TCONS_00058442 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058442
Unique NameTCONS_00058442
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3092

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058442 ID=TCONS_00058442|Name=TCONS_00058442|organism=Clytia hemisphaerica|type=transcript|length=3092bp
CTCTGAAACTTGGCAATACACGGGTTGTAAGATATTATAgcagtgcagtc
aaaacatgcgattactcgaaaaattccacgtgattttattcccatgttac
ttggtATATAACTcatatttaattattttattcGTTTTAATGAATTCGag
ccaatcagaaataaatgtcatgtaacaagcacataaacttttcgagtaaa
agcgtgatttgacgtcaaactttatttttgcaacctgtgtattgagTCTG
ATTTTCACTGgtttaaaaaagatatttgaaatAATGTTTTGTCAGTTTTG
AAAGAAAGCCATATCTCATATTAGCCCGGGGGCaacttatagctttttga
tagactggatggcgctgataagtacTTCACTGGGCTCCAGCAGCATCAAA
ACCATCGTTCAGTCAGAAGTGGACTCTAGTCTACcgtataattttttgaa
aaaacgcgATGGACTTGATGATGAAAACAATCAGATTTGAtctttagaat
aaaaaaaaaatatcaaaaatatcaaatttaaccCCCGAGAATTGAACACT
GTGGAGGGAACTTAGTAAAATATTACCACATACcaaaaaaaaatgattca
aGTTTGATAATGTGAAGTGGTGTGCTGTTGTTGGGTACAGAAATGATTGT
GGAGAGATTCAATCTCATCGAAACTTAAGCCACAGAAACTACATTTGTAC
ATTTTCTCTCGACGGGCAATACAATTATGTAGTTCTAAATCAGTTGGATG
ATTAAAAGATGCTCCACACGGGTAACATTTATAAGACTTTTGTTGACGGT
ATGAACAATCATGCATTTGCATATCGACAAGCTGGTTAAAAGTCATCCCG
CACGCTCCACACCTGTGAGACCGTTCTCTGTAACTACAATGATGCGTTTG
CAGCTCTGACGCTAGATTGAATGTCATTCCGCAGGCGCTACAATGATACG
AAGGTGTATCACGTCGAAATTCGCAGGTATGGTTTCGAAACTCGGTCGGG
TGGGTGAACGTCAATCCACAGCTGTTACAAGGTAATAGTAATCGTTCGCT
ATTAGCGAGATTCTGTGACTGAAGAGGCTCGTAAATACTTATTTGCGGTT
TGTTGTGATCCAAGTATCGAGGTACTGGGTCTGTGGGAGATAAGACATTA
TTGAATCTATTAGTTTGTTGATGCGAAACATCAATGAACCTTTTGCCTGG
TAGATTTGATGAAAGTTCACCAGAGATGCGTTGAGTACGGTAATTAAGCT
GGTTAAACACACTGTTGGACAAAACTCTTTCCTGGTGAGATTGCCGCAAC
TGGTTCAAAGAGATTGCGGCTGGTCTTTGCTGAGATGTGGACTGAGGTTC
GTAAGTAGGTCTATTAATGTCGAATATTGGATTACTGTTAGAAGGGTTCC
TTTCAAGATAAGATTGTCTTTGTTGTGGTGCAGTAGATTGCTGTTCAAAA
GATGTATTCAATGAGGGtctttcaatctcaaaattggAATTAGAAGATGA
TCTATCGAAATGCGATTGCCGTAATTGGTTCAATGATATGACTTGTCTTT
GCTGCTGGTTGTGCGATAGATTGTCCAGACGCTCGAAGGTCGCACTGGTG
GGTCGTTCAAGCAATTGAGGGTCTGTTGGCTGCTCAAAGGAAACATTTGC
TGATGAATCTGATCGCGAGACAGCTTGATCAAAAATTGGAGTATCAGCTC
TTTGGCTCGTTGCAAATGTATTATGATGAGTATTTTCACTTGTTAAGGTT
GTATAATTATTGTTGTTGGCTCTGGTGACGTCGAAATCAACACGGTTAGT
ATCTTCGTCTCCATTATTGGGTGTAACAGTTCGGTTGTAATGTTGGGTGG
