TCONS_00058946 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058946
Unique NameTCONS_00058946
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length476

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058946 ID=TCONS_00058946|Name=TCONS_00058946|organism=Clytia hemisphaerica|type=transcript|length=476bp
CTATAATGCCTCTCTTGATGTCGTCGTCCAGACTCTTCTTGACTGCTTCC
TTAAGGTGGAAAGGCACTGGGATGGGGTTATGACGAACATGTGGCTTCGC
ATTAGGTTGAATATGTATGTGGGCAGGTTTTGTATCCATGGATGGAAATG
GTCCGTCTCTGTTGAACGtagttttggaaaattgttctaaTAGGTAATGT
TTGAGTTTTGGAACATTTTCCTCTGTGGGTTCAAAAGGTAATTTTTCTGG
ACGTTTAGGTAGATTACTTGGCAGGGTGTCAACGGAGGAAACGGTTGCTG
ACATGGGATATGGAAATATCTCTGGTAGAATGTTCAATTCTGTACACCCT
TTACGGCTGACGTAAATTCTGTCAACTTTTTCACAAATGTATAGTGGTTG
AGGAGTAGTGTGATTGTCTATTCTGAAAGTCATTGGTAGCCAGCAAGAAC
AATGTAATGTGGATCCGCCAACGGCT
Run BLAST on NCBI

protein sequence of TCONS_00058946-protein

>TCONS_00058946-protein ID=TCONS_00058946-protein|Name=TCONS_00058946-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
AVGGSTLHCSCWLPMTFRIDNHTTPQPLYICEKVDRIYVSRKGCTELNIL
PEIFPYPMSATVSSVDTLPSNLPKRPEKLPFEPTEENVPKLKHYLLEQFS
KTTFNRDGPFPSMDTKPAHIHIQPNAKPHVRHNPIPVPFHLKEAVKKSLD
DDIKRGII
Run BLAST on NCBI

transcript from alignment at scaffold_314:744575..745050

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058946 ID=TCONS_00058946|Name=TCONS_00058946|organism=Clytia hemisphaerica|type=transcript|length=476bp|location=Sequence derived from alignment at scaffold_314:744575..745050 (Clytia hemisphaerica)
AGCCGTTGGCGGATCCACATTACATTGTTCTTGCTGGCTACCAATGACTT
TCAGAATAGACAATCACACTACTCCTCAACCACTATACATTTGTGAAAAA
GTTGACAGAATTTACGTCAGCCGTAAAGGGTGTACAGAATTGAACATTCT
ACCAGAGATATTTCCATATCCCATGTCAGCAACCGTTTCCTCCGTTGACA
CCCTGCCAAGTAATCTACCTAAACGTCCAGAAAAATTACCTTTTGAACCC
ACAGAGGAAAATGTTCCAAAACTCAAACATTACCTAttagaacaattttc
caaaactaCGTTCAACAGAGACGGACCATTTCCATCCATGGATACAAAAC
CTGCCCACATACATATTCAACCTAATGCGAAGCCACATGTTCGTCATAAC
CCCATCCCAGTGCCTTTCCACCTTAAGGAAGCAGTCAAGAAGAGTCTGGA
CGACGACATCAAGAGAGGCATTATAG

Coding sequence (CDS) from alignment at scaffold_314:744575..745050

>TCONS_00058946 ID=TCONS_00058946|Name=TCONS_00058946|organism=Clytia hemisphaerica|type=CDS|length=474bp|location=Sequence derived from alignment at scaffold_314:744575..745050 (Clytia hemisphaerica)
GCCGTTGGCGGATCCACATTACATTGTTCTTGCTGGCTACCAATGACTTT
CAGAATAGACAATCACACTACTCCTCAACCACTATACATTTGTGAAAAAG
TTGACAGAATTTACGTCAGCCGTAAAGGGTGTACAGAATTGAACATTCTA
CCAGAGATATTTCCATATCCCATGTCAGCAACCGTTTCCTCCGTTGACAC
CCTGCCAAGTAATCTACCTAAACGTCCAGAAAAATTACCTTTTGAACCCA
CAGAGGAAAATGTTCCAAAACTCAAACATTACCTAttagaacaattttcc
aaaactaCGTTCAACAGAGACGGACCATTTCCATCCATGGATACAAAACC
TGCCCACATACATATTCAACCTAATGCGAAGCCACATGTTCGTCATAACC
CCATCCCAGTGCCTTTCCACCTTAAGGAAGCAGTCAAGAAGAGTCTGGAC
GACGACATCAAGAGAGGCATTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037132XLOC_037132Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058946-proteinTCONS_00058946-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058946-exon-scaffold_314-1491911889:744575..745050TCONS_00058946-exon-scaffold_314-1491911889:744575..745050Clytia hemisphaericaexon
TCONS_00058946-exon-scaffold_314-1510915933:744575..745050TCONS_00058946-exon-scaffold_314-1510915933:744575..745050Clytia hemisphaericaexon
TCONS_00058946-exon-scaffold_314-1575043694:744575..745050TCONS_00058946-exon-scaffold_314-1575043694:744575..745050Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_314supercontigscaffold_314:744575..745050 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.664377	0.577954	2.14099	1.57909	4.56849	3.68156	3.51398	4.83339	1.74137	1.7888	0.566841	0.885399	0.176743	0.376461	0.379175	0.698681	1.19718	0.306719	0.683518	0.993157	0.513886	1.05856	0	0.415531	0	0.127323	0.364397	0.777789	0.884888	0.450781
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058946 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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