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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058432 ID=TCONS_00058432|Name=TCONS_00058432|organism=Clytia hemisphaerica|type=transcript|length=1047bp
GCAAAATAATATACGTCTATGTGCAATAGTGTTAATACTTTGTATCGGAA
AATTCTGCATTATGCAAAACTTGATTCTGTAGAGAATagcattattttga
ttttattgatggGACTTTAAGTAGAAGTcacattcaaaattttctgtGTA
GGAGGAAAGAATTGTACATTATTAGaatcacaaaaataaattaaaaaact
tcGAGCGAAATATCAAGCAAtaattttcgaagatttttaaAGATTCTTCT
ACTTGAAACTGGTGGAGCAGAAACTATTTTAACTGAAGTTTCTGGATTCG
CTTATGAAGCAATCGTTTCAGGATCCAGTTGGAATTATAGAGCAGAAAAG
CACGATAATATGATATTCTGATCAACTATCGAGTTTGGTGCGAAAGACAA
GATGCCAACTGGATTCTCACTCATCatttaaattttccaaaaccAAAACT
ATTAAGAATGGAATGGAAATTGTTATATGGCATCATTGCTGTATGTGTCT
TGCCTATGATGGGTGCACTGTGGAAAGTCGATcgagaaattaaagaaaat
ctCAAGCATTTCACCATCAATGAACATTCTGTTCTGCTCAACCAAGTGTT
GGGATTGACTTGGAGATTGTATTTCATTTCTTTGGTGATATCATTGATGG
GGTTTGGTTACCATATTTTCACActgaagaaattcaaaacagtgAGGTTA
TTGACACACGTACTTCACATTCTCAGTGgtttcacTTCTATGTATGGCAG
CTATCAAATCCTACATTTATTCAAGATAGACAAGAGCTATATTCCTGACT
CTCGTACTCTTTCACTAGCCTATATATCGTCGATTATTAGCCTCTTGATT
GGAGGCTATGGAGTATGTCAATCGAGGGAAGAAAGGAAAATTGATATCGA
GACAGCAGATATTGTAAATAGGAACAACTGAAGAAAATTATATTTGCAGA
AGTGACAAAAAtctatttcactttttgaatttttcgagagcttcaacaaa
attttcaccaaatgGATTTTAAATTCTAACTTAAAAGTGATACCAGA Run BLAST on NCBI protein sequence of TCONS_00058432-protein >TCONS_00058432-protein ID=TCONS_00058432-protein|Name=TCONS_00058432-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MEWKLLYGIIAVCVLPMMGALWKVDREIKENLKHFTINEHSVLLNQVLGL
TWRLYFISLVISLMGFGYHIFTLKKFKTVRLLTHVLHILSGFTSMYGSYQ
ILHLFKIDKSYIPDSRTLSLAYISSIISLLIGGYGVCQSREERKIDIETA
DIVNRNN Run BLAST on NCBI transcript from alignment at scaffold_311:227267..230890+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058432 ID=TCONS_00058432|Name=TCONS_00058432|organism=Clytia hemisphaerica|type=transcript|length=3624bp|location=Sequence derived from alignment at scaffold_311:227267..230890+ (Clytia hemisphaerica)
GCAAAATAATATACGTCTATGTGCAATAGTGTTAATACTTTGTATCGGAA
AATTCTGCATTATGCAAAACTTGATTCTGTAGAGAATagcattattttga
ttttattgatggGACTTTAAGTAGAAGTcacattcaaaattttctgtGTA
GGAGGAAAGAATTGTACATTATTAGaatcacaaaaataaattaaaaaact
tcGAGCGAAATATCAAGCAAtaattttcgaagatttttaaAGATTCTTCT
ACTTGAAACTGGTGGAGCAGAAACTATTTTAACTGAAGTTTCTGGATTCG
CTTATGAAGCAATCGTTTCAGGATCCAGTTGGAATTATAGAGCAGAAAAG
CACGATAATATGATATTCTGATCAACTATCGAGTTTGGTGCGAAAGACAA
GATGCCAACTGGATTCTCACTCATCatttaaattttccaaaaccAAAACT
ATTAAGAATGGAATGGAAATTGTTATATGGCATCATTGCTGTATGTGTCT
TGCCTATGATGGGTGCACTGTGGAAAGTCGATcgagaaattaaagaaaat
ctCAAGCATTTCACCATCAATGAACATTCTGTTCTGCTCAACCAAGGTAA
GCATGGTTGTTAAACACTTCATCacatacagtatgtggcccccaaaacgt
cgatcgagactaaaatttctctcaaatctagaggaaaagtggttttaaat
tttttttttgctgcatgcaaaactttaacatctctacttcaTTTCCcaaa
agttctttttcaaaattttcaatttcaacaatttttttcaatcgcttaaa
gatagatagcttttttctaatggccatTCTGTTCTGCTCAACCAAGGTGA
GTGTGGTTATTAAAGGGATATTCAGacggtttgagatatttggatTACAA
AAGCCTTCTGTGGTCCTTAGTAAagcctcaaagtatttttgtgtaataat
