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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058895 ID=TCONS_00058895|Name=TCONS_00058895|organism=Clytia hemisphaerica|type=transcript|length=1102bp
ATTGGACTGGCTAATCTCCAAAGTGAAAGTTCAATCGATTTTGCGCGCAA
AACATTCAAAGATGCAAATAATCTAGACATTGATTGTGCTGTGGTCTGCG
TCTTTTACGCTCAATTCGAAGTGCGTCAAAATAGAAAGAGTGAAGCTACA
AGTATCATTCGGAATGGGAAAATGGACGGACGAACGCCACGTTTCTTGCT
CAAAAATGCTTATCACAACTTGAGAGATAATAAGAGTAACTTATTTGATG
GGATAACCGACCCTTGGGATGACTCATTGCACGATATCACCGCAACCGCT
ACAATCAAGAGCAACCCGGAAAGATCACCAATTAATAAACCCATCCCACT
GAACGGGTATTCAAACAGTACACGTAAAATGTTACATCTCGGTAAACCAA
CACGATCAGGGTCCAGCCTTCTAAAAGAATCAACGCCAAAAAGCCCTACG
GAAGAAGTGAAAGCTAAGTTAGGATTAATCGGATGCTCAGCATCAAAACC
GCCCAATGTTTCGTTGGAACCGGTACGACCGCCCAGCTCTGAGAAAGAGG
ATTCGGATGAAAAACAATACCGCCCTACCTTATCACCCTTCAGTCTTACC
GCTAACACACCCAAAGTTAGTAAAGAAAAGAAAAAGTTATTCGAAACACC
ACAAGGGTTTAATTTCAATATTTTTGAGAGTTTATCTAAACAGCAAACGG
AAAAGAAACGTGCTCAAGATGAGGCCGACAAAGACATTGTTACCAGTTTA
GATTTCCAGAATTCATCCTTAGACGAAGGAACTGTTCCAATAACAAATGA
AACTCTCGACGACGAACAACGCTCTGTTTTCCTTGAAAACGAAGGTACGT
GCTGTATTGGGGACCAAATTGCAGATGTCAGCAATCAGCCTAACTACCCA
CAAGAAGTCAAACAGAAGAAATCCTCAAACTTTGACAAGATATTAGCACA
AGTCGATGATGATATTAAGAAATCAAGAAGCTTTCTTAACCAGACCGAAC
ACAAAACCAATCATGCTTTGTTTCAAACTCCTATCAACAAAAATAGAAAT
GCGAAGTTCCAAACACCAATTGATAAGATGAGTATCAAATCTGATATCAA
CC Run BLAST on NCBI transcript from alignment at scaffold_314:465120..471346- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058895 ID=TCONS_00058895|Name=TCONS_00058895|organism=Clytia hemisphaerica|type=transcript|length=6227bp|location=Sequence derived from alignment at scaffold_314:465120..471346- (Clytia hemisphaerica)
ATTGGACTGGCTAATCTCCAAAGGTATATTTGTTTTATCGACTTTCGTTT
TCAAATTCTTTGTAATATTTAGGCGTTACCTCTTCATCTCCGCACTTTTT
GGTATCTGAGAATGTTTTAACGTAAAGAGCAATTGACTTTTGATTGATTT
TAGATTGTAATCAGCCCATTTTAACGATGAAATGTATCTTTTATAATTGT
TCAAGTTCAGAGATGTTTTCCGGATGGAATTTCGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCAGAGATGTTTTCCGGATGGAATTTCGGATCCAA
AAGTGCTCTTCATCATTGTTTCATAAAATATGGAGATCGTGTGACATGTT
GAGACCATCAGAATAAATCAAAGAGCCACGTAACTCTCATAATTCCAAAG
TTCATAAAATCTAATATTTTGGAATATTGAATCCTTCTTCGCTCCTGGGA
CCGAAACCAAAGCTCTAAGCTCGTGTGCTCCACCTTTTTGGAAGATTTCA
TCCCAAAATCCTTGTTGAAACTTATATTATTCAAGAAAAACCGTTTTTTA