TGTTCGTTATAGACGGCTCTGTATGGTTGACCATTGTTTCTTGACATGTT
AGCTCGTTCGTGGCGCCCGATTGGGGTTGGATTGTTAGAGAATTCGTTTG
GTAAGAAGTATTTATCTCTGGAGAGAGCACTTGAGTCATTGTAGGTGTAA
CAGAAACAGGTAATATTGCTTGACACGACGCAGTATTTTTATTGACATCA
CTTGTAGTTTGAGTAGGCTGGCATTGGTGTGTTTGCAAATCTAAAGGTTG
ATTAAAAGTCTGCGTACAGTTCTCGCACGAGTAAGGTTTAGGGCCTGAAC
ATGTGTGCGTTTTTAAAGCGGTTGAACGGTCAAACTTTTCACCACATACA
GTGCAGTTATATAATTTCTCGTCGTGCGTTTTTAAATGCCTTTTAAGATC
ACCCGACTGTATGAAAGCTTTGCCGCAAATATCACATTTGTATGGTTTCT
CTCCCGTGTGGATACGATGGTGACGCTGGGCGTTACCAAGACTACCAAAA
GTTAGCCCACAAACATCGCACTTGTATGGTTTTTCGCCCGTGTGTGTACG
CACATGTCTTTGTAGGTCACTACTACGTAAAAAAGCTTTATCGCAGAACT
CACACTGATAAGGCTTTTCATTCCCGTGTGTTTTTGTATGGCGCTGAAGA
TTGCTCGAAACGCTGAATTCCAATCCACAGACTTCACATCTGAAAGGTTT
TTCACCAGTATGGATACGACGATGTGAGTTCAGTGAACTCATTTGGTTAA
ACGCTTTATCACAGATATCACATTTGAATGGTTTCAATCCCATGTGGATC
CATTGATGTCGTTGAAGGTTATTAGAGGCGacaaatgttttaccacattc
cTCGCACTCGTAAGGTTTTTCACCTGTATGTGTTCTAACATGTCTTTGAT
AACTACTCGAGGTTGGAAATGCTTTACCACAATCCTCATACTCACACTTG
AACGGTTTCTCACCTGTGTGGCGACGGATGTGAATTTTCAAGCTGTTTGC
TCGTGTAAACCCTTTACCACATATCGTACACTTATGAGGAGTTTCACCTG
AATGTTTACGTAAGTGTAGCTTGAGATGcgaagagaagtaaaaacctttc
ccACATTCCTGACAGTGATGTTTCTTTTCTGGAGGTGTAAATAAAGGatc
tttgatgacgtcattctcgTCAATTTCCGATTCGGAATCGTCCTCGGTTT
TCGGAATTTTGTTATCTTTTCCTCTTCATCTTCGAGAATCTA
Run BLAST on NCBI

transcript from alignment at scaffold_311:344467..347666+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058442 ID=TCONS_00058442|Name=TCONS_00058442|organism=Clytia hemisphaerica|type=transcript|length=3200bp|location=Sequence derived from alignment at scaffold_311:344467..347666+ (Clytia hemisphaerica)
CTCTGAAACTTGGCAATACACGGGTTGTAAGATATTATAgcagtgcagtc aaaacatgcgattactcgaaaaattccacgtgattttattcccatgttac ttggtATATAACTcatatttaattattttattcGTTTTAATGAATTCGag ccaatcagaaataaatgtcatgtaacaagcacataaacttttcgagtaaa agcgtgatttgacgtcaaactttatttttgcaacctgtgtattgagTCTG ATTTTCACTGgtttaaaaaagatatttgaaatAATGTTTTGTCAGTTTTG AAAGAAAGCCATATCTCATATTAGCCCGGGGGCaacttatagctttttga tagactggatggcgctgataagtacTTCACTGGGCTCCAGCAGCATCAAA ACCATCGTTCAGTCAGAAGTGGACTCTAGTCTACcgtataattttttgaa aaaacgcgATGGACTTGATGATGAAAACAATCAGATTTGAtctttagaat aaaaaaaaaatatcaaaaatatcaaatttaaccCCCGAGAATTGAACACT GTGGAGGGAACTTAGTAAAATATTACCACATACcaaaaaaaaatgattca aGTTTGATAATGTGAAGTGGTGTGCTGTTGTTGGGTACAGAAATGATTGT