TCONS_00059423 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059423
Unique NameTCONS_00059423
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1273

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059423 ID=TCONS_00059423|Name=TCONS_00059423|organism=Clytia hemisphaerica|type=transcript|length=1273bp
ccgttttcccgtcaaaatttttgctgaaccctggaatcccgaaaattgaa
aaaagtaataacaccgtcacaccggcttaTACTGGTTCAAATACCGCCAT
AATGACAagataaggccaaataccgtcaccgtctgattttaaaataccgt
tttcccgtcctttttttcgtcaaatcccgtaataccgtactaaaaaaaaa
gggccaatcccgtcacaccgtaaaagtacaaaccccccccgACAAAGCCT
AACAGCCTGTAAGTTGAGAGCTGTTTCGCAAATTGCGAATCAAGCTTCAA
AATAGAGGAAGAATATGCATTAGAAGGAAGAATATGCATTAGAAGGAAGA
ATATGCATTAGAAGGAAGAATATGCATTAGAAGGAAGAAAATGCATTAGA
AAGAAGAATATGCATTAGAAAGAAGAATATGCATTAGAAGGAAGAAAATG
AACCACAATATTGAGTtaatgaaacttttttatttgtcTATTATCCCAGC
TACTACAAACATTTGGGTTTTGTCCCCAAGGTTGCATACTTGCGTCAGAT
TTGGTTCCCTCACGACCATAAAAATGTAAAACTACATGATTACCCCCTTC
TTACAAGCTAAGAAAGAATACTTCATCttccaaaactttaaaaaccAGGG
GGTATGATCTTTGAAAGGTCGTATCGTATATAAAAGGGCTTTAAAACTTT
TCTAAAATATCGATTAACGCAGTTGGCTAAATTCAGAACATAATACACAA
AGATAGCAATTGATAAAATGATCAAGTTACTCTTAATCTTTGCCCTTCTT
GGCCTAACATACGGGCAATGCTCAAGATTTCCACACTGGCCCAGTGAATT
TCGTTGGTCATATGCAGGAAATCTTGGTAATGGCTGGAAATGCACAAGAA
TTTTGGAACCATCAGATCCACACACATGGGCGGACAATTACTTTTGCGAG
CGAACAGGACCAGCCTACATTGCAAGCGGTATGAGATGGAGTTACGCTGG
TCCTATCTCTGGCATGAGATGCACACGAATCATCGAGTTCAGTTCACCAG
CCAAACACACATGGCGAGATAACTATCTATGCGTTCCACATCACAGCCCC
TTCGTTTTCGAATGGTCGATGGCTGGACCAATCCCTGGAAAACATTGCAT
ACAATGGATTGAACCATCAGAACCGTTGGGTCATACATGGCGTGATAACT
ATTTGTGCGGTACCGTGTTCCCACGTGCACGACTCACCTACAATTAATTT
ATTAacaaaatgattgaaatttg
Run BLAST on NCBI

transcript from alignment at scaffold_327:431865..438313+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059423 ID=TCONS_00059423|Name=TCONS_00059423|organism=Clytia hemisphaerica|type=transcript|length=6449bp|location=Sequence derived from alignment at scaffold_327:431865..438313+ (Clytia hemisphaerica)
ccgttttcccgtcaaaatttttgctgaaccctggaatcccgaaaattgaa aaaagtaataacaccgtcacaccggcttaTACTGGTTCAAATACCGCCAT AATGACAagataaggccaaataccgtcaccgtctgattttaaaataccgt tttcccgtcctttttttcgtcaaatcccgtaataccgtactaaaaaaaaa gggccaatcccgtcacaccgtaaaagtacaaaccccccccgACAAAGCCT AACAGCCTGTAAGTTGAGAGCTGTTTCGCAAATTGCGAATCAAGCTTCAA AATAGAGGAAGAATATGCATTAGAAGGAAGAATATGCATTAGAAGGAAGA ATATGCATTAGAAGGAAGAATATGCATTAGAAGGAAGAAAATGCATTAGA AAGAAGAATATGCATTAGAAAGAAGAATATGCATTAGAAGGAAGAAAATG AACCACAATATTGAGTtaatgaaacttttttatttgtcTATTATCCCAGC TACTACAAACATTTGGGTTTTGTCCCCAAGGTTGCATACTTGCGTCAGAT TTGGTTCCCTCACGACCATAAAAATGTAAAACTACATGATTACCCCCTTC