GAAAATTTAATGTCACGTTTTCGCCAAAAGTGTAAAAAACACCGACATAG
AAAAATAAACAGTGGAGCCCAATCAAAAATGGTGCGACATTTAGTGTGAC
ATTTTGAAAAATGCCCAAAAACAACTTTGTAATCGATAAGTCTTGAAATT
TTACAATGTTGTAGGAAATACTAAGACATAATGAATAAAAATTCTTTTTT
CGTTTAATTGGGTTAAAAATGTGGCTTCAACTCAAAATTCGGCTTCAACT
CAAAATTCGTATCTTTTTTAGAAATGTAAGCCACACAAATTAGATAAGAG
ATCTTAGAATGGGACTTTCTTAACTTGACAGAGGAAAGGTTGAATTAAAA
AAAAAACAAGTTAAATGTGTATACTTTCTAGCTGTTAGATATACTTTTTT
GTGGCTTACTTTTCGATAATTTTCAATCTAACTTTGTAAGGCACAAAATT
GTACTTACAACAAAATCTTTGTAATTTTTTACACGTACCAGCACCTACTG
GTGTTATACTTTAATAATGGAGTGCCAAAAAACAAAAATTGCGTGACATA
AAATTTCACCTATATTTAACCTATATTTCACCTATTCACCTATATTTCCC
TTGTGTAAGCCACATTTTTGCCCACTTACTTAACAAACTGTAAGCCAAAA
ATCAGTGCAACCAATGAAAAATTTAGCCCTTTGCTGGCAATGCTGAAAAG
AAAGTATATTTCTGACTGTTTCCATTATTGAGAACTCAGCCTTCAAAATT
TCTTGGTCGGGCAAAAAAAAAAAAAAATGCAGTGTTTCAGGAAACCGGCC
GGCCGGGTGAAAAAAGAAAATTTTGACCCGGCCGCAGACTATTGGTTCAA
ATAATCACTATATGGTTCATCATAAAGAAGATCAAGTTGACCGTTCAAGC
TATCAAACGTCATTTGGTTAAGATATTCCCGCTTGTAAATCAAGTTTCGT
TTGTTTGTAGTTGATACATTAGTATTCAGGGCTTACTCCATACTGTTTGT
ACTAAACCAGCGTCCGAGATTCAGAAAAGGCAAATTTTTGATATTATGCT
CATAATAGGGTGTAGAATTGACAAAAAAAATTTGCCCTTCGAATCTCATG
TAGTTTTCGAGTGAATCGATTTTTGGTTAACTGATAGAACTTATCAACGG
TTTTTTCGAAGCCTGAAAATCAAATATCTGAGGTTACCAAAGGATTCAGC
GTGAAAATTAGGTAAAGAAAATGGGGTTATTTGTTAATTTTCGACCACCT
GGTGCCAAGAAATGGCGTTTTCCGATGACGTCAGCATTTTCCTAGCAGCA
TTTTCAGAAAAAGGTTTTTCCTCACAGCTGGATAGTCCTGAATTAGTAGT
ATACAAAAATGGTATGGTTTGTTAACTTTCGATGTCTAGATCTCGAGATA
TTTTGGTTTAAATATTGAAAATTATCGATATTTTTTGCTGAATCAGCAGT
TTTTCAGCATATTTACCAACCTTAAAAATGAAATATACACCCTATTAGAG
ACTGACGTGTTTTATTTTCCTTTTTTACTCAAAAATTTCGCAATATTTTT
TTCTATTATATTCAGTGAAAGTTCAATCGATTTTGCGCGCAAAACATTCA
AAGATGCAAATAATCTAGACATTGATTGTGCTGTGGTCTGCGTCTTTTAC
GCTCAATTCGAAGTGCGTCAAAATAGAAAGAGTGAAGCTACAAGTATCAT
TCGGAATGGGAAAATGGACGGACGAACGCCACGTTTCTTGCTCAAAAATG
CTTATCACAACTTGAGAGATAATAAGAGTAACTTATTTGATGGGATAACC
GACCCTTGGGATGACTCATTGCACGATATCACCGCAACCGCTACAATCAA
GAGCAACCCGGAAAGATCACCAATTAATAAACGTAAGTTGTTTTAGCTAC
CAAGTCTTTTTTATTCGAGTTAATCTTAGTTCATCTTCTTGATTTCGACA
TCTGAGATACAAAAAAGTGGAGATGGAGAAATTTTTGACTTATCGAGTTC
ATGTTAAAAGTAATGGTACTACAAAATCATTATTTAATAAATATTAGTAA
AAATATTCAAAAACAGGCGAGTAGACATCAATTTGAAAAACCATTGTTAA
GAGAAGACTTTCAGACCTTATTTTTTTTGCTGATTATGATGATCGATTTT
AATATAAAAGGTTTCGTGAAACACTAATTGCGACCACCAAGTCCTATTAG