GGAGAGATTCAATCTCATCGAAACTTAAGCCACAGAAACTACATTTGTAC ATTTTCTCTCGACGGGCAATACAATTATGTAGTTCTAAATCAGTTGGATG ATTAAAAGATGCTCCACACGGGTAACATTTATAAGACTTTTGTTGACGGT ATGAACAATCATGCATTTGCATATCGACAAGCTGGTTAAAAGTCATCCCG CACGCTCCACACCTGTGAGACCGTTCTCTGTAACTACAATGATGCGTTTG CAGCTCTGACGCTAGATTGAATGTCATTCCGCAGGCGCTACAATGATACG AAGGTGTATCACGTCGAAATTCGCAGGTATGGTTTCGAAACTCGGTCGGG TGGGTGAACGTCAATCCACAGCTGTTACAAGGTAATAGTAATCGTTCGCT ATTAGCGAGATTCTGTGACTGAAGAGGCTCGTAAATACTTATTTGCGGTT TGTTGTGATCCAAGTATCGAGGTACTGGGTCTGTGGGAGATAAGACATTA TTGAATCTATTAGTTTGTTGATGCGAAACATCAATGAACCTTTTGCCTGG TAGATTTGATGAAAGTTCACCAGAGATGCGTTGAGTACGGTAATTAAGCT GGTTAAACACACTGTTGGACAAAACTCTTTCCTGGTGAGATTGCCGCAAC TGGTTCAAAGAGATTGCGGCTGGTCTTTGCTGAGATGTGGACTGAGGTTC GTAAGTAGGTCTATTAATGTCGAATATTGGATTACTGTTAGAAGGGTTCC TTTCAAGATAAGATTGTCTTTGTTGTGGTGCAGTAGATTGCTGTTCAAAA GATGTATTCAATGAGGGtctttcaatctcaaaattggAATTAGAAGATGA TCTATCGAAATGCGATTGCCGTAATTGGTTCAATGATATGACTTGTCTTT GCTGCTGGTTGTGCGATAGATTGTCCAGACGCTCGAAGGTCGCACTAGTG GGTCGTTCAAGCNCGAAATGGGATTGCCGTAATTGGTTCAATGATATGAC TTGTCTTTGTTGCTGATTGTCCGCTAGATTGTCCAGACGCTCGAAGGTCG CACTGGTGGGTCGTTCAAGCAATTGAGGGTCTGTTGGCTGCTCAAAGGAA ACATTTGCTGATGAATCTGATCGCGAGACAGCTTGATCAAAAATTGGAGT ATCAGCTCTTTGGCTCGTTGCAAATGTATTATGATGAGTATTTTCACTTG TTAAGGTTGTATAATTATTGTTGTTGGCTCTGGTGACGTCGAAATCAACA CGGTTAGTATCTTCGTCTCCATTATTGGGTGTAACAGTTCGGTTGTAATG TTGGGTGGTGTTCGTTATAGACGGCTCTGTATGGTTGACCATTGTTTCTT GACATGTTAGCTCGTTCGTGGCGCCCGATTGGGGTTGGATTGTTAGAGAA TTCGTTTGGTAAGAAGTATTTATCTCTGGAGAGAGCACTTGAGTCATTGT AGGTGTAACAGAAACAGGTAATATTGCTTGACACGACGCAGTATTTTTAT TGACATCACTTGTAGTTTGAGTAGGCTGGCATTGGTGTGTTTGCAAATCT AAAGGTTGATTAAAAGTCTGCGTACAGTTCTCGCACGAGTAAGGTTTAGG GCCTGAACATGTGTGCGTTTTTAAAGCGGTTGAACGGTCAAACTTTTCAC CACATACAGTGCAGTTATATAATTTCTCGTCGTGCGTTTTTAAATGCCTT TTAAGATCACCCGACTGTATGAAAGCTTTGCCGCAAATATCACATTTGTA TGGTTTCTCTCCCGTGTGGATACGATGGTGACGCTGGGCGTTACCAAGAC TACCAAAAGTTAGCCCACAAACATCGCACTTGTATGGTTTTTCGCCCGTG TGTGTACGCACATGTCTTTGTAGGTCACTACTACGTAAAAAAGCTTTATC GCAGAACTCACACTGATAAGGCTTTTCATTCCCGTGTGTTTTTGTATGGC GCTGAAGATTGCTCGAAACGCTGAATTCCAATCCACAGACTTCACATCTG AAAGGTTTTTCACCAGTATGGATACGACGATGTGAGTTCAGTGAACTCAT TTGGTTAAACGCTTTATCACAGATATCACATTTGAATGGTTTCAATCCCA TGTGGATCCATTGATGTCGTTGAAGGTTATTAGAGGCGacaaatgtttta ccacattccTCGCACTCGTAAGGTTTTTCACCTGTATGTGTTCTAACATG