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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058259 ID=TCONS_00058259|Name=TCONS_00058259|organism=Clytia hemisphaerica|type=transcript|length=1259bp
acaTATAGAAGTAAATCTATCCTATGTTAACATTGCAATCAAGTGTCGAT
TGGAAAGCTACCATTTTTATTGGTCGTTTATTAAGTCAACTTTAGTGGAC
GGGTTTGTGTGTATGTGACTTTATAAAAAGTGTTGTTCGAAAAAAGATAA
TGTCATTGATCAAGATGAGGTCCAAAGCATTCGAATCATCTTCTGTTGGC
AAGGGGATTGTGggtaataaaaatgacaaagCATTGCTTATCAATCAACC
TATCTCTATGCGAATCAAGTACTGGTCTTTGCCAGAAGAAGATGAAACAC
CCTCCAAcgataaaaacaacaacaaacgaAACGCTGAAATCACCATCGAG
CCTCAAGAAAAAACCATTGAACAACGCCGACAAGAACGTGCCGAACGTCG
TGCCAGTAGACGGAAAGAATCTGACACACCGCCGTCAAGCGTTGAAAAGA
CGGTGACAGTTCAAACGTCCATTTCTACCACGGATAATGGAGTCGAAAAT
GTCAAGACCACGCGCACAAGCCGTTTCTCGAGAGGCTCAACGAAGGAGAG
TGAAAAAGTTGAACAGAAAACGGTGGAAGTCAAAATGGAAGCTAAACCTG
TGAAGATGGAAGCTAAAGAAATCAAAGTGGAAACAAAAGTTGAAGCAAAA
cctgaagaattgaaaaaagagGAACCTAAAAAAGTTATTGAGGAAAAAAT
TGAAGTCAAGGAGGAAAAAACTGTTGAAAGTGCGAAAGTTGAGGAACCAG
CGAAAGTTGAGGAAACGAGGAGAAGTTCGAAAGTGGAAGAAGCTCCTAAA
AATGAAGTTAAAGATAAATTATcatctttaaagaaaaatcaatttgaaag
taACAAAGGTAATTCAAGGAACAGGCCAGGCTCCATGGTAgacttcaaat
caaaatttgaaaacaaatccaATACGAACGCAGTCAACAAAAGACCCGTC
TCTATGAACATTAAATCGAAATTCGAACAAGACACAAAACCTGCTAATAA
ATTCGAACTTCGTAAAACCACATCCGTTCCTTTGAAACCATCAGCGTTGA
AAACCTCTACCAATAAAGTTGAATCCGATAAGAATGGAGTACACACAGAG
AAAACCGTCACCAAGACAGATGCAACTATCGGAGAAGGAGCCTCCAAGAA
AGAAGTCAAAGAGATCAAGTCAGTGGAAACCAAAGACACGGCTACAACCC
ATGCTGAAAAAACCACCACCATCACAGAAACCAAAACTAAAGGAGGAAGC
ACTACTGNN Run BLAST on NCBI transcript from alignment at scaffold_309:611888..616504+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058259 ID=TCONS_00058259|Name=TCONS_00058259|organism=Clytia hemisphaerica|type=transcript|length=4617bp|location=Sequence derived from alignment at scaffold_309:611888..616504+ (Clytia hemisphaerica)
acaTATAGAAGTAAATCTATCCTATGTTAACATTGCAATCAAGTGTCGAT
TGGAAAGCTACCATTTTTATTGGTCGTTTATTAAGTCAACTTTAGTGGAC
GGGTTTGTGTGTATGTGACTTTATAAAAAGTGTTGTTCGAAAAAAGATAA
TGTCATTGATCAAGATGAGGTCCAAAGCATTCGAATCATCTTCTGTTGGC
AAGGGGATTGTGggtaataaaaatgacaaagCATTGCTTATCAATCAACC
TATCTCTATGCGAATCAAGTACTGGGTAAGGTGATTCTTCTTTGGCTGAt
gttttagaccatgttcgcacgtgacagTTCCATTTCGCTCCAAAACGGAA
TGAAGCCGTGGTTCTAGTTAGAAGTGACGGAAGACTTGTATGTAACCAag
agaatggcttcatttcgtttcggagcgaaacggaaccgtcacgtgcgaat
ATGGCctcagaccatgttcagacgttacggtttcgtatcaCTCCGGCATG
GCTTCCGTTACAGATtgagagtgttcatattggtttcggaacgttttgga
gcaagaaaacggagcagttcccttccgatgaaaaaagtggaacgaaaacg
tttcgatctgttttggaTTGTAACGCCTACTTTTTtaacgtttcgaattt
tgacgttcacacttgtttcgggaccgtttcgtttcggaatgatacggaac
