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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058389 ID=TCONS_00058389|Name=TCONS_00058389|organism=Clytia hemisphaerica|type=transcript|length=873bp
aaacaagcaaGACATTTCATGAgttcaaaactttctttaatATTGCAGTG
GTTCCTATGACTGCCGATTTTTGCATACAAGTTTGGATGTAGCTGATGTC
CAAATAACTCAAATATTTCTCTAGATTGTTTGACACTACACCCAAAGCTC
CAACAACAAGAGGTATCACTTTCACAGTCACATGGTTCATCTTCCTGATT
TCGTACGCAAGTGGGGTATATTTCTCAATcttttcttgttcttttttatC
TACATTGGCATCATTCGGAACGGAGAAATCAACAATTGTccaatgtttct
tttctttatcaaTAAATACAAGGTCAGGTCTGTTTGCTTCAAGTTCCTTT
GGCGTCTCTACTTTCCTATCCCACCAAACCTCAAACTTTCCACAACTGCT
GACTCTCACACTGTCAGGAGTTTCCTGGTACCACTTTTCACTACATTTTA
TCCCGTGGTTCTTACAAACTTCCCAGTAGACCCTAAGCCCCATACGATCA
TGTCTTTTCCTATATGCAGAACCAGCTAGTTTCGAACACCCACTAACAAC
ATGTGACACCTTCTCTGGAAACTCCTTACATTTCCTACACAACCGATCTA
CTTCACCTCCTGTGATTCGACTTTTCAACCAGTTCGTTTGTAACGCCTGC
TCCTGAGCTGAAAATATGTACCCCTCAGTTCGTTTATCCAAATAACCTTT
CTTGAGCCAATCGAATGTTCGTTGGCTTACATTTTCCCCTACATTGCGAA
ACCATTCACCATGCATGGGCTTCATAAATACCTCGCTagctttttcttca
atttcctgCTCTTTAAACTCTTTCCCTGTTTCCAACCGAGTTTGTTCGAT
ACCATCCCAATAAACTTCTTGTG Run BLAST on NCBI protein sequence of TCONS_00058389-protein >TCONS_00058389-protein ID=TCONS_00058389-protein|Name=TCONS_00058389-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp
QEVYWDGIEQTRLETGKEFKEQEIEEKASEVFMKPMHGEWFRNVGENVSQ
RTFDWLKKGYLDKRTEGYIFSAQEQALQTNWLKSRITGGEVDRLCRKCKE
FPEKVSHVVSGCSKLAGSAYRKRHDRMGLRVYWEVCKNHGIKCSEKWYQE
TPDSVRVSSCGKFEVWWDRKVETPKELEANRPDLVFIDKEKKHWTIVDFS
VPNDANVDKKEQEKIEKYTPLAYEIRKMNHVTVKVIPLVVGALGVVSNNL
EKYLSYLDISYIQTCMQKSAVIGTTAILKKVLNS Run BLAST on NCBI transcript from alignment at scaffold_31:51172..52044 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058389 ID=TCONS_00058389|Name=TCONS_00058389|organism=Clytia hemisphaerica|type=transcript|length=873bp|location=Sequence derived from alignment at scaffold_31:51172..52044 (Clytia hemisphaerica)
CACAAGAAGTTTATTGGGATGGTATCGAACAAACTCGGTTGGAAACAGGG
AAAGAGTTTAAAGAGcaggaaattgaagaaaaagctAGCGAGGTATTTAT
GAAGCCCATGCATGGTGAATGGTTTCGCAATGTAGGGGAAAATGTAAGCC
AACGAACATTCGATTGGCTCAAGAAAGGTTATTTGGATAAACGAACTGAG
GGGTACATATTTTCAGCTCAGGAGCAGGCGTTACAAACGAACTGGTTGAA
AAGTCGAATCACAGGAGGTGAAGTAGATCGGTTGTGTAGGAAATGTAAGG
AGTTTCCAGAGAAGGTGTCACATGTTGTTAGTGGGTGTTCGAAACTAGCT
GGTTCTGCATATAGGAAAAGACATGATCGTATGGGGCTTAGGGTCTACTG