TTACAAGCTAAGAAAGAATACTTCATCttccaaaactttaaaaaccAGGG GGTATGATCTTTGAAAGGTCGTATCGTATATAAAAGGGCTTTAAAACTTT TCTAAAATATCGATTAACGCAGTTGGCTAAATTCAGAACATAATACACAA AGATAGCAATTGATAAAATGATCAAGTTACTCTTAATCTTTGCCCTTCTT GGCCTAACATACGGGCAATGCTCAAGATTTCCACACTGGCCCAGTGAATT TCGTTGGTCATATGCAGGAAATCTTGGTAATGGCTGGAAATGCACAAGAA TTTTGGAACCATCAGATCCACACACATGGGCGGACAATTACTTTTGCGAG CGAACAGGACCAGCCTACATTGCAAGCGGTATGAGATGGAGTTACGCTGG TAAGTAATGGAACGTTTTtcaacattgaaacaacgtttttcgGTTCTCTG CTAAGTTTCCTGTTAGCAacagaaaatattctttaaaaaattgataatta ttTCTTCATCTCACAACAGGTCCTATCTCTGGCATGAGATGCACACGAAT CATCGAGTTCAGTTCACCAGCCAAACACACATGGCGAGATAACTATCTAT GCGTTCCACATCACAGCCCCTTCATTTTTGAATGGTCGATGGCTGGACCA ATCCCTGGAAAATATTGTATACAATGGATTGAACCATCAGAACCGCTGGG TCATACATGGCGTGATAACTTTTTGTGCGCTACCGTGTTCCCACGTGCAC GACTCACCTACAATTAATTTATTAACaatgattgaaatttgaaatagacG ATTAGATTACAATAGTTTGTAGACGATGACAATAAATGCAAAATCTTAAT TTGACTTTTCAATACTCCAATCTTTAATTTCTACTCCAATTCTTTTTGGA AAATACTCATCTCGATGAGAAAAATCTGTCAGAAACTTTTCTATATTATA AAGTTGAAAAATGGTTCAGAATGCACAATAGTAGaccttttttacaaatt aactCACGATCAACGCTTATACCTAGTTTTCAAAATGTCGCTTTGGTAAT TGATTCTCTGAAGAGTTCTTAAGAAGTTTACTCTTTTAATCAaagcaggg atatgttatagcggagctggataaaggacgagaattccttggcggattgc ttctttgtcttttatattgtaaactgttcataatagaaatccatctctgt ccccttcagtggtctgtttttataagaaaaattaagcagacaaagtattc atgcagtactttaatcgtagaaattttagcgagattaattttagcgcata ttagcgagtcaggaaaatcttgattttttttggatttattttagcgaatc aagatttcaaaaaattttgcgtggataaattttagcgaatactcgtctga caaaaatttcgcgtggattaattttagcgaggggaatgattttgaggaaa aaataatgtgttttaatacaaaaatcaaTATAGTCACATGTCTTTGTAAC ACAATTCTTGACTAAGAacagaaaaactttgaaatttacGCCCATATtac tagtttttgaaaaaaatatgaaaatgataacaaaatgataaaaaatgaaa gaaaaaacatactggatttattttagcgaatcagcTTTNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNTCAATTCGGTgcgttttagcgagatttatttta gcgaaaatagggaaaactcgctaaaacgctaaaattagtctcgctaaaat ttctacgattaaagtacgtttgcacatattttgctatgatgttcccgctt taaaataatatttgcagaAGATACCTTAAAGGCTTCCTTgtaattttatc agcgtgtgttatgaatttgatcTGGCTTTAATGattcctctttaaaaatt tcggatgtaaatattttgacaaatattgtttcaattgacttgaaattttt tccatagtCAGATTTGCTATCTGAAAacatcagttagaaagtgaggcacc cgcggtgtagcgcggtatttcaaatggaAAAatgctatttataatcttac agaagaaatttcttataactttactaatgaaaacaatgtttttcattttt aatttcgcatagcgaaagtattacaatcgGTTTTCTGCGGTCGTAGTGCT AAAAATCAACACTCAGCACTCGTTCTTCGTGTTCACAGTGCTCCACATGT TCTTCTAGAACATTCTAGAATATTCTAAAGATGGACTCACGCACAAAGAT GAATAACAGCGTTTCTTTAATGGTTCTACAAGGTGAATGTAACCAAGGGT GTGTAAACATTCCTTGTGAAagctttttaatggctgcttgaagTCAACAC TTTTTGTACACTTTTCTCCTGCTGTGTATATATTTTTAGTATGTTTTCTG GTAacttgtagagtatttaaagaggtttgtCATTCGTTTACTacttagta ttttatgtttgtgtagttattGAATGCACCAATAAGCTTTTACAGTGCAC