TCONS_00058864 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058864
Unique NameTCONS_00058864
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1109

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058864 ID=TCONS_00058864|Name=TCONS_00058864|organism=Clytia hemisphaerica|type=transcript|length=1109bp
gtttagaaaaaaagataaataaaagaTGGCGGAATTCATCACAGACTTAT
TTTTGGTTACCAACAAAGACAATGATGCTGGTACTTTCTATCTCGATACC
ACGATGAAAGGGCACGATGGAAATTTATATGAGAGTAGCTGGCGTCATAA
AGGTAAAAGATTGATAGGTTTCAAGAAAAGTGCAGAAGATGAGTATGTAG
TGACAGACATTGTTGTTGTGACAGATGATAAAGATGGACCTGATGATTAT
GCACCTATCCCTATCACCAAAGATACTCGAGAGAAAGGTCTGAAGAAACA
TACCGTCTGTTATTCAAGAGGCCATCGCCAATCGTCAGAAAAAGCGATCA
CAGAAATCTATTTGGTCAACCCATCCAAAAATGAAGCAGTTCCACCATAT
TTTACTGCAGTGAGCGAAACAGTGAACGACATCACGATTTGCTTCAAAAC
AGAAGcaattccaaaaatcaaaagaccAGCACCTTCAACTCCTCCAAAAG
AACAATCGCAACTTCTCAATACGGCACCGAAAGTTTCAGTTAGTTCAGGC
ATAGATGGTGTACCGTTTCAGATCAATCCTAAGTTCAACACAAGCTCTGG
TGGTAGTGACCCTTTGATCGCCAATATGCTGTTCGTTTCACCTGAGGACA
TACAAAGAAAGTATCAATATTCATTCGATCTTGAACGTGAAGTGACAAGA
TGAGTAGGAAAAAACCTTATCATCTGACGGAGATATGTTATTACGATTGA
AATTATAATCTAGGACTGGGCCTAGTTTGATTTTGTCTACAGATATTCAT
TGCCGTAGATTATGTAAAAACGAAAAATCGTAATGAACAACAATTCGACA
CGAATCTTATTTATTGATCGACTATCATGATTGGTTGATTTATTCAAAGC
AGAAGacatgattttcttttttaaatccttTTTATTTGCTGATGTAGTAA
AATTACCGCATTAATTTTTCGTTAATTTTGCCGTGatgtgattttatttt
gttcgAAATACTCTTTGTACTCTTAGGTTcgaaataaacgccccctcccc
cgcttgttagtttttcagaaattttccaacgccccggaccttattaggac
ccccccccN
Run BLAST on NCBI

transcript from alignment at scaffold_314:55444..59048-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058864 ID=TCONS_00058864|Name=TCONS_00058864|organism=Clytia hemisphaerica|type=transcript|length=3605bp|location=Sequence derived from alignment at scaffold_314:55444..59048- (Clytia hemisphaerica)
GTTTAGAAAAAAAGATAAATAAAAGATGGCGGAATTCATCACAGACTTAT
TTTTGGTTACCAACAAAGACAATGATGCTGGTACTTTCTATGTAAGAAAC
GCTTTTTCGAATTTTTAGACAAGAAATTGATCAATTGTATACTATTATTT
CCGCCAAATTATTTTTTCCAGTTATCGGCTAAATTAAATCCCCTCTTAGA
CAATATGACATGGCGTCAAAACTTGGCAAAAGGAGTCAGTATTATGGCTT
AACTCACATTTTATTGTGCATGGTAAACACAACCTTGTGATTTAACCAGA
GTTTTTATTCTTAAAATAATTTTTAATTCTTTTTGGTTTAAAAGTATTTC
AAATTACTTTCTTTGGAAGAAGCAGGATAGTTGATAGCTCCTGATGTCTA
GCTCCAATCAATATATCAAACTTATATTAATAATTAGTTCATGATTTTTC
GCATCTCCTTTAGCTCGATACCACGATGAAAGGGCACGATGGAAATTTAT
ATGAGAGTAGCTGGCGTCATAAAGGTAAAAGATTGATAGGTTTCAAGAAA