agtaacgtctgaacatggtttCAAGCTTGGTTCAATCAAAAACTCAATGT
CTTTCTGGGGAGTGCACTGACCGTATTGGAAGCTAATTTGAAAAGGTTTT
ACTGGGATAATCTTTCGTGATTGAAAACGGAAATCACTCCAAATTATCAC
TACTTACTTGCCTAAAAAAGATATCCTTTGTCTCTTAGGAACTTCCTGAA
AGCATTTTTGCATGTGTAAAGCTCACAATTCTTCAGTTAGAAATCTTTAT
GATTGAAAAACGGAAATCACTCCAAATTATCACTACTTACATGCCTAAAA
ACGGAAAAAtgtgttatgttttattttgattttggttaCACATCTCAAGG
CTGTTTCATTTACatgcctaaaaagatattctttgTTTCTTAGGAACTTT
CtgaaagcattttttcatgtgCAAAGCTCATAATTCTCCAGTTAGAAATC
TTAAAAACGTACTCCATATAGAAAGGAGTGTTGTAAGATGTTGTATATGA
TTTTATGATCTGCTTACACTTTAAAGCTTCAAATTCTTTCTCGGAGCTAA
AGCAGGTCTGTAAAATCTGTCTAAGAGgtgtttttgtttatcttttcttt
atgaaaaatactctacacgttttttttttataaaacgtgTACAtatcttt
taagaaaaattccACAGCCAATAGATTAAAATGTGACTTTTTATGGAAAC
AAATATGGTCGGNCAAAATCTgtgtttttgtttatcttttctttATGAAA
AATACTCTACAtatcttttaagaaaaattccACAGCCAATAGATTAAAAT
GTGACTTTTTATGGAAACAAATATGGTCgggttttcattttcttcattaT
GAACATTTGGATCAATTTTTGCCTGATATGCACCATCTTGTCCtgctttt
ttaaatttccaaagtgtcaaaaatactgcttgaaaaaacttgcttttccg
tgtgtgtgtgtgtgtataTATAATATTGATATCGCTTTTTAGGTTTATGC
AACCTTATTGTAAAGCATCCGatttcttgatatgcgtaagtcaagattac
gtcatttttcatatcagaaacacccaaaaacaccggaatttatattttta
gtaACACTCAGGTGTTTTCGGGTGtctccgataggaaaaatgacgtaatc
tcgAATTACGCATTTTAAGAATTACTAAAGCCTTCAACTAAGATTGCCAT
TAGAAATACCTGAAAAGTGGTATTTTTGGTATTGTCTAGTAAAAGTTATT
TTCNTTCTATTGCCATTAGAAATACCTGAAAAGTGGTATTTTTGGTATTG
TCTAGTAAAagttattttcttgaaaatcaaTACACGGGCAACTTTGAGGC
TTGTACCCTGAAAATTCCTATAACAAACAGTAAATCCAAAATCGGGTGCG
GGTTACTTTTATTAAAAATGGatatcatataacattacattTTGAACTAG
GCTTCTGCTTATTCTCTAGCTAAAAGAGTTtcttatataggaagtatatc
tatagatgtctgcgattcagactaacttTCAACCTACACTTGTCGGGAAA
ATTTATTAGCAGTTTCTGCTTAGCTGACAGAGTCTCCTATTTTCGTACTT
AAAATAAACCCTTTTTTTGAATAACAACTTGGATGTTTCCATGACAACCT
GTTACATTAAATCCGTTAGACAcatcaaaacattgaaagtaaaatatttc
tcctTGACACCCAAACATCAGCTTGCAAATAAAGTACTTGAGTTGAGACA
GGCACATTCAAGCACTCTCTGGAAGTACacgtcattttttataagaacaa
actatacaagaacataaggcttcggtggccaaaatgctaagaacaagtta
agaaagttaagaacatccgaaggcttcaaaaaattttgaaaaaattctta
tacaaaaaaaacgtgtacattgcATATAAGtagatgttttttataagcat
actttttttgaaaacacgcTCAGTTATGCTTAGCTTGTATTTTGGAATCG
AGCTCAAATCATGTTTTTGCTTATTtcttctgaagaaaaaaaatggttcg
tttaaaatggaaaagaaaaacgAATTTTCCCAAGCACATAACCCATGACT
TATGACCAAATGACCTCAATGAAGCTCACTGACATGCTTATgatataagt
aagtaagtctgcgaccgcagtgagaagtgacccgaaggctcctctttcga
tagctatctacctgaaggtaggggagggcgccactctttctccctggatt
tatCCACTTACCCtattgatccttctcttaattgctagCATCAAGCAGaa
ccggatgctctaccactgcaccacGGCTCGCTAATGATATActtattttt
tcaccaaatccaGGTGtcaagtatgcttataaacgtgatgcttataaaaa
gaaaaatatcattgCTCAAAATATAATCCTACGCTGAAAACTACTAAATA
ACTTCTTACTCCATAtcatatacactttttttataagaacaaattatata
agaacaaacttgaCACCCACACATCAGCTTGCAAACAAAGTACTTGTGAT
