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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059800 ID=TCONS_00059800|Name=TCONS_00059800|organism=Clytia hemisphaerica|type=transcript|length=1027bp
GGGCAATTAGGTTTCAAAACCAGTATAATTTCATAGAAACTAGTTTTTGT
GAATTTCCCAGTAAGGTGTATTGTGGGCGTTCCAGGGTATAAAATCAAgg
atattttgtttttaaaattcaaaactgaACTCAGATAAatcataaagaag
aaaaaaaaagatcagcGAGTTAACTGGAACAAGATGCCACTAAGCAAGGC
TGATCAAATTGCCATCCAAAAAATTGCAACTTGTTTACAAACTATAGGAG
ATGATCTCAACAATcgaatgaaaagaagaaattctCCAATCAAAACTGTT
ATCTCCACAAGTACACGAAGACGTTCTGGTCAAAGCTCTACAAAATTGTT
ATGGAGATAACGataaacattatttttttacatCGAAAACTAATACCTTA
AAAACATTTTGTGTAAATAATAGGAAATTGTACTCGTTTTAGAATATCCG
ataatttataaatttattttgtgacatactttaatttttagattttttac
acATGgattaaaaactgaaaaaaaaacattatttacatTGTTTGCCTTTA
TGTTATACATTCaagatatttaaaaattatgtcATCATTTAACCTCCTCC
CCGTGTATCTCAGGCTTTATGTATGATATTTATGGAAGCCAGAGAATTAT
CTAGTGCTATCAGaaacataaaaaagctgataatacgcagggcaCGAGGT
TAACCATCATATACATTACACACTTTACCCAACCCTCTCGCCATATTGAA
CTAATAGTCGTATAATATTCAGTTGCGAtagtattttaaaaattttgaaa
ttccttataaaaaagattttcttaacaGTCAAAGAAAGATATTTCACTTC
TGGGTGACCCACAAAAAAGCATACTGGTTTCATGACCAAAACCTAAAATG
TGTCCGAGATAATGTAATGTGATTTTTGATACTTTCTTCTttacaatgaa
aaatgaatttgataaTTATTAGCCATCATCACCTTACACTTTTTTGTGGA
TCACCATCCAATATACCTTTTTGACCG Run BLAST on NCBI transcript from alignment at scaffold_331:487517..490207+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059800 ID=TCONS_00059800|Name=TCONS_00059800|organism=Clytia hemisphaerica|type=transcript|length=2691bp|location=Sequence derived from alignment at scaffold_331:487517..490207+ (Clytia hemisphaerica)
GGGCAATTAGGTTTCAAAACCAGTATAATTTCATAGAAACTAGTTTTTGT
GAATTTCCCAGTAAGGTGTATTGTGGGCGTTCCAGGGTATAAAATCAAgg
atattttgtttttaaaattcaaaactgaACTCAGATAAatcataaagaag
aaaaaaaaagatcagcGAGTTAACTGGTAAGCATCAGATTTTCGTTAGGG
AAGTTCAGAGATACAATTTGAACTCAGAATTTGGTGAAAGAATTTAGTCA
AACTTTTAATTTGTTAATATCGTTGTTTCCACCTTTTCCACCAAaccttt
gaaaaagaactttaaTATATAATTTTGGGTGATTCCCTTTTCAATTAAGA
TATAATTTTTGGCAGTTTTGTAGATATTACATATTACTATGttaaattct
tttataaaaataatatgaCTTGATTTTTTTAGGGACCAGATGCCACTAAG
CAATGCTGATCAAATTGCCATCCAAAAAATTGCAACTTGTTTACAAACTA
TAGGAGATGATCTCAACAATcgaatgaaaagaagaaattctCCAATCAAA
ACTGTTATCTCCACAAGTACACGAAGACGTTCTGGTCAAAGCTCTACAAA
ATTGTTATGGAGATAACGATAAACATTATTTTTTTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CTATTGttcatttataaattttatttatcattattttcaaattttgaaaa
attgattttaccacctgagaaatattctttcaaaacCTCGTTAAATCATC
TATAAAACCTGAGTAattaatttggaaaaaatcactgaaaataaatttct
acgaaatttttcatatttgtccTTTACATAACGTGAATCTGGAATTAACT
GAGAATAAGCagaatttcccttgttttttgcttaaaaaaccttGGAGAAA