TTCCATCGGTGTTCTGTCGAATAGAAATCCTAATGTAACATGCAAAAGAA
TATCAGTCCCTTTTTTCATCATAAAGTTAACATAGCGTCAACCCCCTTGA
CATGGGGGGGGTTACACCCAAAAAATTGCAAACGAAAACTGGGAGCTAAA
ATACAGCCAAATATTTGGGAGGATCTGATATTGGGGGGAGGGGGCTGGAT
TTTCAATGGCAAGGCTGGAGGCTGGCTGTTTCTTCTGTTATTTTTCTTTA
TATCACCACATTTTTATCCCAAAACCTTTCATTTTACAGTCTATTGAATA
TGTATGTTTTCACTTGTGTCTACCATCACGAATTAACAATTATAGTCATT
ATTAGTCAATTAAGCCCGTTAAGATTTCGAGAATGGCTATTAGAAAAAAG
GAATTTTTTGCTGGAAAAAGACGTTACTAAAGTCAGGGAACCGTTTTTAG
ATTCTAAGCTTTGTTGAAAACACTATATTATTTCCAGTAGCGGCCTGGCT
TAATTTTCTTGGTGGTGCAAACTATGAAATTGGCGCCCCTAGTATTTTTG
TCCTTATTTGCGCCCTATACCAGTAAGTGAAACTATTANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CGGAATCTCTGAGTTAACAAAGTTTTATTTATACGAAGGTGGTGGTAATG
ATAATTTGATATCTATTTCCTTGTTATTTCCTGGTCTTGGACTGTACTCT
CCATTAAAGCAGGGCCGGCGAATCGGTTTTAAAAGTGAGGGGGCTAAATG
ATATAGTGACTAAGGAGGCCCCATCATGGTTGGGGCCGACGGACCGGAAA
TTTTTGAAATTATGGTACTCTACATTGGCTTAGAATTGGCCTAAATTTAA
TTTTTATGAAGTTATTGGAATGAAAAAATCAAAGAAGTTAGGTGTCTTTT
TATACTGATAATCACCAAAGAATATACTACCATATAATAACAAAATGAAA
CCTATAAGATAGGATAAGAGTCTTTGTAATTTGGTAAGTAAATAATAAAG
TTACCACGTTTCTTATTTTCTTTTTTTCTCTCACCCTCTCTTTTACTTTC
TCTCTCTCTCTCTCTCTCTTTTTTTTTTTTTGCAAAAAAGTGGAGGGGCT
ATAGCCCCCCTAGCCCCCCCCCCCCCGGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGTTTTTGTCG
GGAAAAAGTCAAAATGGAAGTTTGAAAAAAGTCAAAAAAAAGTCAAAAAG
TCAAATAAAAGTAAAAAAAAAGTCAAAAAGTCAAATGAAAATTTAAATAG
TCAGAAAGTATCATACACCTTTTTTCAAGTGATTTACCCCTCGATGAAAC
CTATAAGATGGGATAAGGGTCTTTGTAATTTGGTAAGTAAATAGTAAAGT
TACCACGTTTCTTATTTTCTTTTTTTCTATCACCCTCTCTTTTACTTTCT
CTCTCTCTCTCTCTTTTTTTATTTTTTTGCAAAAAAGTGGGGGGGGGCTA
TAGCCCCCCTAGCCCCCCCGGTTTCGCCGGCCCTGTAAAGATCAATGGCT
GAAAGAGGCCCCAAAAATTCGAAAGTTGGCAAGAATAAGGGTTCTTTGTA
ATTCTAGCGCCGCAGGCAAAAAAATTTGGTGCAAGAAAGGTCAAACAGCT
TATAAGATATTCTAAAAAGGAGAAAGTTAACCCGCATAAGACCACAAAAA
CCACAGCGAGCAGTTTCGATCAATCTCTCATTTTGGGGGTGAGCATCCTC
TTTAACCCCTGGTAACACTTCTCTTGCTTTGACTTTTCGCAATTCAATGT
TGATAGTAGTTTTGAAAAAATTCGTAAAATAAAATGAAGCGCCGCAGGCG
AAACAAAAATTACATTGAACTTATAGAAGGCGCTAAAAACGTGTCAAAGG
GCGCAAAATCGCCCAACCAAACATCAAAAAATTTTTGCGCCCCCTTGAAA
AGCTTTTTTGGCGCCCCTCTCAGGTCTTTCTGGGTGGTGCACTGCACACC
CTGCACCCCCTGCCAGGCCGCCACTGATTATTTCATTCAAAATAAATCAA
AACGTTTCATTTTAGCCATCCCACTGAACGGGTATTCAAACAGTACACGT
AAAATGTTACATCTCGGTAAACCAACACGATCAGGGTCCAGCCTTCTAAA
AGAATCAACGCCAAAAAGCCCTACGGAAGAAGTGAAAGCTAAGTTAGGAT