AGGTACAAatatatttataagaacaaactatacaagaacataaggcttcg
atggcaaaaaatgttaagaacaagttaagaaaaaaaattgggagagtctt
attaaaaaacgtgtactcgaACTGAAGCCGATCTCTATTACATGGATGCC
ATACTtctctccataactcgaataaaTTGACGTTTCGTGTTCGTGTTATG
GAGAAGTCATAGTCTAACCCATTCGCTATCTAATATCAGACTATTAATTC
ATCCTCTGGATTCTTTGTTGAGATTTTTGGCAGTGCATCCTTTTATTACC
TCCGTTTTATCAGATGACCTATGATTTCGAAGTCCAAATTAGTTCAAATT
AATAATAGTGGTTTTCTTTTTCACTTGTTTCAGTCTTTGCCAGAAGAAGA
TGAAACACCCTCCAAcgataaaaacaacaacaaacgaAACGCTGAAATCA
CCATCGAGCCTCAAGAAAAAACCATTGAACAACGCCGACAAGAACGTGCC
GAACGTCGTGCCAGTAGACGGAAAGAATCTGACACACCGCCGTCAAGCGT
TGAAAAGACGGTGACAGTTCAAACGTCCATTTCTACCACGGATAATGGAG
TCGAAAATGTCAAGACCACGCGCACAAGCCGTTTCTCGAGAGGCTCAACG
AAGGAGAGTGAAAAAGTTGAACAGAAAACGGTGGAAGTCAAAATGGAAGC
TAAACCTGTGAAGATGGAAGCTAAAGAAATCAAAGTGGAAACAAAAGTTG
AAGCAAAAcctgaagaattgaaaaaagagGAACCTAAAAAAGTTATTGAG
GAAAAAATTGAAGTCAAGGAGGAAAAAACTGTTGAAAGTGCGAAAGTTGA
GGAACCAGCGAAAGTTGAGGAAACGAGGAGAAGTTCGAAAGTGGAAGAAG
CTCCTAAAAATGAAGTTAAAGATAAATTATcatctttaaagaaaaatcaa
tttgaaagtaACAAAGGTAATTCAAGGAACAGGCCAGGCTCCATGGTAga
cttcaaatcaaaatttgaaaacaaatccaATACGAACGCAGTCAACAAAA
GACCCGTCTCTATGAACATTAAATCGAAATTCGAACAAGACACAAAACCT
GCTAATAAATTCGAACTTCGTAAAACCACATCCGTTCCTTTGAAACCATC
AGCGTTGAAAACCTCTACCAATAAAGTTGAATCCGATAAGAATGGAGTAC
ACACAGAGAAAACCGTCACCAAGACAGATGCAACTATCGGAGAAGGAGCC
TCCAAGAAAGAAGTCAAAGAGATCAAGTCAGTGGAAACCAAAGACACGGC
TACAACCCATGCTGAAAAAACCACCACCATCACAGAAACCAAAACTAAAG
GAGGAAGCACTACTGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058259-exon-scaffold_309-1491911889:611888..612162 | TCONS_00058259-exon-scaffold_309-1491911889:611888..612162 | Clytia hemisphaerica | exon |
| TCONS_00058259-exon-scaffold_309-1510915933:611888..612162 | TCONS_00058259-exon-scaffold_309-1510915933:611888..612162 | Clytia hemisphaerica | exon |
| TCONS_00058259-exon-scaffold_309-1575043694:611888..612162 | TCONS_00058259-exon-scaffold_309-1575043694:611888..612162 | Clytia hemisphaerica | exon |
| TCONS_00058259-exon-scaffold_309-1491911889:615521..616504 | TCONS_00058259-exon-scaffold_309-1491911889:615521..616504 | Clytia hemisphaerica | exon |
| TCONS_00058259-exon-scaffold_309-1510915933:615521..616504 | TCONS_00058259-exon-scaffold_309-1510915933:615521..616504 | Clytia hemisphaerica | exon |
| TCONS_00058259-exon-scaffold_309-1575043694:615521..616504 | TCONS_00058259-exon-scaffold_309-1575043694:615521..616504 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_309 | supercontig | scaffold_309:611888..616504 + |
Blast
The following BLAST results are available for this feature:
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