GGAAGTTTGTAAGAACCACGGGATAAAATGTAGTGAAAAGTGGTACCAGG
AAACTCCTGACAGTGTGAGAGTCAGCAGTTGTGGAAAGTTTGAGGTTTGG
TGGGATAGGAAAGTAGAGACGCCAAAGGAACTTGAAGCAAACAGACCTGA
CCTTGTATTTAttgataaagaaaagaaacattggACAATTGTTGATTTCT
CCGTTCCGAATGATGCCAATGTAGataaaaaagaacaagaaaagATTGAG
AAATATACCCCACTTGCGTACGAAATCAGGAAGATGAACCATGTGACTGT
GAAAGTGATACCTCTTGTTGTTGGAGCTTTGGGTGTAGTGTCAAACAATC
TAGAGAAATATTTGAGTTATTTGGACATCAGCTACATCCAAACTTGTATG
CAAAAATCGGCAGTCATAGGAACCACTGCAATattaaagaaagttttgaa
cTCATGAAATGTCttgcttgttt Coding sequence (CDS) from alignment at scaffold_31:51172..52044 >TCONS_00058389 ID=TCONS_00058389|Name=TCONS_00058389|organism=Clytia hemisphaerica|type=CDS|length=855bp|location=Sequence derived from alignment at scaffold_31:51172..52044 (Clytia hemisphaerica)
CAAGAAGTTTATTGGGATGGTATCGAACAAACTCGGTTGGAAACAGGGAA
AGAGTTTAAAGAGcaggaaattgaagaaaaagctAGCGAGGTATTTATGA
AGCCCATGCATGGTGAATGGTTTCGCAATGTAGGGGAAAATGTAAGCCAA
CGAACATTCGATTGGCTCAAGAAAGGTTATTTGGATAAACGAACTGAGGG
GTACATATTTTCAGCTCAGGAGCAGGCGTTACAAACGAACTGGTTGAAAA
GTCGAATCACAGGAGGTGAAGTAGATCGGTTGTGTAGGAAATGTAAGGAG
TTTCCAGAGAAGGTGTCACATGTTGTTAGTGGGTGTTCGAAACTAGCTGG
TTCTGCATATAGGAAAAGACATGATCGTATGGGGCTTAGGGTCTACTGGG
AAGTTTGTAAGAACCACGGGATAAAATGTAGTGAAAAGTGGTACCAGGAA
ACTCCTGACAGTGTGAGAGTCAGCAGTTGTGGAAAGTTTGAGGTTTGGTG
GGATAGGAAAGTAGAGACGCCAAAGGAACTTGAAGCAAACAGACCTGACC
TTGTATTTAttgataaagaaaagaaacattggACAATTGTTGATTTCTCC
GTTCCGAATGATGCCAATGTAGataaaaaagaacaagaaaagATTGAGAA
ATATACCCCACTTGCGTACGAAATCAGGAAGATGAACCATGTGACTGTGA
AAGTGATACCTCTTGTTGTTGGAGCTTTGGGTGTAGTGTCAAACAATCTA
GAGAAATATTTGAGTTATTTGGACATCAGCTACATCCAAACTTGTATGCA
AAAATCGGCAGTCATAGGAACCACTGCAATattaaagaaagttttgaacT
CATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058389-exon-scaffold_31-1491911889:51172..52044 | TCONS_00058389-exon-scaffold_31-1491911889:51172..52044 | Clytia hemisphaerica | exon |
| TCONS_00058389-exon-scaffold_31-1510915933:51172..52044 | TCONS_00058389-exon-scaffold_31-1510915933:51172..52044 | Clytia hemisphaerica | exon |
| TCONS_00058389-exon-scaffold_31-1575043694:51172..52044 | TCONS_00058389-exon-scaffold_31-1575043694:51172..52044 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_31 | supercontig | scaffold_31:51172..52044 . |
Blast
The following BLAST results are available for this feature:
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