TCONS_00061994 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061994
Unique NameTCONS_00061994
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length313

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061994 ID=TCONS_00061994|Name=TCONS_00061994|organism=Clytia hemisphaerica|type=transcript|length=313bp
GACATTATAAAAATAACTagtgtacaaaatataaaataaaataataatct
gATAATAATGAAGACTAAAATTCTTTATTAATGGCTTTTGACGTGTTCTC
GGATCAATTTGTACGATGGTGGTCCTCGTTTCTCCAAAAATATCTTGACA
TTTTCGAGATTTCGAACTCGTTCGTTTAGAGCTTTGACCAATGGATAGTT
GTCTATGAAATTCTTGAATTCTGGAAGAGTGTTTTCTTCAAGACttaaGG
TTTCCAGGGATATGACCAAATGCAGGTCTGCGATTGAGAGCTGAAAGTAG
AAAGAGCAATTTC
Run BLAST on NCBI

transcript from alignment at scaffold_361:533065..533941-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061994 ID=TCONS_00061994|Name=TCONS_00061994|organism=Clytia hemisphaerica|type=transcript|length=877bp|location=Sequence derived from alignment at scaffold_361:533065..533941- (Clytia hemisphaerica)
GACATTATAAAAATAACTAGTGTACAAAATATAAAATAAAATAATAATCT
GATAATAATGAAGACTAAAATTCTTTATTAATGGCTTTTGACGTGTTCTC
GGATCAATTTGTACGATGGTGGTCCTCGTTTCTCCAAAAATATCTTGACA
TTTTCGAGATTTCGAACTCGTTCGTTTAGAGCTTTGACCAATGGATAGTT
GTCTATGAAATTCTTGAATTCTGGAAGAGTGTTTTCTTCAAGACTTAAGC
TAAGGCTACACTGATAGTTTTTTCAGGCGGCTGCAATGCAATTAGCGTTG
CGTTGCAAACGCGCGAGAAATTGCAAAATGTAGCACGTCAATTTTTTCTG
CAATTCCTCTGCAACGCAATAAAAATATTGCAGAACAAATTGCAAGTGTC
TGCAACAAAATCAGTTTGAACTGATTTTGTTGCAGAAGAATCTGCAATTT
TTTTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGCAATGCAACAATTGCATTGCAGCCGCCTGAAAAAACTATCAGTGTAG
CCTTAGCTTTAGGGTTTCCAGGGATATGACCAAATGCAGGTCTGCGATTG
AGAGCTGAAAGTAGAAAGAGCAATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038861XLOC_038861Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061994-exon-scaffold_361-1575043694:533694..533941TCONS_00061994-exon-scaffold_361-1575043694:533694..533941Clytia hemisphaericaexon
TCONS_00061994-exon-scaffold_361-1575043694:533065..533129TCONS_00061994-exon-scaffold_361-1575043694:533065..533129Clytia hemisphaericaexon
TCONS_00061994-exon-scaffold_361-1510915933:533694..533941TCONS_00061994-exon-scaffold_361-1510915933:533694..533941Clytia hemisphaericaexon
TCONS_00061994-exon-scaffold_361-1510915933:533065..533129TCONS_00061994-exon-scaffold_361-1510915933:533065..533129Clytia hemisphaericaexon
TCONS_00061994-exon-scaffold_361-1491911889:533694..533941TCONS_00061994-exon-scaffold_361-1491911889:533694..533941Clytia hemisphaericaexon
TCONS_00061994-exon-scaffold_361-1491911889:533065..533129TCONS_00061994-exon-scaffold_361-1491911889:533065..533129Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:533065..533941 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.386132	0	9.65786	7.99519	8.33051	23.3968	15.8059	49.8352	80.5036	6.13235	6.80425	4.71085	79.0084	174.564	0	0.787206	1.45009	39.8321	0	0	0	0.355492	0	8.16948	0	0	5.29923	1.92824
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061994 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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