TCTTTGATAACTACTCGAGGTTGGAAATGCTTTACCACAATCCTCATACT CACACTTGAACGGTTTCTCACCTGTGTGGCGACGGATGTGAATTTTCAAG CTGTTTGCTCGTGTAAACCCTTTACCACATATCGTACACTTATGAGGAGT TTCACCTGAATGTTTACGTAAGTGTAGCTTGAGATGcgaagagaagtaaa aacctttcccACATTCCTGACAGTGATGTTTCTTTTCTGGAGGTGTAAAT AAAGGatctttgatgacgtcattctcgTCAATTTCCGATTCGGAATCGTC CTCGGTTTTCGGAATTTTGTTATCTTTTCCTCTTCATCTTCGAGAATCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036825XLOC_036825Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058442-exon-scaffold_311-1491911889:344467..346054TCONS_00058442-exon-scaffold_311-1491911889:344467..346054Clytia hemisphaericaexon
TCONS_00058442-exon-scaffold_311-1510915933:344467..346054TCONS_00058442-exon-scaffold_311-1510915933:344467..346054Clytia hemisphaericaexon
TCONS_00058442-exon-scaffold_311-1575043694:344467..346054TCONS_00058442-exon-scaffold_311-1575043694:344467..346054Clytia hemisphaericaexon
TCONS_00058442-exon-scaffold_311-1491911889:346163..347666TCONS_00058442-exon-scaffold_311-1491911889:346163..347666Clytia hemisphaericaexon
TCONS_00058442-exon-scaffold_311-1510915933:346163..347666TCONS_00058442-exon-scaffold_311-1510915933:346163..347666Clytia hemisphaericaexon
TCONS_00058442-exon-scaffold_311-1575043694:346163..347666TCONS_00058442-exon-scaffold_311-1575043694:346163..347666Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:344467..347666 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0.17212 tpm) - - (3.70999 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.56901 1.31803 0.834399 0.760793 2.78679 1.77588 2.1385 2.14269 0.92851 1.85291 1.97311 0.980022 0.84858 0.649868 0.668005 1.04098 0.7996 0.69108 0.51361 0.205901 0.668005 0.95834 2.18235 1.828 2.7488 3.70999 0.246461 0.17212 0.741031 0.948559
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058442 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
50010001500200025003000Expect = 4.75e-94 / Id = 51.48Expect = 2.24e-85 / Id = 51.48Expect = 2.54e-85 / Id = 51.48Expect = 9.09e-77 / Id = 51.48Expect = 5.99e-63 / Id = 51.48SequenceZN227
Match NameE-valueIdentityDescription
ZN2274.754e-9451.48Zinc finger protein 227 OS=Homo sapiens GN=ZNF227 ... [more]
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