AGTAGagttttttggctatttttttaCCACATCCCGTACAACAACTGACA ACAGAACCCTTCAATACAAAAACACaggtataatattttttaacaattaG TCATAGGTGTTGATAGTGAGATGAATAGAGCTTTTCGTCGTTGATCACAT TCATATGGAAGCAgccattttttatacaaatcaTAGATTGCCGAAATAGA TTTGCATGGTTTTGCATGTTTTGCATATATAAATgtagaaaatgacgtca ttttcaaaatgatttatcttttttcaatttatgaTTCACCTGTACCTGTA CCACAAGCGCTGTTTCGTGGAAATAGGGTTTTCTGTTGTTATATAGacca caaactttttgatttttggtaatatTCGATCGTGTGTTCGATTGCATTGC GTTGTTCAAGTAAaacgtttgattggtttgattgattgtaaattaccttc gattatgtttgattacgattatgttctaTTGGGAAGTTTGATTGGGATTA AATTAGATTGGATCACttctttagagcttttttagcgtgGACGGCCAAGC GCGTAAGTATATACGGTACGATAGTGAATAAAATCGAATACAATTAAATC AATCGAGTGTAATCGAACATAATCAGTACAATCGAACGNGTGAATAAAAT CGaatataattaaatcaatcgaGTGTAATCGAACATAATCTGTAATCAGt acaatcgaacggcaaatccttggtgatattcgattgcgattatTATTCTa ttgcattcaattgattcggcgttcgattcattcgattgacaccgtctggc catAACATGTGAAGGTGGAAATCAATCTACAGTATATNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNATCTATTGCTAGTCcggatgtcctgttgaata attaaaaactctagcACTAAAACAATGACCACATATAGCACATAATTATT CTGAttatgcatttatttttcttacagtAATTATTGTTTTGAGGCTGGtc tttttaaattattcaacatccaaaagcccattaactgcctaaattgctag agacgctccgagcgtctctatgtcataaatttcacgttctcctttcataa tttacaaaaggagcatgcttttcactttcgaattctgatttcgtctattc agaaaactgtgataatatcgtaaaaactttttttttaaaccagaggatga ttcctttttaaactttggtttaacttatGAGGAGCGTGCagctaaataca aaaggaaaataaaagaaacatgtagagttaattactttaaaccttggtct gaacacgaccGAAATGTTCAAGGGAGTGTAATAATTACCTTTATTCTTAA TAAGAGACAGAGGTGAAGGCTGTGCACTTCTTTGTTCCCGTATTTTCAAG CAACTTTCAAGCAACAGAGTGAATACACCCAAGGAAGTCAACAATTTGGA GTAAAGAGGTCGGATGATTATTCTGACAAAACAAAGAAGTAAAGGCGAAT TTCGCTTTTAAAAATCACTCGAGTTTACTggctttttcttcttcatttct ttCCTTAGAATTCTCTCTATGCTAAATAAATGGCCATCATCCTTATAATC ATGCCATACTTAAAGACTAATCACTATCCCAGAACTAAACAATGTCCAAG CCGAGAAGAATCGGTTTTATATTTAGTCTCCAACCTAATACTCTCCAGTA AAAATTGTTCTCGGACAAAGATACTGGTATAGTTTATGAAAGgttgcaaa aacaaaaatgaaaaactgaaaaatcttATACCTGGTTTTCAACAATGATA TGAGAAGGACAATGATGACCGAAATGTTAGAAACATGAAAGATTACTCAA AATTCAGGGGTAAAGTTCTTTCTCGAAGGGTTAAATTCTAATCACCATTT ACTATAATCTCCCAAGTTTTTTCAGGGAAGAGAGGAGAATTGTTCATAAG AAGTCAGGGATAATAACTCTTAGGAGGGCTTGGAGCAGTTTAGATATGTT TCAGTTTGGGTCAAGCGCAACAAAATAACTGACTGTTAGCTTCCTGAAAG ATTAGTTTCTGTTGCTAAATACTTCCCCCTTATCCCTAATTAAACACTTT CACTCAAGCATGTAGTTTTTGTAATTAATGTTATTAAAAGATTGGCTCAT CTCCAAAGGAGCTAATAGTTATTCTTTTATCATTCCATGCGTTTTCAAAA GGAAATCCAAAAGAACCCCGAGATTGCCCCCTCATCATATGCAAAATAAG AATATATTCAACTAGAAAATCAGGGGGTTTGTCTTACAATGTCAATATTG TATATAAAAGGTCCTTACAAACTCAAAAAGCATCAGGCAATAATCAAAAG ACAACCTTCAAAGAAGATAATTCATTCAAAAAGCAACACGGTTGACAAAA TGATCAAGTTACTTTTAATCTTTGGCCTTTTTGGTCTAACATACGGGCAA