TCONS_00059289 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059289
Unique NameTCONS_00059289
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length845

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059289 ID=TCONS_00059289|Name=TCONS_00059289|organism=Clytia hemisphaerica|type=transcript|length=845bp
cccgtcgtttttttctcgtaataccgatttaccgggggtaaaaaggccca
ataccgtcataccgtaaaagtgaaccccccccccttaaagtTATGGATGT
TCCTTAAGCACCAAAGTCAGATCTTACTGGCACATATTCAATCTGTTTCT
CGGAGCTACTCTCAAATGGCAAAGATCCAGTGTGTTTAAAGGTTAAAAAG
GAAAGGGAGATTCTGGAAGGTATCGCTAGTTTCATTGAGTGTGGGGAGCC
TTTAATCAATTTATTACGATGAATGTGAAAGATTAATATCAGATTCAGAG
GGGAAAATCACATGCAAAGGATGTAGATCAAAGACGTAACAAACAACCGA
CgacaaaacttttattttagcTGAAAGTCGTGATTCAAGACTGAAAATGA
ACTCGAAATCACTTCCCAACAACAACAAGACCTACAGGAATTCCTAAGAA
GGAGTAAAGAACAATTTGAAATCGAAACGGCATCCATGGAAAGTATAAAA
ATAATCACGAGAGAAAGAAACTAAGGTGACAGATGTCCCTCCAGATGGTA
ACTGTTTTTTCTATGCTCTGGCACTGGGAATGTATGGTACGATTAGGGAA
GCTTTTGAATTGAGGGATAAATCAGCAAATGAAGTGAATAAAAGGCGTCA
ATATTTTGAACAATTCATTTATGATGGCCAAACCATGGATGAAGTTGTTC
AATCTTTGGAGACTAATAAAACATGGGCCGATAACATGGCCATCCAAGCA
GCATCTGATGCTCTGTCAGTCACAATTGAGATTGTAAATTCGGACTATGT
TAGTTATGGCGGTAAAAAAATTGTCGTTCCTAGTACTGGTAAGAA
Run BLAST on NCBI

transcript from alignment at scaffold_324:27878..28722

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059289 ID=TCONS_00059289|Name=TCONS_00059289|organism=Clytia hemisphaerica|type=transcript|length=845bp|location=Sequence derived from alignment at scaffold_324:27878..28722 (Clytia hemisphaerica)
TTCTTACCAGTACTAGGAACGACAATTTTTTTACCGCCATAACTAACATA
GTCCGAATTTACAATCTCAATTGTGACTGACAGAGCATCAGATGCTGCTT
GGATGGCCATGTTATCGGCCCATGTTTTATTAGTCTCCAAAGATTGAACA
ACTTCATCCATGGTTTGGCCATCATAAATGAATTGTTCAAAATATTGACG
CCTTTTATTCACTTCATTTGCTGATTTATCCCTCAATTCAAAAGCTTCCC
TAATCGTACCATACATTCCCAGTGCCAGAGCATAGAAAAAACAGTTACCA
TCTGGAGGGACATCTGTCACCTTAGTTTCTTTCTCTCGTGATTATTTTTA
TACTTTCCATGGATGCCGTTTCGATTTCAAATTGTTCTTTACTCCTTCTT
AGGAATTCCTGTAGGTCTTGTTGTTGTTGGGAAGTGATTTCGAGTTCATT
TTCAGTCTTGAATCACGACTTTCAgctaaaataaaagttttgtcGTCGGT
TGTTTGTTACGTCTTTGATCTACATCCTTTGCATGTGATTTTCCCCTCTG
AATCTGATATTAATCTTTCACATTCATCGTAATAAATTGATTAAAGGCTC
CCCACACTCAATGAAACTAGCGATACCTTCCAGAATCTCCCTTTCCTTTT
TAACCTTTAAACACACTGGATCTTTGCCATTTGAGAGTAGCTCCGAGAAA
CAGATTGAATATGTGCCAGTAAGATCTGACTTTGGTGCTTAAGGAACATC
CATAactttaaggggggggggttcacttttacggtatgacggtattgggc
ctttttacccccggtaaatcggtattacgagaaaaaaacgacggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037333XLOC_037333Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059289-exon-scaffold_324-1491911889:27878..28722TCONS_00059289-exon-scaffold_324-1491911889:27878..28722Clytia hemisphaericaexon
TCONS_00059289-exon-scaffold_324-1510915933:27878..28722TCONS_00059289-exon-scaffold_324-1510915933:27878..28722Clytia hemisphaericaexon
TCONS_00059289-exon-scaffold_324-1575043694:27878..28722TCONS_00059289-exon-scaffold_324-1575043694:27878..28722Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_324supercontigscaffold_324:27878..28722 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.122619	0	0.227953	2.32381	0.894894	0.661127	1.08033	0	0.35908	0.339343	0.0777414	0.418666	0.258438	0.161596	0.49294	0.32246	0.374637	0.453421	0.447836	0.308469	0.19574	0	0.174593	0.866641	0.635135	0.13424	0	0	0.189535
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059289 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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