TCCAAAATTCATTCGAATTTCAAATGCTAATATAACAATTTAATGTTGCT
GATTTCTGAGTAGAGGGTCTAGACCCTCTTTATCAAATCCACGGTTAAAG
CAACTTAACTGGGTCTTGATATTTATTTTGTTGCGAAGTAGCGGTCATGA
GAAAGTTCTCCATTAAATTCTGTAATCTATTTTCTTATGAGCACGTACAA
AATATTCAAAGGTCATCTTTCAATGACGTTTGATTAAGAATACAACTCAG
TATCAGTATATGTAAATATATTTGACCTAGCCTCCTGAACAAGAAGTTCA
TTAATACTCTAGAAATAAAAACAGTAGTAGATTTTGACTCAACTTTGGAG
AGTGTTATTTACCATNtttcctaggctagatcatgagatatttgagtttg
aaattttgctgactcagcgtttttcgcggttttgtaGATATTACTAtgtt
aaattttttaataaaaataatttgaatcgaTTTTTTTTAGGAACAAGATG
CCACTAAGCAAGGCTGATCAAATTGCCATCCAAAAAATTGCAACTTGTTT
ACAAACTATAGGAGATGATCTCAACAATcgaatgaaaagaagaaattctC
CAATCAAAACTGTTATCTCCACAAGTACACGAAGACGTTCTGGTCAAAGC
TCTACAAAATTGTTATGGAGATAACGataaacattatttttttacatCGA
AAACTAATACCTTAAAAACATTTTGTGTAAATAATAGGAAATTGTACTCG
TTTTAGAATATCCGataatttataaatttattttgtgacatactttaatt
tttagattttttacacATGgattaaaaactgaaaaaaaaacattatttac
atTGTTTGCCTTTATGTTATACATTCaagatatttaaaaattatgtcATC
ATTTAACCTCCTCCCCGTGTATCTCAGGCTTTATGTATGATATTTATGGA
AGCCAGAGAATTATCTAGTGCTATCAGaaacataaaaaagctgataatac
gcagggcaCGAGGTTAACCATCATATACATTACACACTTTACCCAACCCT
CTCGCCATATTGAACTAATAGTCGTATAATATTCAGTTGCGAtagtattt
taaaaattttgaaattccttataaaaaagattttcttaacaGTCAAAGAA
AGATATTTCACTTCTGGGTGACCCACAAAAAAGCATACTGGTTTCATGAC
CAAAACCTAAAATGTGTCCGAGATAATGTAATGTGATTTTTGATACTTTC
TTCTttacaatgaaaaatgaatttgataaTTATTAGCCATCATCACCTTA
CACTTTTTTGTGGATCACCATCCAATATACCTTTTTGACCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059800-exon-scaffold_331-1491911889:487517..487692 | TCONS_00059800-exon-scaffold_331-1491911889:487517..487692 | Clytia hemisphaerica | exon |
| TCONS_00059800-exon-scaffold_331-1510915933:487517..487692 | TCONS_00059800-exon-scaffold_331-1510915933:487517..487692 | Clytia hemisphaerica | exon |
| TCONS_00059800-exon-scaffold_331-1575043694:487517..487692 | TCONS_00059800-exon-scaffold_331-1575043694:487517..487692 | Clytia hemisphaerica | exon |
| TCONS_00059800-exon-scaffold_331-1491911889:489357..490207 | TCONS_00059800-exon-scaffold_331-1491911889:489357..490207 | Clytia hemisphaerica | exon |
| TCONS_00059800-exon-scaffold_331-1510915933:489357..490207 | TCONS_00059800-exon-scaffold_331-1510915933:489357..490207 | Clytia hemisphaerica | exon |
| TCONS_00059800-exon-scaffold_331-1575043694:489357..490207 | TCONS_00059800-exon-scaffold_331-1575043694:489357..490207 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:487517..490207 + |
Blast
The following BLAST results are available for this feature:
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