TGCCCAAGATATCCTCACTGGCCACGTGAATTTCGTTGGTCATATGCAGG ACATCTTGGTAATGGCTGGAGATGCACAAGAATTTTGGAACCATCAGATC CATACACATGGGCGGACAATTACTTTTGCGAGCGAACAGGACCAGCCTAC ATTGCAAGTGGTATGAGATGGAGTTACGCTGGTAAGTGATGTAACGTTTT TCATCGGTGAACATTTTTCGGACCTCACTTTAGTTTCTTTGGAATCTTAG ACTTTCATTAACTTCCTGTTAGCAACAAAAACCATTCTGtggaaaattga taattatttCTTCATTTCACAACAGGTCCAATCTCTGGCATGAGATGTAC ACGAATCATCGAGTTCAGTTCACCAGCAAAACACACATGGCGAGATAACT ATCTATGCGTTCCACATCACAGCCCCTTCGTTTTCGAATGGTCGATGGCT GGACCAATCCCTGGAAAACATTGCATACAATGGATTGAACCATCAGAACC GTTGGGTCATACATGGCGTGATAACTATTTGTGCGGTACCGTGTTCCCAC GTGCACGACTCACCTACAATTAATTTATTAacaaaatgattgaaatttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037406XLOC_037406Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059423-exon-scaffold_327-1491911889:431865..432863TCONS_00059423-exon-scaffold_327-1491911889:431865..432863Clytia hemisphaericaexon
TCONS_00059423-exon-scaffold_327-1510915933:431865..432863TCONS_00059423-exon-scaffold_327-1510915933:431865..432863Clytia hemisphaericaexon
TCONS_00059423-exon-scaffold_327-1575043694:431865..432863TCONS_00059423-exon-scaffold_327-1575043694:431865..432863Clytia hemisphaericaexon
TCONS_00059423-exon-scaffold_327-1491911889:432984..433044TCONS_00059423-exon-scaffold_327-1491911889:432984..433044Clytia hemisphaericaexon
TCONS_00059423-exon-scaffold_327-1510915933:432984..433044TCONS_00059423-exon-scaffold_327-1510915933:432984..433044Clytia hemisphaericaexon
TCONS_00059423-exon-scaffold_327-1575043694:432984..433044TCONS_00059423-exon-scaffold_327-1575043694:432984..433044Clytia hemisphaericaexon
TCONS_00059423-exon-scaffold_327-1491911889:438101..438313TCONS_00059423-exon-scaffold_327-1491911889:438101..438313Clytia hemisphaericaexon
TCONS_00059423-exon-scaffold_327-1510915933:438101..438313TCONS_00059423-exon-scaffold_327-1510915933:438101..438313Clytia hemisphaericaexon
TCONS_00059423-exon-scaffold_327-1575043694:438101..438313TCONS_00059423-exon-scaffold_327-1575043694:438101..438313Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_327supercontigscaffold_327:431865..438313 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (7.55757 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.340117 0.652971 0 0 0.597205 0 0 0.372211 7.55757 3.41407 1.17835 2.43614 2.24128 1.1946 3.15601 3.90425 0.344794 0 0.0213655 0 0 0 0 0.132609 0 0.107505
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059423 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600700800900100011001200Sequence
Match NameE-valueIdentityDescription
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