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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059491 ID=TCONS_00059491|Name=TCONS_00059491|organism=Clytia hemisphaerica|type=transcript|length=638bp
CTTTCAGAATAAAATGTTACCGAGTCCCTATAATACCCATTGTGGTACCA
AAACATTCAACTTTCTTGATCCGACACTGAAATACAGCAAAGGTCTTTGT
ATTATTGATTGTATTATTGGTCACATTTACAAGAATATGGCTTGTGTTGG
AGAAGAATTTCGCTCTCTCATAGATGATGGTTATGACTTTTGTTTGCTTA
AAGATCTTCCAACCTACTATCAAGTTCTGAATGAATTGTATGAAGAAGGC
GATGTTCTCGAAAACACTTGCTACCATACATGTCCGAATGAATGCGTCCG
AAAGTCGTACACCGTCCGAAAATCTACATACCGAATCGGAAGTCAATCTG
TATatgaagaaatgaagaaaacaatACCAAAGTTCAATAACAGAAGTATC
AACGagattgaaaaatatatcaggTCAGGTAGATAATAATCAtgtcggcg
atccaaaaaatatcagcaatctgattggttaaaaagagtataATATATCt
cgtattttacatgtacaaaatataaattgacgagaAGATGTTGTTGCATG
TAGAGATATAGTAGCAATCTAACGCCattttgctacaaaagtgccctgcg
cttttttataacacaaaaagtgcatttttgggtcaccg Run BLAST on NCBI protein sequence of Ion channel protein >TCONS_00059491-protein ID=TCONS_00059491-protein|Name=Ion channel protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
FQNKMLPSPYNTHCGTKTFNFLDPTLKYSKGLCIIDCIIGHIYKNMACVG
EEFRSLIDDGYDFCLLKDLPTYYQVLNELYEEGDVLENTCYHTCPNECVR
KSYTVRKSTYRIGSQSVYEEMKKTIPKFNNRSINEIEKYIRSGR Run BLAST on NCBI transcript from alignment at scaffold_329:14154..24179+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059491 ID=TCONS_00059491|Name=TCONS_00059491|organism=Clytia hemisphaerica|type=transcript|length=10026bp|location=Sequence derived from alignment at scaffold_329:14154..24179+ (Clytia hemisphaerica)
CTTTCAGAATAAAATGTTACCGAGTCCCTATAATACCCATTGTGGTACCA
AAACATTCAACTTTCTTGATCCGACACTGAAATACAGCAAAGGTCTTTGT
ATTATTGATTGTATTATTGGTCACATTTACAAGAATATGGCTTGTGTTGG
AGAAGAATTTCGCTCTCTCATAGATGATGGTTAGTATTTTTATCGGAATA
CCTTAAcgccttttttttctttattgataaTCATAAACACAgggtacact
acgaacatatactGCAAAATACTACTAAACattaatatagtccctccccc
tccgctagaaacttaagttatatcgccagaggtaatAGACTATGAAGAAA
GGGGTAAGGGGTAAGGGTAAAGCCTTTTGACGATTTTATATATTAACGAA
CTTCAACCTACCACTGCCCAATTTTCTAGATTAGGACCTCACTGGCTTTT
CATAGCAGTAAATATTGACTTACATCGGTATTAAATGTAGTACTTTAGtt
gattcatgatattcatgatgtaatcttttatacggaagcacacaaaataa
tcTGGAACTAGTGTTTgccactagtcttttgttattttgccactagttcc
gggttttctcgggtgcttccgtataaaagattacgtcatgaatatcatga
atagataagttgtttaaaaaaaatgctttttgcaaaattttggatgtaag
aaaaactacactttttttttataagaaccagtaaatttttgctgaggctc
ggctgttcttattttttggcactttgagccttcaattgttcttattttat
tcttattttttctaaggttaaaaacaagttttggctatttgctttactat
ttagaggattttagaaaccagtgattctttttgctataactctctaactt
cagcctctccactgttcttaaattgttcttattttggcatttttgagcct
cattgttcttattaaattgttcttatagaaaaaagttTATGATAAAACTT
CCATGCTTATATGTTTTAGGTTATGACTTTTGTTTGCTTAAAGATCTTCC
AACCTACTATCAAGTTCTGAGTAAGTACACGTTTCCTTTataaatccaaa
aattttgaagccttcggatgttcttaactttttgaggttTAAGCCTAAAT
