TCONS_00059379 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059379
Unique NameTCONS_00059379
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length714

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059379 ID=TCONS_00059379|Name=TCONS_00059379|organism=Clytia hemisphaerica|type=transcript|length=714bp
cgggaaatcggggaaaccggttcaccacgtggataaaaaacgtacggaat
gaaacctgatagaaggttttcaaccagatttattcagataaagctataag
aggttcattacttgtggattttaaaagctacataagcaaaaacgaaagtt
tttgtgaaggaaagagtaatcgcaagacagaaggtttggttgtgttgatc
aggtaggtttttattctatccgaactaatgttaaaaaagaccaaagaggt
cctgactgtGTGAGTGTAGAGGGTCTTTTCAAAACTATGATACAGGAAAT
CAAGACATtgagtatttttcaaaaaatcaaaacttactGGTGAATTTGAG
TTACTGTCAATCATTTCAGGAGAATTCGCAGATGAAAAACTGTCAGNTTT
GAGTTACTGTCAATCATTTCAGGAGAATTCGCAGATGAAAAACTGTCAGG
ACTTCCATGACCTGAATCAAGGGATGAAAGAGAAGCAGTGCTTGGAGAAA
CACTGTTATTGTATGGGATATCTGAAAACAAATCATCCAAGAAATCCATG
GTCTCCATTTCAGCCATTATATAGAGAAATTATCTTATCAAAGCATGTAC
AACTGACCAAATAATAAATTTGTGaggataaaaatgaagaagttttgttg
tttgttttgatataaaAATTCCTTCCATTTATAATGGCGGAATGTTTTGA
ATGATGAAATCTTT
Run BLAST on NCBI

transcript from alignment at scaffold_326:314864..315577

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059379 ID=TCONS_00059379|Name=TCONS_00059379|organism=Clytia hemisphaerica|type=transcript|length=714bp|location=Sequence derived from alignment at scaffold_326:314864..315577 (Clytia hemisphaerica)
AAAGATTTCATCATTCAAAACATTCCGCCATTATAAATGGAAGGAATTtt
tatatcaaaacaaacaacaaaacttcttcatttttatcctCACAAATTTA
TTATTTGGTCAGTTGTACATGCTTTGATAAGATAATTTCTCTATATAATG
GCTGAAATGGAGACCATGGATTTCTTGGATGATTTGTTTTCAGATATCCC
ATACAATAACAGTGTTTCTCCAAGCACTGCTTCTCTTTCATCCCTTGATT
CAGGTCATGGAAGTCCTGACAGTTTTTCATCTGCGAATTCTCCTGAAATG
ATTGACAGTAACTCAAANCTGACAGTTTTTCATCTGCGAATTCTCCTGAA
ATGATTGACAGTAACTCAAATTCACCagtaagttttgattttttgaaaaa
tactcaATGTCTTGATTTCCTGTATCATAGTTTTGAAAAGACCCTCTACA
CTCACacagtcaggacctctttggtcttttttaacattagttcggataga
ataaaaacctacctgatcaacacaaccaaaccttctgtcttgcgattact
ctttccttcacaaaaactttcgtttttgcttatgtagcttttaaaatcca
caagtaatgaacctcttatagctttatctgaataaatctggttgaaaacc
ttctatcaggtttcattccgtacgttttttatccacgtggtgaaccggtt
tccccgatttcccg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037385XLOC_037385Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059379-exon-scaffold_326-1491911889:314864..315577TCONS_00059379-exon-scaffold_326-1491911889:314864..315577Clytia hemisphaericaexon
TCONS_00059379-exon-scaffold_326-1510915933:314864..315577TCONS_00059379-exon-scaffold_326-1510915933:314864..315577Clytia hemisphaericaexon
TCONS_00059379-exon-scaffold_326-1575043694:314864..315577TCONS_00059379-exon-scaffold_326-1575043694:314864..315577Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_326supercontigscaffold_326:314864..315577 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.86482	8.55432	6.59481	8.97814	12.679	12.9801	15.6302	18.2282	22.0966	29.134	34.3817	19.6356	45.7182	22.4281	23.7143	32.0877	16.2776	25.1968	39.4109	45.2549	18.0803	18.0668	10.9854	16.981	11.3696	18.4701	33.2129	24.6377	24.1073	15.9956
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059379 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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