gttccaaaatcgagatataaaaatttgaaacttttgaaaatgggttctta
tTAGTACACGGTTCTTAGGTTGAAATTCTATAATTTTCATtctaaaaagc
caaaaaattgtaacttgaatatctcgactttggatagtagttaggcaaaa
atattttgagattttgctcagGAGAATAGACGGATCCCTCaccatgccaa
atattacaaaccatctgattaccCCTTTTAACACTATTTTATCATAACAT
CAAGACTAAACATCGTGACCTAAACATGACACGCTAGAAAAGTCGTCGAT
GCTTTCACCAACCGGCAATTCAACTGACCCTGAGCTTATTCAAAAGTTAA
ATTTGAAGGGTCGATTGACATTTTCTCGGTTAAATTCCCACTGATAATAA
TAAATTATAGTTTGTTAAATAGTTAAAGAAAATTGAtcttcattttcgat
ttttttcgaaGAAACCTATTCGTCCATTCAATGTTCTCTTTCTAACGCAG
ATTTACTTttaattcatcttttttgtcaCAAAAGTTTCAAATTGTACAGA
TTGCCTTTTTTGTAACAGACTTTAATTAATATGTAATAAAGGcaacaatt
tcacaaaaattacgaaaaaatgattcaaaaaacatttttctttcaagtgG
ACCGGAAAAATGGGGAATGGAAATTGTTTGTAGCCGGGTCCTTTATGGTT
CCTCCCCATCCATGATTctagacacccctgtgtcacagcccCTGGTGAAA
CTTTTCCCCACAGTGGTgatgataaaattttcaaatgaagaCCCAATGGg
aataaaaaagtcaaaaaatccggtgggatggttttggagtacaattttct
ACATTGAGTTTTAAATAGGGATTGAATCAAAGTCGATTCCCCAGTGAGGA
TATTATAGGGTATTCTTCCCACCGGGGATGAGATTTTTGGCTGAATTTTC
CAGCGGGGCTGGGATCCCAGagggtctgtgatacaggggtaaTTATAGGG
TTGATAATCCATCTACATGGTCTATTTTTCAGTGTTGGGATTGACTTGGA
GATTGTATTTCATTTCTTTGGTGATATCATTGATGGGGTTTGGTTACCAT
ATTTTCACActgaagaaattcaaaacagtgAGGTTATTGACACACGTACT
TCACATTCTCAGTGGTAAGGATTTCTTACAGGTATTCTTCTCTATGAATG
Atgtttcggatgttcttaactttttgagatttatgcttaaaaatgttctt
aacatgttctattttgacctttttgtgaatatttttgaccattttcctaa
gaaatagggtgttttgagtctacaaagctttaaaatgtttttaacttgtt
cttaacattttggatagcaaagccttatgttcttatatagtttattctta
tataaaaaaacgtgtatggaaAGAAGGTGCGCGTCTACGCTGACAAATCA
GAGTAACCAGTATAATTTCTCCGTGAAGCAatttggatttaacacaggtt
aaatcacagtttaacttttatttgataagtGCCACATACAGTACTCGAAT
GGCTGGGTGGCCGCCCTCCgccaactgagtctactttgctaatagCCACG
TGACGTCATGTTCTTAATGGCCGTCGCATCTCCCTGTTCAAGTCGAcgct
ctaactgaaagctgacaggatgaaatatttttacctccctccctccctgc
agttatgcttgtaggcgatcctcacttatttatactaatattgtagttat
tgggacaaattttccccaaaacttattattcgaggattagccataatttc
atgccaaacttatatctaacgactcacacttacttctaAGCCGTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTTTTCCCCAAAACTTActattcgaggatta
gccataaatttatgccaaacttatatctaccgactcacacttacttctca
GCCGTCCGACTACTTGATTGGTTCTACCCCTAATCTAGGCCATAGACAAT
GGAAAGTTAAAGCAAGAAATTAGCGAAGCCTTCAGATTTCCGCTGCTTTA
GGAATAACAAATTGTAAGATTTAATCTGCCATCCATATCTATCCTGTTTA
AGCACGAATCATCAGGAATTAACACTGCATTTCCATcaacatttgttttt
tttaggtttcacTTCTATGTATGGCAGCTATCAAATCCTACATTTATTCA
AGATAGACAAGAGCTATATTCCTGACTCTCGTACTCTTTCACTAGCCTAT
ATATCGTCGATTATTAGCCTCTTGATTGGAGGCTATGGAGTATGTCAATC
GAGGGAAGAAAGGAAAATTGATATCGAGACAGCAGATATTGTAAATAGGA
ACAACTGAAGAAAATTATATTTGCAGAAGTGACAAAAAtctatttcactt
tttgaatttttcgagagcttcaacaaaattttcaccaaatgGATTTTAAA
TTCTAACTTAAAAGTGATACCAGA Coding sequence (CDS) from alignment at scaffold_311:227267..230890+ >TCONS_00058432 ID=TCONS_00058432|Name=TCONS_00058432|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at scaffold_311:227267..230890+ (Clytia hemisphaerica)
ATGGAATGGAAATTGTTATATGGCATCATTGCTGTATGTGTCTTGCCTAT
GATGGGTGCACTGTGGAAAGTCGATcgagaaattaaagaaaatctCAAGC
