TCONS_00059367 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059367
Unique NameTCONS_00059367
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length636

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059367 ID=TCONS_00059367|Name=TCONS_00059367|organism=Clytia hemisphaerica|type=transcript|length=636bp
AGTCATAAACTGCCACGGCCAAAAAGCAATCTCAATGGAATTGGCAACAA
AGTTGTTCCTGTATACGGAAACAGGAACAAACTCAATCTTCGGAGACGTA
GAGCTATGGCCAGCACTCACAAAGACAGACTGGGAGAGTCTTGAGTCCAT
ACACACCTCCAacatcaaaaagtttcttggaCTCCCAGTTACAACACCCA
GCTGGGGAGTTCTAGCAGAGACAGGTATCTGGCCAATAAAGGCCACGATA
AATTACAAGAGGCTAATGGTTCTTCACAACATAGTGAACGGCAAAGAACG
CTTGGCAAAGACTATTGTTGAAAGCCAAATGACAAGAAAGTATGATGATG
AAAGCTGGTACAGTGCAACATGGAGGATAGCTGAGAAACTAAAGATACCA
GGGGAGCTGAGAGGATTGCCCAAATCAAATTGGAAAAGACAAGTAAAGGA
GGCAACAAGAAAGGAGATTCAAGAAGAAGTGAGAAGAGAAATAAAgacga
aaaagaaattgagattCCTGACAAACTTTGAGGAGAAGACCTATCTCAAC
GTCAACACTCAAGCAGATGCCAATCTACTCCTGAGAGTACGCTTGAATAT
GATCAAGGCAAAAGCAAATTATGGCGACAAAGGGAN
Run BLAST on NCBI

protein sequence of TCONS_00059367-protein

>TCONS_00059367-protein ID=TCONS_00059367-protein|Name=TCONS_00059367-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
VINCHGQKAISMELATKLFLYTETGTNSIFGDVELWPALTKTDWESLESI
HTSNIKKFLGLPVTTPSWGVLAETGIWPIKATINYKRLMVLHNIVNGKER
LAKTIVESQMTRKYDDESWYSATWRIAEKLKIPGELRGLPKSNWKRQVKE
ATRKEIQEEVRREIKTKKKLRFLTNFEEKTYLNVNTQADANLLLRVRLNM
IKAKANYGDKG
Run BLAST on NCBI

transcript from alignment at scaffold_326:35845..36480

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059367 ID=TCONS_00059367|Name=TCONS_00059367|organism=Clytia hemisphaerica|type=transcript|length=636bp|location=Sequence derived from alignment at scaffold_326:35845..36480 (Clytia hemisphaerica)
NTCCCTTTGTCGCCATAATTTGCTTTTGCCTTGATCATATTCAAGCGTAC
TCTCAGGAGTAGATTGGCATCTGCTTGAGTGTTGACGTTGAGATAGGTCT
TCTCCTCAAAGTTTGTCAGGaatctcaatttctttttcgtcTTTATTTCT
CTTCTCACTTCTTCTTGAATCTCCTTTCTTGTTGCCTCCTTTACTTGTCT
TTTCCAATTTGATTTGGGCAATCCTCTCAGCTCCCCTGGTATCTTTAGTT
TCTCAGCTATCCTCCATGTTGCACTGTACCAGCTTTCATCATCATACTTT
CTTGTCATTTGGCTTTCAACAATAGTCTTTGCCAAGCGTTCTTTGCCGTT
CACTATGTTGTGAAGAACCATTAGCCTCTTGTAATTTATCGTGGCCTTTA
TTGGCCAGATACCTGTCTCTGCTAGAACTCCCCAGCTGGGTGTTGTAACT
GGGAGtccaagaaactttttgatgtTGGAGGTGTGTATGGACTCAAGACT
CTCCCAGTCTGTCTTTGTGAGTGCTGGCCATAGCTCTACGTCTCCGAAGA
TTGAGTTTGTTCCTGTTTCCGTATACAGGAACAACTTTGTTGCCAATTCC
ATTGAGATTGCTTTTTGGCCGTGGCAGTTTATGACT

Coding sequence (CDS) from alignment at scaffold_326:35845..36480

>TCONS_00059367 ID=TCONS_00059367|Name=TCONS_00059367|organism=Clytia hemisphaerica|type=CDS|length=633bp|location=Sequence derived from alignment at scaffold_326:35845..36480 (Clytia hemisphaerica)
CCCTTTGTCGCCATAATTTGCTTTTGCCTTGATCATATTCAAGCGTACTC
TCAGGAGTAGATTGGCATCTGCTTGAGTGTTGACGTTGAGATAGGTCTTC
TCCTCAAAGTTTGTCAGGaatctcaatttctttttcgtcTTTATTTCTCT
TCTCACTTCTTCTTGAATCTCCTTTCTTGTTGCCTCCTTTACTTGTCTTT
TCCAATTTGATTTGGGCAATCCTCTCAGCTCCCCTGGTATCTTTAGTTTC
TCAGCTATCCTCCATGTTGCACTGTACCAGCTTTCATCATCATACTTTCT
TGTCATTTGGCTTTCAACAATAGTCTTTGCCAAGCGTTCTTTGCCGTTCA
CTATGTTGTGAAGAACCATTAGCCTCTTGTAATTTATCGTGGCCTTTATT
GGCCAGATACCTGTCTCTGCTAGAACTCCCCAGCTGGGTGTTGTAACTGG
GAGtccaagaaactttttgatgtTGGAGGTGTGTATGGACTCAAGACTCT
CCCAGTCTGTCTTTGTGAGTGCTGGCCATAGCTCTACGTCTCCGAAGATT
GAGTTTGTTCCTGTTTCCGTATACAGGAACAACTTTGTTGCCAATTCCAT
TGAGATTGCTTTTTGGCCGTGGCAGTTTATGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037373XLOC_037373Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059367-proteinTCONS_00059367-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059367-exon-scaffold_326-1491911889:35845..36480TCONS_00059367-exon-scaffold_326-1491911889:35845..36480Clytia hemisphaericaexon
TCONS_00059367-exon-scaffold_326-1510915933:35845..36480TCONS_00059367-exon-scaffold_326-1510915933:35845..36480Clytia hemisphaericaexon
TCONS_00059367-exon-scaffold_326-1575043694:35845..36480TCONS_00059367-exon-scaffold_326-1575043694:35845..36480Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_326supercontigscaffold_326:35845..36480 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.65579	4.61825	3.6689	3.77352	2.68911	2.56767	4.59327	3.60014	1.82039	3.1221	1.76772	1.99205	2.65238	4.8778	2.07588	2.73404	0.935586	2.23754	2.29638	3.14238	1.76731	2.23345	1.04791	1.03931	2.76538	1.6719	2.5064	2.18856	1.84438	2.8187
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059367 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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