ATGTTTGTAATATGTTTTTACtgtattttcgccatttttatagtattttt
gtcaatgaagccttaaaatgttcctaacttattcttaacattttcgccat
cgaagccttatgttcttataaagtttgttcttattaaaaaaaacgtgtat
tcttagTATTTCTAGATCATTCAAGGTTTGATTCGACATCTATTATTTgc
tatacgttttttataagaacaaaaaacacaaaaacataagccttcgatgg
ctaaaatattaagaatgtaAGAACTATTCGAGACTTTGAATTTAAGAACT
CTAAAAAAaacgatttcttaggaaattgtacAAAATACTCTAAAACAGAT
ATTTGAGAAtaatttcaagaacattttacgGCGCTTAAAactaagaataa
gttaagaatatcagaaggcttcaaaattttttgatgttattacacgtttt
tttttataaggaaccttaactttgctctgagcctggagttccttattttt
acagagaatttcagcctcaaagttccttatcgagttccttaNNNNNNNNN
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NNNNNNNNNNTGTTATGTACTTGAACAAAAACCCTAATCTATTATTCTAG
TCAGATTTAATCTTTCCTGACTAAATTAGCTGCTACATCCTGTAGCGTGT
GATACTACTCCTGTAGCATGTGACAGTACTCTCTGGTAAAGAGTtgttaa
ttcttttttattctttttctaGTGATAATATCTTGAAAATCCATGTTTCG
TTTTTCGACAACACGGTTGAGACAGAGGAAATGCAACCAGCCGTCTCTTG
GAATTCTCTCATAGGTAAatttataccttatcggccaaaacttagtcggc
cttaattttagttggcccaaatttttagctggccctaattttagtcacca
agccaaaatttagtcacttttgGCCGATAATGTAATCAATTTTCTTCGCT
ACGAATATTGTGTAGTTTACCTTTCAACAAATCAAATGATTATTTCAAAG
AGACCTCTGTGTTACAGACCCAGTGGGACCCCAACATCACTGAAAATTCt
agccaaaatttcgtccccatcCCCATTGAGGAAAATACCCCACAGTTTCA
GACCCACTGGGAAGTTGACTTTGTTTTTACGCCCATTTGAGATTCAATGA
AAAAACTGCACTGAAAACCATCCCCAGTAGACTTTTTGACCTGGAATCAA
TAGGATTTCTTTCTCTATTGAGATATAacaatacacccccttctcacagg
ccCACTAAGAAcctcttcccactggaaaaattgcccAAAATGTGTTCGTT
CTCACCTTTTATTGCGTCACACCCTGGTAAGGAAATATTTTAGTACCCTT
AGACTTCTTTCGGGTAATATTATGGTGCGAATAGTGGTTTACTTAATTGT
ATATTGGTCATTCGCATTTAGgaacacctccttctcacagacccggcaGG
ATTGTTTCAGCCCAAACTCGATTGGGATTGATATTAGCCAGAagattcag
tggggatagataaaatagcacaatattttgcagtgaggattcgctttcta
attattttcagcagggacaaaaattggggttcaattttccactggggaca
atattttggccaatttttccagtgggtctgtgagaagtgggtgtggtttt
gagttttgtttaagagggttttaggtttaaaactaaTAAAGATATTGAAA
TGAATATAAAACAttcatgaaaattatttaaacgattttaaaatgtcaaa
atgtaGACAAGCTTAGCTACTATAATGGGCCATTTCTCTAATGTTCCctt
atggaatttttttccaaaatctttctttcagcGACCATGGGTGGAGCTAT
CGGGCTTGGTCTCGGATTCAGTTTCATCACCGGATTCGAATTTCTATTCT
TCTTTNATATTTTCAGCCAAAACTCGATTGGGATTGATattagccagaaa
attcagcggGATGGataaaatagcacaatattttgcagtgaggatttgct
ttataattattttcagcGAGGACAAAAATTGGGGTtcaattttccactgg
ggacaatattttggccaatttttccagtgggtctgtgagaagtgggTGTA
GTTTTGGGTTTTGTTTAAGAAggttttaggtttaaaactagTAAAGATAT
TGAAATggatataaataaataaaaacattcgtAAATTATTTAAACGATTC
TGAAATGTCAAAATGAAGACATGTTTAGTTACTATCATGGGTCATTTCTA
TAATGTTCCTttatggaattttttcaaaatctttcttttcagCGACCATG
GGTGGAGCAATCGGGCTTGGTCTCGGATTCAGTTTCATCACCGGATTCGA
ATTtctattcttcttttttgacgtcattAAATTGGCATGGCAACGACGTA
AACAAAAACAAGTTCTTGGTATGTAAATTGACAAAGTATGCACAAAACGC
AACACAGGTGTTTATTTGGGTTTTGCAAGTCAATATATGTAGGTTATAAA
ACACGAAAAAGCTAAGGATTGGCAATCGACAGGGACTGGAACTTGAAAGT
GTTACCATCTTAAAAAAGCCCATCAGGATAAAGGGATTTCTCATCCATCA
