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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058361 ID=TCONS_00058361|Name=TCONS_00058361|organism=Clytia hemisphaerica|type=transcript|length=1082bp
GTGAAGTACAAAACTGCAAGCAAAAACGTGAAGTTTATTCGTCAAGACCC
TGTTCGACTTCATATTTTCAAGTTTGTTTTCATCCAACTTTCGCTTCAAC
TGAATGTCAGCCAATCCCAATCAAATTTCTAACTTGGATATATTTTAAAT
TAAATGCAAAACAAAATGAGTCACCAACTGGAcctgcaacaacaacaacc
aacgCAAGCTACTGTGAGACCTGTACCACCTCCTCAACTACCACCCTCTA
TACAACTTCGCCCTCAAAATGCTGCATATGGACATTCTCCAACAGCATTT
ACAGAACAAACCACACTCCCTTGTCAGATTCACCACCAACCCAGACACCA
AAACATGAATAATGTCCTGAAGCCTGGAGAAAGTTTCTTCAACATTGACC
CACCTGAATTTCGACAAAAAACCAACCACAACACAACGATCACCGAAAAA
ATTCTGCCAGATTCTCAACCACAACAACCATCACAATCCTCGAACACCAA
AATTGACCAACAACCACCCACCAAAAATCCATTCCCATGTGACTTCTGCG
AAAGAAGCTTCACCACAAAAAGTGGTAGAACTATCCATATGAAAAAGTGT
AGGACAACACGTCCAACTTTCGCCACCACAGAAACCCTAGACCAATCAAC
CATTCCCAACCAGCCACCTGATACCTCTAACCAACCACCAACTTTTCACC
CAGATCCAAGTTCCAACCAAACAGCAACCGTCACCAAAAACCCTCAGGAA
AATGCTGAACACCAACCACAAATCGTCCCTCCTCCCCAACAACCAACAAG
TGAGCGTATCCCACAGAATTCAATATGGGGGAATCACCCATACGAGGACT
TGTCACAGATAATGATCTCGTGCTATGAGGAAATTGTTTTCTTCCGAAAG
AACCTTTTCTTATTACCCTCAGGGAAGGCTGGAAAGGATTACATCACTGA
AATGAATAGACCTGTAAATTATTGGAACCAGAACTCTGCTAATCTTTCAA
ACATTGCTTTAAAAATGCTCATGTGTATGCCAGCCCTCCTTCTCCAAAAG
CCGCACCAACGCTCCAAAAGCAAAGAACACAC Run BLAST on NCBI protein sequence of TCONS_00058361-protein >TCONS_00058361-protein ID=TCONS_00058361-protein|Name=TCONS_00058361-protein|organism=Clytia hemisphaerica|type=polypeptide|length=309bp
MQNKMSHQLDLQQQQPTQATVRPVPPPQLPPSIQLRPQNAAYGHSPTAFT
EQTTLPCQIHHQPRHQNMNNVLKPGESFFNIDPPEFRQKTNHNTTITEKI
LPDSQPQQPSQSSNTKIDQQPPTKNPFPCDFCERSFTTKSGRTIHMKKCR
TTRPTFATTETLDQSTIPNQPPDTSNQPPTFHPDPSSNQTATVTKNPQEN
AEHQPQIVPPPQQPTSERIPQNSIWGNHPYEDLSQIMISCYEEIVFFRKN
LFLLPSGKAGKDYITEMNRPVNYWNQNSANLSNIALKMLMCMPALLLQKP
HQRSKSKEH Run BLAST on NCBI transcript from alignment at scaffold_309:1004428..1005509 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058361 ID=TCONS_00058361|Name=TCONS_00058361|organism=Clytia hemisphaerica|type=transcript|length=1082bp|location=Sequence derived from alignment at scaffold_309:1004428..1005509 (Clytia hemisphaerica)
GTGTGTTCTTTGCTTTTGGAGCGTTGGTGCGGCTTTTGGAGAAGGAGGGC
TGGCATACACATGAGCATTTTTAAAGCAATGTTTGAAAGATTAGCAGAGT
TCTGGTTCCAATAATTTACAGGTCTATTCATTTCAGTGATGTAATCCTTT
CCAGCCTTCCCTGAGGGTAATAAGAAAAGGTTCTTTCGGAAGAAAACAAT
TTCCTCATAGCACGAGATCATTATCTGTGACAAGTCCTCGTATGGGTGAT
TCCCCCATATTGAATTCTGTGGGATACGCTCACTTGTTGGTTGTTGGGGA
GGAGGGACGATTTGTGGTTGGTGTTCAGCATTTTCCTGAGGGTTTTTGGT
GACGGTTGCTGTTTGGTTGGAACTTGGATCTGGGTGAAAAGTTGGTGGTT
