TCONS_00058934 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058934
Unique NameTCONS_00058934
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length281

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058934 ID=TCONS_00058934|Name=TCONS_00058934|organism=Clytia hemisphaerica|type=transcript|length=281bp
GACCCGCTCCAGTTTGTTAGAAAGTAGGAAAAACAACATCCTTATTTCAC
TATAATGTGTGTATAATAACTCTGCAAATGTGATACCTGAAAATAAGCTT
AAATACAATATAAAAACTGTGTTGGATATGTACAAAATAAATGAGAATTT
ACAAGCtgataaaatagaaatagaaatctaAGAAATAGTGTCTGTAGAGA
AGAACAAACTTTGAAATATGACAGAATCATGCTGACCGTGAAACTAGAGC
CGAGGAAGAATATAAGAGGCCGTACAGAGAA
Run BLAST on NCBI

transcript from alignment at scaffold_314:523418..523698

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058934 ID=TCONS_00058934|Name=TCONS_00058934|organism=Clytia hemisphaerica|type=transcript|length=281bp|location=Sequence derived from alignment at scaffold_314:523418..523698 (Clytia hemisphaerica)
TTCTCTGTACGGCCTCTTATATTCTTCCTCGGCTCTAGTTTCACGGTCAG
CATGATTCTGTCATATTTCAAAGTTTGTTCTTCTCTACAGACACTATTTC
TtagatttctatttctattttatcaGCTTGTAAATTCTCATTTATTTTGT
ACATATCCAACACAGTTTTTATATTGTATTTAAGCTTATTTTCAGGTATC
ACATTTGCAGAGTTATTATACACACATTATAGTGAAATAAGGATGTTGTT
TTTCCTACTTTCTAACAAACTGGAGCGGGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037120XLOC_037120Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058934-exon-scaffold_314-1491911889:523418..523698TCONS_00058934-exon-scaffold_314-1491911889:523418..523698Clytia hemisphaericaexon
TCONS_00058934-exon-scaffold_314-1510915933:523418..523698TCONS_00058934-exon-scaffold_314-1510915933:523418..523698Clytia hemisphaericaexon
TCONS_00058934-exon-scaffold_314-1575043694:523418..523698TCONS_00058934-exon-scaffold_314-1575043694:523418..523698Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_314supercontigscaffold_314:523418..523698 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.658052	0.520002	0	1.76198	2.46721	2.5467	4.44939	1.62492	7.46424	2.69624	0.277084	1.48677	0.732632	0.750924	1.03744	2.71402	0.94359	0	0	0.508662	0.52391	0.935154	2.6764	0.714083	0	0.551811
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058934 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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