TTGACATTTTTCTATATTGCAGTTATGTCATTTTTNNNNNNNNNNNNNNN
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aaatacaattttgtgaatacacacttaaaactttctactcaatcgcatgt
tcaaactcgatacttttattagggacaccctgtatactAATGGACCTTGA
ATTATTATGGAAAGAACCTATTACAACGACCTGGGGAACACATTCATAGA
TCATTTTCTAattcaattttgtattttttcaatgGATTTAGTTCTATCAC
TGAAATGCTACAAATGTATACATGGAGTGAATTGCTATAACAATATGACC
TTGGAGTGTTCCACGAAAGAGAACGCGTGTTTTACGCATTATGAAACAAG
GGAAGTTTATTCGTCACCAGACTACCAAGATCATATTGAGGTATATGTTC
ATCAAGACTGTGGTACTGAAAGCGAACAATTTTGCAGCGACGCCGAGATG
TGTGGACGTCGTGCAATCTCAGTTGGATTTGTCTCATGTAAGGTAAGGTT
GTTTCAGTGTATCACTATAAAATATGGTATATAAAATACACCCTGTATGG
TCGGACGCCTATTTCTGCAGGGTATGACACTTTGATTTTAGAAATCACAC
TGACCGCTTATTGGAATAcccacttctcacagacccgttgttttcaagtc
aggaaattcagtggggatgggaaaaatagcatattattttgcagtgagga
ttggcttGTTATTGGATTATTTTCGGTGGAGATaaaaattttcccaccgg
ggacgatatttcggccaatttttccagtgggaaggagtCCCACTCGacag
ggtctgtgagaaaggggtgttttgNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNAGGAGGCTTCAAAAAAGTTTAATGTT
ATTAAAAGGAGCGTATATAGACGACCTTGTAAAAATATACACTGTCAAGT
CCTGTCAAAGCGAATTGCAAAAAATAGTGATTTTACACATTTGATATCCA
TGTAGAAATGCAAGTTCTTCATAGAGAATATNTTTGATATCCATGTAGAA
ATGCAAGTTCTTCATAGAGAATACAGAATATGCACgccttttcttttaaa
agaataacttccataagaatatcagggtgagatttcagagttagaacaat
aggcctattgtttagaacaatagaaaaataagaataatgctcaccctcag
ccaaaaattactattcttataaaaagaaaagcgtgtattctatactgact
gaagactgcctgaaacggcacgaaactccgagtatcggaaaaaaaatttg
tctttATTCTTGGCTGATATACCACTCTACCGATGGTATAGAACACTTTC
TTGAATATATTCTATACATTCTTTGAACCCAAAAGTTCCCCTATTACTCT
CACTCATCACCTTCATAGATGAATTGTATGAAGAAGGCGATGTTCTCGAA
AACACTTGCTACCATACATGTCCGAATGAATGCGTCCGAAAGTCGTACAC
CGTCCGAAAATCTACATACCGAATCGGAAGTCAATCTGTATatgaagaaa
tgaagaaaacaatACCAAAGTTCAATAACAGAAGTATCAACGagattgaa
aaatatatcaggTCAGGTAGATAATAATCAtgtcggcgatccaaaaaata
tcagcaatctgattggttaaaaagagtataATATATCtcgtattttacat
gtacaaaatataaattgacgagaAGATGTTGTTGCATGTAGAGATATAGT
AGCAATCTAACGCCattttgctacaaaagtgccctgcgcttttttataac
acaaaaagtgcatttttgggtcaccg Coding sequence (CDS) from alignment at scaffold_329:14154..24179+ >TCONS_00059491 ID=TCONS_00059491|Name=TCONS_00059491|organism=Clytia hemisphaerica|type=CDS|length=1305bp|location=Sequence derived from alignment at scaffold_329:14154..24179+ (Clytia hemisphaerica)
TTTCAGAATAAAATGTTACCGAGTCCCTATAATACCCATTGTGGTACCAA
AACATTCAACTTTCTTGATCCGACACTGAAATACAGCAAAGGTCTTTGTA
TTATTGATTGTATTATTGGTCACATTTACAAGAATATGGCTTGTGTTGGA
GAAGAATTTCGCTCTCTCATAGATGATGGTTATGACTTTTGTTTGCTTAA
AGATCTTCCAACCTACTATCAAGTTCTGAATGAATTGTATGAAGAAGGCG
ATGTTCTCGAAAACACTTGCTACCATACATGTCCGAATGAATGCGTCCGA
AAGTCGTACACCGTCCGAAAATCTACATACCGAATCGGAAGTCAATCTGT
ATatgaagaaatgaagaaaacaatACCAAAGTTCAATAACAGAAGTATCA
ACGagattgaaaaatatatcaggTCAGGTAGATAATTTCAGAATAAAATG
TTACCGAGTCCCTATAATACCCATTGTGGTACCAAAACATTCAACTTTCT
TGATCCGACACTGAAATACAGCAAAGGTCTTTGTATTATTGATTGTATTA