AGTGCAGAAGATGAGTATGTAGTGACAGACATTGTTGTTGTGACAGATGA
TAAAGATGGACCTGATGATTATGCACCTATCCCTATCACCAAAGATACTC
GTAAGTCGAGGACCTTTCTAGGATTTTTTTTCCTGTGGAATTTACTCAAG
GAAAAAATGTTCTTTATGAAGTTCTATAGGCAGTAAGATAAGTAGAAAAG
AAATTACGTCAAAAATCTAAAATAGTGTTTAATCTAATCGTCATATCAAG
ATTTTTAAGTCAGCGTTATTTTTTGTCCTTGTCTAGTGTTTCTGCAATAT
GTCAAATGAAACATTATTTGCTTCGTCTTATCATTGCAGGAGAGAAAGGT
CTGAAGAAACATACCGTCTGTTATTCAAGAGGCCATCGCCAATCGTCAGA
AAAAGCGATCACAGAAATCTATTTGGTCAACCCATCCAAAAATGAAGCAG
TTCCACCATATTTTACTGCAGTGAGGTGATTAAAATACGGATTTACGAAC
CTAGTTCAAAATTTTAGAGCAACCCCCCCCCCTACTCTAGGTTTAACCAA
AAGATTTATGGAATTCCCTCAAAATCGGGGTATCATCGTGATTCTTTCCC
ACTTTCAAGACATTATGCCCTACTCATTTTAACTAAAAAGATAGCATATT
CATTCTTGAACAGTATCTCTTCTGAAAATTGGTTGAAATAGATTGTGAGT
GAAGCGAACAAGACAATTTTTATGATTTTAATCCAGTCCAAGACTGCAAA
ACTAGAAATTTACCAATGTATTACTTATAAAGGGGGGTTGGGGCGAACTA
TGACGAGTAAGAAAATTCACCAGTCCTTTCCCATCTAATGGCTTTCATAT
TTTGTTTATTTGTTATAAACTAACTGGTCACTTCTTTTTTACTTCAGCGA
AACAGTGAACGACATCACGATTTGCTTCAAAACAGAAGCAATTCCAAAAA
TCAAAAGACCAGCACCTTCAACTCCTCCAAAAGAACAATCGCAACTTCTC
AATACGTAAGTTAATCAACACGTGTTTCACTATCTAGTGATATGCAATTT
CTAATATTCTAAAAGCAACTGGATACGATGCAAAGGTTGTGGGTTCGACC
CCCTCTCCCATACTTATGACCTAAGACCTTATGACCTAATGATGCATCTC
TGGTTGATCTTAAACTTCTCTGTTACAAATAGAATAAAAATATACGTTCT
GCTCGCATTTCAAATGGTTTTATGTTTTATTGTGAAAAAAAAATATCTCC
GCTCAAAGATTTTGCCTTATGTACACTCCCAATGTAAACCCTAAATCAGG
TGTTACTCGTATTTTCGTTTTATTTACTAGGGCACCGAAAGTTTCAGTTA
GTTCAGGTAGGACTGAAAATATGACTTTATTTACGAAATATTTCTCTATT
ATGTCGTAATCAGACGCTTTTAAATTTTTGCCTTATGCTTGCTTTATATG
GTAGCCCCATTTGCTTTTGGCAAAGGAATGAAATTTCTATGTGATAACTG
CAAAATGATTTCATATTTACATTACTTTTTTGCCTTTTCTTTCATTCTGT
AGGCATAGATGGTGTACCGTTTCAGATCAATCCTAAGTTCAACACAAGCT
CTGGTGGTAGTGACGTATGTTGTTTCTTTTATTCATTCTTTATATTCGAT
ATTACCTCATTGTATCTTTCAAAACGAACAATCCTGTCTCATCGATGTTC
TCCACTGGGAAGATCGATCCAATGTTTTGATCCCTATTGGGATTCAAATG
AAAAGATGCAGTCCTAAACCATCCCCACTGGCGTTTATGAGCTGGAAACA
ACAGTTCGATGGGAATAGATTTAATCGGCATTTTGATCGAAGTTTTCATG
CATATACTGAGAAAAGAAAATCCACCGGGGGCATTGAGAAAGCGGTGTAA
ATGAAAACGATTATTTTGTAGCCCTGAGAAAAGTTTTTAGTTCAATCAAA
ATCAATTGTCTTTGCTAATATAACTAGCAATGATAATGAAGACTTATGTT
ATAGATATGCCTCAAATCATGATAACTAACCTGCTACTTAATCACAAAGT
CTGCTTTACTCCAAATAACTTATTCTGTATTTTCTGTTGCAGCCTTTGAT
CGCCAATATGCTGTTCGTTTCACCTGAGGACATACAAAGAAAGGTAATCC
TTAACATTTCAAATTCTCGACTAACGAATATTTTGAATTGATATCGATCG
TTTGGTGTATCTTCAAACCCTCCTGTAGCCCCAACCCGCTTTGGATTTAA
TGTATCTGTCCGTTTTTCTGTTTCATACCTTTCATTTTTCTTGATCAAGA
