWRLLVPGTYKITASARGYNPVTK 854 HSP 2 Score: 296.975 bits (759), Expect = 2.577e-89 Identity = 163/386 (42.23%), Postives = 230/386 (59.59%), Query Frame = 1
Query: 208 RLYDLDNKTVQGRRLTVMEITENPGKYVPL-------------------KPNFKYIGNMHGNEVLGRETLLYLLDYLCTSYLAKNPETEHLLQTTRIHILPSMNPDGYEKAVEGDC-------SSVRGRANGHGIDLNRNFPDQFKK----IRNQQPETEAIIKWLDQYPFVLSANLHGGSLVANYPFDD--DEKMKEMYAASPDDDVFVHIAKNYSYDHPTMHLGKTKC-GDH---FKDGITNGAKWYNVAGGMQDYNYLHGNAFEITVEMDCCKFPHGQHLKKQWEDHKRSLIDYIKLSHLGLKGTVKDT-SGNGITGAKIDVSYPDGKTRIPIHSRDGGDYYRLLLKGNYSVTVSVHG--KTLTTQVHVDGLPTKIVDFIVGP 1248
RL+ + ++V+GR L V+ +T G +P +P K +GNMHG+E + R+ L+YL L Y +P LL TT +++LPS+NPDG+E+A EGDC S GR N G DLNR+FPDQF ++ PE A+I+W+ + FVLS NLHGGS+VA+YPFDD + K +Y+ + DD+VF ++AK Y+ +HP M G+ C GD FKDGITNGA WY+V GGMQDYNY+ N FEIT+E+ CCK+P L+++WE+++ SLI I+ H+G+KG VKD+ +G+G+ A I V+ + I + GD+YRLL+ G Y++TV + G T V V P VDF + P
Sbjct: 81 RLFSI-GRSVEGRPLWVLRLTAGLGSLIPEGDAGPDAAGPDAAGPLLPGRPQVKLVGNMHGDETVSRQVLIYLARELAAGYRRGDPRLVRLLNTTDVYLLPSLNPDGFERAREGDCGFGDGGPSGASGRDNSRGRDLNRSFPDQFSTGEPPALDEVPEVRALIEWIRRNKFVLSGNLHGGSVVASYPFDDSPEHKATGIYSKTSDDEVFKYLAKAYASNHPIMKTGEPHCPGDEDETFKDGITNGAHWYDVEGGMQDYNYVWANCFEITLELSCCKYPPASQLRQEWENNRESLITLIEKVHIGVKGFVKDSITGSGLENATISVAGINHN----ITTGRFGDFYRLLVPGTYNLTVVLTGYMPLTVTNVVVKEGPATEVDFSLRP 461 HSP 3 Score: 197.593 bits (501), Expect = 1.599e-54 Identity = 122/353 (34.56%), Postives = 197/353 (55.81%), Query Frame = 1
Query: 136 FKHHNYKNMLKYMNDIHKKCPNITRLYDLDNKTVQGRRLTVMEITENPGKYVPLKPNFKYIGNMHGNEVLGRETLLYLLDYLCTSYLAKNPETEHLLQTTRIHILPSMNPDGYEKAVEGDCSSVRGRANGHGIDLNRNFPDQFKKIRNQQPETEAIIKWLDQ-YPFVLSANLHGGSLVANYPFDDDEKMKEMYAASPDDDVFVHIAKNYSYDHPTMHLGKTKC----GDHFKDGITNGAKWYNVAGGMQDYNYLHGNAFEITVEMDCCKFPHGQHLKKQWEDHKRSLIDYIKLSHLGLKGTVKDTSGNGITGAKIDVSYPDGKTRIPIHSRDGGDYYRLLLKGNYSVTVSVHG 1179
+++H+YK++ +++ + P+IT L +L T + R + +EI+ P P +P +++ +HGN +G E LL L ++LC +Y KNP L+ TRI I+PS+NPDG E+A E DC+S G+ N G DL+ +F + QPET+AII+ L Q F LS L GGS++ YP+D + E + + H+A Y+ +HP+MH+G+ C ++ G+ GA+W++ G M+DY+ +G+ EITV CC FP L W D+KRSL+ + H G+ G VKD +G I+ A I ++ I + +++GG ++ LL G +++ G
Sbjct: 931 YRYHSYKDLSEFLRGLVMNYPHITNLTNLGQST-EYRHIWSLEISNKPNVSEPEEPKIRFVAGIHGNAPVGTELLLALAEFLCLNY-KKNPAVTQLVDRTRIVIVPSLNPDGRERAQEKDCTSKIGQTNARGKDLDTDFTNN-----ASQPETKAIIENLIQKQDFSLSVALDGGSMLVTYPYDKPVQTVE------NKETLKHLASLYANNHPSMHMGQPSCPNKSDENIPGGVMRGAEWHSHLGSMKDYSVTYGHCPEITVYTSCCYFPSAARLPSLWADNKRSLLSMLVEVHKGVHGFVKDKTGKPISKAVIVLN-----EGIKVQTKEGGYFHVLLAPGVHNIIAIADG 1265 The following BLAST results are available for this feature:
BLAST of TCONS_00058293 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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