TTGGTCACATTTACAAGAATATGGCTTGTGTTGGAGAAGAATTTCGCTCT
CTCATAGATGATGGTTATGACTTTTGTTTGCTTAAAGATCTTCCAACCTA
CTATCAAGTTCTGAATGAATTGTATGAAGAAGGCGATGTTCTCGAAAACA
CTTGCTACCATACATGTCCGAATGAATGCGTCCGAAAGTCGTACACCGTC
CGAAAATCTACATACCGAATCGGAAGTCAATCTGTATatgaagaaatgaa
gaaaacaatACCAAAGTTCAATAACAGAAGTATCAACGagattgaaaaat
atatcaggTCAGGTAGATAATTTCAGAATAAAATGTTACCGAGTCCCTAT
AATACCCATTGTGGTACCAAAACATTCAACTTTCTTGATCCGACACTGAA
ATACAGCAAAGGTCTTTGTATTATTGATTGTATTATTGGTCACATTTACA
AGAATATGGCTTGTGTTGGAGAAGAATTTCGCTCTCTCATAGATGATGGT
TATGACTTTTGTTTGCTTAAAGATCTTCCAACCTACTATCAAGTTCTGAA
TGAATTGTATGAAGAAGGCGATGTTCTCGAAAACACTTGCTACCATACAT
GTCCGAATGAATGCGTCCGAAAGTCGTACACCGTCCGAAAATCTACATAC
CGAATCGGAAGTCAATCTGTATatgaagaaatgaagaaaacaatACCAAA
GTTCAATAACAGAAGTATCAACGagattgaaaaatatatcaggTCAGGTA
GATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059491-exon-scaffold_329-1491911889:14154..14332 | TCONS_00059491-exon-scaffold_329-1491911889:14154..14332 | Clytia hemisphaerica | exon |
| TCONS_00059491-exon-scaffold_329-1510915933:14154..14332 | TCONS_00059491-exon-scaffold_329-1510915933:14154..14332 | Clytia hemisphaerica | exon |
| TCONS_00059491-exon-scaffold_329-1575043694:14154..14332 | TCONS_00059491-exon-scaffold_329-1575043694:14154..14332 | Clytia hemisphaerica | exon |
| TCONS_00059491-exon-scaffold_329-1491911889:15173..15223 | TCONS_00059491-exon-scaffold_329-1491911889:15173..15223 | Clytia hemisphaerica | exon |
| TCONS_00059491-exon-scaffold_329-1510915933:15173..15223 | TCONS_00059491-exon-scaffold_329-1510915933:15173..15223 | Clytia hemisphaerica | exon |
| TCONS_00059491-exon-scaffold_329-1575043694:15173..15223 | TCONS_00059491-exon-scaffold_329-1575043694:15173..15223 | Clytia hemisphaerica | exon |
| TCONS_00059491-exon-scaffold_329-1491911889:23772..24179 | TCONS_00059491-exon-scaffold_329-1491911889:23772..24179 | Clytia hemisphaerica | exon |
| TCONS_00059491-exon-scaffold_329-1510915933:23772..24179 | TCONS_00059491-exon-scaffold_329-1510915933:23772..24179 | Clytia hemisphaerica | exon |
| TCONS_00059491-exon-scaffold_329-1575043694:23772..24179 | TCONS_00059491-exon-scaffold_329-1575043694:23772..24179 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:14154..24179 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001873 | ENaC |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006814 | sodium ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005272 | sodium channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006814 |
sodium ion transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005272 |
sodium channel activity |
Blast
The following BLAST results are available for this feature:
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