TGTTTAGTTCGTGATAATACTATGTCGTAGTACAGTGGAGTCTCAATAAC
TCGAAAGCACACAAAAGGGTAACACAAATTCGCTCGAGTTAAGGAAATTT
TGAGTAATACAGTAAAGCTTATAAGCCATTGTCAACTGAAGGAACTATAA
AACATGTTTGAGTTAGGAAACATTCGGGTTATGGAGGTTCGAGTTTCCAC
TGTATCATTGCAATAGTAACTTCAGCCACATAACTATCCCACGAAGTAGA
TAACGCGATTTCTTTCCTCTGTGTCATTTCGACATCTTTTTTCTTCTTCT
TCATTAGTATCAATATTCATTCGATCTTGAACGTGAAGTGACAAGATGAG
TAGGAAAAAACCTTATCATCTGACGGAGATATGTTATTACGATTGAAATT
ATAATCTAGGACTGGGCCTAGTTTGATTTTGTCTACAGATATTCATTGCC
GTAGATTATGTAAAAACGAAAAATCGTAATGAACAACAATTCGACACGAA
TCTTATTTATTGATCGACTATCATGATTGGTTGATTTATTCAAAGCAGAA
GACATGATTTTCTTTTTTAAATCCTTTTTATTTGCTGATGTAGTAAAATT
ACCGCATTAATTTTTCGTTAATTTTGCCGTGATGTGATTTTATTTTGTTC
GAAATACTCTTTGTACTCTTAGGTTCGAAATAAACGCCCCCTCCCCCGCT
TGTTAGTTTTTCAGAAATTTTCCAACGCCCCGGACCTTATTAGGACCCCC
CCCCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037079XLOC_037079Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058864-exon-scaffold_314-1575043694:58958..59048TCONS_00058864-exon-scaffold_314-1575043694:58958..59048Clytia hemisphaericaexon
TCONS_00058864-exon-scaffold_314-1575043694:58399..58585TCONS_00058864-exon-scaffold_314-1575043694:58399..58585Clytia hemisphaericaexon
TCONS_00058864-exon-scaffold_314-1575043694:58024..58159TCONS_00058864-exon-scaffold_314-1575043694:58024..58159Clytia hemisphaericaexon
TCONS_00058864-exon-scaffold_314-1575043694:57494..57601TCONS_00058864-exon-scaffold_314-1575043694:57494..57601Clytia hemisphaericaexon
TCONS_00058864-exon-scaffold_314-1575043694:57143..57168TCONS_00058864-exon-scaffold_314-1575043694:57143..57168Clytia hemisphaericaexon
TCONS_00058864-exon-scaffold_314-1575043694:56885..56946TCONS_00058864-exon-scaffold_314-1575043694:56885..56946Clytia hemisphaericaexon
TCONS_00058864-exon-scaffold_314-1575043694:56356..56406TCONS_00058864-exon-scaffold_314-1575043694:56356..56406Clytia hemisphaericaexon
TCONS_00058864-exon-scaffold_314-1575043694:55444..55891TCONS_00058864-exon-scaffold_314-1575043694:55444..55891Clytia hemisphaericaexon
TCONS_00058864-exon-scaffold_314-1510915933:58958..59048TCONS_00058864-exon-scaffold_314-1510915933:58958..59048Clytia hemisphaericaexon
TCONS_00058864-exon-scaffold_314-1510915933:58399..58585TCONS_00058864-exon-scaffold_314-1510915933:58399..58585Clytia hemisphaericaexon
TCONS_00058864-exon-scaffold_314-1510915933:58024..58159TCONS_00058864-exon-scaffold_314-1510915933:58024..58159Clytia hemisphaericaexon