GGTTAGAGGTATCAGGTGGCTGGTTGGGAATGGTTGATTGGTCTAGGGTT
TCTGTGGTGGCGAAAGTTGGACGTGTTGTCCTACACTTTTTCATATGGAT
AGTTCTACCACTTTTTGTGGTGAAGCTTCTTTCGCAGAAGTCACATGGGA
ATGGATTTTTGGTGGGTGGTTGTTGGTCAATTTTGGTGTTCGAGGATTGT
GATGGTTGTTGTGGTTGAGAATCTGGCAGAATTTTTTCGGTGATCGTTGT
GTTGTGGTTGGTTTTTTGTCGAAATTCAGGTGGGTCAATGTTGAAGAAAC
TTTCTCCAGGCTTCAGGACATTATTCATGTTTTGGTGTCTGGGTTGGTGG
TGAATCTGACAAGGGAGTGTGGTTTGTTCTGTAAATGCTGTTGGAGAATG
TCCATATGCAGCATTTTGAGGGCGAAGTTGTATAGAGGGTGGTAGTTGAG
GAGGTGGTACAGGTCTCACAGTAGCTTGcgttggttgttgttgttgcagg
TCCAGTTGGTGACTCATTTTGTTTTGCATTTAATTTAAAATATATCCAAG
TTAGAAATTTGATTGGGATTGGCTGACATTCAGTTGAAGCGAAAGTTGGA
TGAAAACAAACTTGAAAATATGAAGTCGAACAGGGTCTTGACGAATAAAC
TTCACGTTTTTGCTTGCAGTTTTGTACTTCAC Coding sequence (CDS) from alignment at scaffold_309:1004428..1005509 >TCONS_00058361 ID=TCONS_00058361|Name=TCONS_00058361|organism=Clytia hemisphaerica|type=CDS|length=927bp|location=Sequence derived from alignment at scaffold_309:1004428..1005509 (Clytia hemisphaerica)
GTGTTCTTTGCTTTTGGAGCGTTGGTGCGGCTTTTGGAGAAGGAGGGCTG
GCATACACATGAGCATTTTTAAAGCAATGTTTGAAAGATTAGCAGAGTTC
TGGTTCCAATAATTTACAGGTCTATTCATTTCAGTGATGTAATCCTTTCC
AGCCTTCCCTGAGGGTAATAAGAAAAGGTTCTTTCGGAAGAAAACAATTT
CCTCATAGCACGAGATCATTATCTGTGACAAGTCCTCGTATGGGTGATTC
CCCCATATTGAATTCTGTGGGATACGCTCACTTGTTGGTTGTTGGGGAGG
AGGGACGATTTGTGGTTGGTGTTCAGCATTTTCCTGAGGGTTTTTGGTGA
CGGTTGCTGTTTGGTTGGAACTTGGATCTGGGTGAAAAGTTGGTGGTTGG
TTAGAGGTATCAGGTGGCTGGTTGGGAATGGTTGATTGGTCTAGGGTTTC
TGTGGTGGCGAAAGTTGGACGTGTTGTCCTACACTTTTTCATATGGATAG
TTCTACCACTTTTTGTGGTGAAGCTTCTTTCGCAGAAGTCACATGGGAAT
GGATTTTTGGTGGGTGGTTGTTGGTCAATTTTGGTGTTCGAGGATTGTGA
TGGTTGTTGTGGTTGAGAATCTGGCAGAATTTTTTCGGTGATCGTTGTGT
TGTGGTTGGTTTTTTGTCGAAATTCAGGTGGGTCAATGTTGAAGAAACTT
TCTCCAGGCTTCAGGACATTATTCATGTTTTGGTGTCTGGGTTGGTGGTG
AATCTGACAAGGGAGTGTGGTTTGTTCTGTAAATGCTGTTGGAGAATGTC
CATATGCAGCATTTTGAGGGCGAAGTTGTATAGAGGGTGGTAGTTGAGGA
GGTGGTACAGGTCTCACAGTAGCTTGcgttggttgttgttgttgcaggTC
CAGTTGGTGACTCATTTTGTTTTGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058361-exon-scaffold_309-1491911889:1004428..1005509 | TCONS_00058361-exon-scaffold_309-1491911889:1004428..1005509 | Clytia hemisphaerica | exon |
| TCONS_00058361-exon-scaffold_309-1510915933:1004428..1005509 | TCONS_00058361-exon-scaffold_309-1510915933:1004428..1005509 | Clytia hemisphaerica | exon |
| TCONS_00058361-exon-scaffold_309-1575043694:1004428..1005509 | TCONS_00058361-exon-scaffold_309-1575043694:1004428..1005509 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_309 | supercontig | scaffold_309:1004428..1005509 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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