TAATCGGATGCTCAGCATCAAAACCGCCCAATGTTTCGTTGGAACCGGTA
CGACCGCCCAGCTCTGAGAAAGAGGATTCGGATGAAAAACAATACCGCCC
TACCTTATCACCCTTCAGTCTTACCGCTAACACACCCAAAGTTAGTAAAG
AAAAGAAAAAGTTATTCGAAACACCACAAGGGTTTAATTTCAATATTTTT
GAGAGTTTATCTAAACAGCAAACGGAAAAGAAACGTGCTCAAGATGAGGC
CGACAAAGACATTGTTACCAGTTTAGATTTCCAGAATTCATCCTTAGACG
AAGGAACTGTTCCAATAACAAATGAAACTCTCGACGACGAACAACGCTCT
GTTTTCCTTGAAAACGAAGGTACGTGCTGTATTGGGGACCAAATTGCAGA
TGTCAGCAATCAGCCTAACTACCCACAAGAAGTCAAACAGAAGAAATCCT
CAAACTTTGACAAGATATTAGCACAAGTCGATGATGATATTAAGAAATCA
AGAAGCTTTCTTAACCAGACCGAACACAAAACCAATCATGCTTTGTTTCA
AACTCCTATCAACAAAAATAGAAATGCGAAGTTCCAAACACCAATTGATA
AGATGAGTATCAAATCTGATATCAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058895-exon-scaffold_314-1575043694:471324..471346 | TCONS_00058895-exon-scaffold_314-1575043694:471324..471346 | Clytia hemisphaerica | exon |
| TCONS_00058895-exon-scaffold_314-1575043694:468865..469181 | TCONS_00058895-exon-scaffold_314-1575043694:468865..469181 | Clytia hemisphaerica | exon |
| TCONS_00058895-exon-scaffold_314-1575043694:465120..465881 | TCONS_00058895-exon-scaffold_314-1575043694:465120..465881 | Clytia hemisphaerica | exon |
| TCONS_00058895-exon-scaffold_314-1510915933:471324..471346 | TCONS_00058895-exon-scaffold_314-1510915933:471324..471346 | Clytia hemisphaerica | exon |
| TCONS_00058895-exon-scaffold_314-1510915933:468865..469181 | TCONS_00058895-exon-scaffold_314-1510915933:468865..469181 | Clytia hemisphaerica | exon |
| TCONS_00058895-exon-scaffold_314-1510915933:465120..465881 | TCONS_00058895-exon-scaffold_314-1510915933:465120..465881 | Clytia hemisphaerica | exon |
| TCONS_00058895-exon-scaffold_314-1491911889:471324..471346 | TCONS_00058895-exon-scaffold_314-1491911889:471324..471346 | Clytia hemisphaerica | exon |
| TCONS_00058895-exon-scaffold_314-1491911889:468865..469181 | TCONS_00058895-exon-scaffold_314-1491911889:468865..469181 | Clytia hemisphaerica | exon |
| TCONS_00058895-exon-scaffold_314-1491911889:465120..465881 | TCONS_00058895-exon-scaffold_314-1491911889:465120..465881 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_314 | supercontig | scaffold_314:465120..471346 - |
Blast
The following BLAST results are available for this feature:
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