TCONS_00058864-exon-scaffold_314-1510915933:57494..57601TCONS_00058864-exon-scaffold_314-1510915933:57494..57601Clytia hemisphaericaexon
TCONS_00058864-exon-scaffold_314-1510915933:57143..57168TCONS_00058864-exon-scaffold_314-1510915933:57143..57168Clytia hemisphaericaexon
TCONS_00058864-exon-scaffold_314-1510915933:56885..56946TCONS_00058864-exon-scaffold_314-1510915933:56885..56946Clytia hemisphaericaexon
TCONS_00058864-exon-scaffold_314-1510915933:56356..56406TCONS_00058864-exon-scaffold_314-1510915933:56356..56406Clytia hemisphaericaexon
TCONS_00058864-exon-scaffold_314-1510915933:55444..55891TCONS_00058864-exon-scaffold_314-1510915933:55444..55891Clytia hemisphaericaexon
TCONS_00058864-exon-scaffold_314-1491911889:58958..59048TCONS_00058864-exon-scaffold_314-1491911889:58958..59048Clytia hemisphaericaexon
TCONS_00058864-exon-scaffold_314-1491911889:58399..58585TCONS_00058864-exon-scaffold_314-1491911889:58399..58585Clytia hemisphaericaexon
TCONS_00058864-exon-scaffold_314-1491911889:58024..58159TCONS_00058864-exon-scaffold_314-1491911889:58024..58159Clytia hemisphaericaexon
TCONS_00058864-exon-scaffold_314-1491911889:57494..57601TCONS_00058864-exon-scaffold_314-1491911889:57494..57601Clytia hemisphaericaexon
TCONS_00058864-exon-scaffold_314-1491911889:57143..57168TCONS_00058864-exon-scaffold_314-1491911889:57143..57168Clytia hemisphaericaexon
TCONS_00058864-exon-scaffold_314-1491911889:56885..56946TCONS_00058864-exon-scaffold_314-1491911889:56885..56946Clytia hemisphaericaexon
TCONS_00058864-exon-scaffold_314-1491911889:56356..56406TCONS_00058864-exon-scaffold_314-1491911889:56356..56406Clytia hemisphaericaexon
TCONS_00058864-exon-scaffold_314-1491911889:55444..55891TCONS_00058864-exon-scaffold_314-1491911889:55444..55891Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_314supercontigscaffold_314:55444..59048 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
27.8097	24.1381	18.5067	16.1873	19.0487	18.0094	28.4797	30.2142	21.7732	22.2514	21.4759	18.1834	14.724	15.5646	22.0868	24.8453	26.2962	25.5228	27.6331	35.8479	27.9389	26.3976	28.5831	27.9601	8.85787	9.90974	28.2387	21.627	29.639	22.485
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058864 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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