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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061431 ID=TCONS_00061431|Name=TCONS_00061431|organism=Clytia hemisphaerica|type=transcript|length=1649bpRun BLAST on NCBI protein sequence of TCONS_00061431-protein >TCONS_00061431-protein ID=TCONS_00061431-protein|Name=TCONS_00061431-protein|organism=Clytia hemisphaerica|type=polypeptide|length=491bp MEKLSMFCCVLFALFLRCGVSLNSYSGAHKPPMFGDYEAQRHWMEITYNLRun BLAST on NCBI transcript from alignment at scaffold_358:346464..394108- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061431 ID=TCONS_00061431|Name=TCONS_00061431|organism=Clytia hemisphaerica|type=transcript|length=47645bp|location=Sequence derived from alignment at scaffold_358:346464..394108- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_358:346464..394108- >TCONS_00061431 ID=TCONS_00061431|Name=TCONS_00061431|organism=Clytia hemisphaerica|type=CDS|length=22140bp|location=Sequence derived from alignment at scaffold_358:346464..394108- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061431 vs. Swiss-Prot (Human)
Match: ALG6 (Dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase OS=Homo sapiens GN=ALG6 PE=1 SV=2) HSP 1 Score: 370.163 bits (949), Expect = 3.937e-121 Identity = 222/489 (45.40%), Postives = 309/489 (63.19%), Query Frame = 1
Query: 112 VLFALFLRCGVSLNSYSGAHKPPMFGDYEAQRHWMEITYNLPINEWYNQTKDNDLMYWGLDYPPLTAYHSKLCGIVANLMNPDWVALNTSRGYESYNHKLFMRATVLXXXXXXXXXXXXXXXGITLKKYSSYEQVLLTTMLLSYPGLILIDHGHFQYNCISLGFTLFSTVFMMRQYHCISSMFFVLALNYKQMELYHSFPFFFYLLSVSWKQKTWLQSVVKLGGIGSTVIATFIISWLPFLKSLESAQLVVQRLFPFNRGLFEDKXXXXXXXXXXXXKIKNLISQPQMVQLCL--LSTVVACLPSCFDLLRNGTRKKFLYSMINCSLAFFLFSYQVHEKSILIPATSVCLILWMNPMAASWFLVISTFSMY----------PLLVR---------------DGQSTSYFSLVILYVMLASFLCKSQSYSRWTKLVVSLSLTGCAALHLAFSLVDAPPSLPDLYPLLFSVYSCAHFVLFWLYF-LYIQWN 1494
VL L +R VSLNSYSGA KPPMFGDYEAQRHW EIT+NLP+ +WY + DN+L YWGLDYPPLTAYHS LC VA +NPDW+AL+TSRGYES HKLFMR TVL+AD+ IYI AV+ + LK+ S+ +++ +L YPGLILID+GHFQYN +SLGF L+ + + + S+ F LA+NYKQMELYH+ PFF +LL +K+ + V L + V+A+F++ WLPF E V++RLFP +RGLFEDKVAN+WC+ +V +KIK+++ P+ +QL + ST ++ LP+C L+ + K F +++++C+L+FFLFS+QVHEKSIL+ + VCL+L P ++WFL++STFSM P +V + S L + + +L SR + + +S+ L L +D P LPDL+ +L SC +F+ F +YF + I W+
Sbjct: 11 VLIGLTVRWTVSLNSYSGAGKPPMFGDYEAQRHWQEITFNLPVKQWYFNSSDNNLQYWGLDYPPLTAYHSLLCAYVAKFINPDWIALHTSRGYESQAHKLFMRTTVLIADLLIYIPAVVLYC-CCLKEISTKKKIANALCILLYPGLILIDYGHFQYNSVSLGFALWGVLGISCDCDLLGSLAFCLAINYKQMELYHALPFFCFLLGKCFKKGLKGKGFVLLVKLACIVVASFVLCWLPFFTEREQTLQVLRRLFPVDRGLFEDKVANIWCSFNVFLKIKDIL--PRHIQLIMSFCSTFLSLLPACIKLILQPSSKGFKFTLVSCALSFFLFSFQVHEKSILLVSLPVCLVLSEIPFMSTWFLLVSTFSMLPLLLKDELLMPSVVTTMAFFIACVTSFSIFEKTSEEELQLKSFSISVRKYLPCFTFLSRIIQYLFLISVITMVLLTLMTVTLDPPQKLPDLFSVLVCFVSCLNFLFFLVYFNIIIMWD 496 The following BLAST results are available for this feature:
BLAST of TCONS_00061431 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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