ATTTCACCATCAATGAACATTCTGTTCTGCTCAACCAAGTGTTGGGATTG
ACTTGGAGATTGTATTTCATTTCTTTGGTGATATCATTGATGGGGTTTGG
TTACCATATTTTCACActgaagaaattcaaaacagtgAGGTTATTGACAC
ACGTACTTCACATTCTCAGTGgtttcacTTCTATGTATGGCAGCTATCAA
ATCCTACATTTATTCAAGATAGACAAGAGCTATATTCCTGACTCTCGTAC
TCTTTCACTAGCCTATATATCGTCGATTATTAGCCTCTTGATTGGAGGCT
ATGGAGTATGTCAATCGAGGGAAGAAAGGAAAATTGATATCGAGACAGCA
GATATTGTAAATAGGAACAACTGAATGGAATGGAAATTGTTATATGGCAT
CATTGCTGTATGTGTCTTGCCTATGATGGGTGCACTGTGGAAAGTCGATc
gagaaattaaagaaaatctCAAGCATTTCACCATCAATGAACATTCTGTT
CTGCTCAACCAAGTGTTGGGATTGACTTGGAGATTGTATTTCATTTCTTT
GGTGATATCATTGATGGGGTTTGGTTACCATATTTTCACActgaagaaat
tcaaaacagtgAGGTTATTGACACACGTACTTCACATTCTCAGTGgtttc
acTTCTATGTATGGCAGCTATCAAATCCTACATTTATTCAAGATAGACAA
GAGCTATATTCCTGACTCTCGTACTCTTTCACTAGCCTATATATCGTCGA
TTATTAGCCTCTTGATTGGAGGCTATGGAGTATGTCAATCGAGGGAAGAA
AGGAAAATTGATATCGAGACAGCAGATATTGTAAATAGGAACAACTGAAT
GGAATGGAAATTGTTATATGGCATCATTGCTGTATGTGTCTTGCCTATGA
TGGGTGCACTGTGGAAAGTCGATcgagaaattaaagaaaatctCAAGCAT
TTCACCATCAATGAACATTCTGTTCTGCTCAACCAAGTGTTGGGATTGAC
TTGGAGATTGTATTTCATTTCTTTGGTGATATCATTGATGGGGTTTGGTT
ACCATATTTTCACActgaagaaattcaaaacagtgAGGTTATTGACACAC
GTACTTCACATTCTCAGTGgtttcacTTCTATGTATGGCAGCTATCAAAT
CCTACATTTATTCAAGATAGACAAGAGCTATATTCCTGACTCTCGTACTC
TTTCACTAGCCTATATATCGTCGATTATTAGCCTCTTGATTGGAGGCTAT
GGAGTATGTCAATCGAGGGAAGAAAGGAAAATTGATATCGAGACAGCAGA
TATTGTAAATAGGAACAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058432-exon-scaffold_311-1491911889:227267..227862 | TCONS_00058432-exon-scaffold_311-1491911889:227267..227862 | Clytia hemisphaerica | exon |
| TCONS_00058432-exon-scaffold_311-1510915933:227267..227862 | TCONS_00058432-exon-scaffold_311-1510915933:227267..227862 | Clytia hemisphaerica | exon |
| TCONS_00058432-exon-scaffold_311-1575043694:227267..227862 | TCONS_00058432-exon-scaffold_311-1575043694:227267..227862 | Clytia hemisphaerica | exon |
| TCONS_00058432-exon-scaffold_311-1491911889:229249..229380 | TCONS_00058432-exon-scaffold_311-1491911889:229249..229380 | Clytia hemisphaerica | exon |
| TCONS_00058432-exon-scaffold_311-1510915933:229249..229380 | TCONS_00058432-exon-scaffold_311-1510915933:229249..229380 | Clytia hemisphaerica | exon |
| TCONS_00058432-exon-scaffold_311-1575043694:229249..229380 | TCONS_00058432-exon-scaffold_311-1575043694:229249..229380 | Clytia hemisphaerica | exon |
| TCONS_00058432-exon-scaffold_311-1491911889:230572..230890 | TCONS_00058432-exon-scaffold_311-1491911889:230572..230890 | Clytia hemisphaerica | exon |
| TCONS_00058432-exon-scaffold_311-1510915933:230572..230890 | TCONS_00058432-exon-scaffold_311-1510915933:230572..230890 | Clytia hemisphaerica | exon |
| TCONS_00058432-exon-scaffold_311-1575043694:230572..230890 | TCONS_00058432-exon-scaffold_311-1575043694:230572..230890 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:227267..230890 + |
Blast
The following BLAST results are available for this feature:
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