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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060021 ID=TCONS_00060021|Name=TCONS_00060021|organism=Clytia hemisphaerica|type=transcript|length=3092bp GTCTTTTGaaatcatagaaaaataaaacaacaaattccACAATGTCAGCA TCAATTTTCACCCCTACAAATCAAATTCGGTTGACAAATATTGCTGTTGT TAGACAAAAGAAGCAtggaaaaagatttgaaatagCTTGCTACAAAAATA AAGTCATATCGTGGCGTAAAGGAGCTGAAAAGGACCTTGACGAGGTGGTT CAAACACAACAAATTTTCACCAATGTTTCCAAAGGACAGCTAGCAAAAAA AGAAGACCTGAAGAAAGCTTTTGGAACAGATGATGATAAAGAAATTCTTT TACAGATTTTAGCAAAAGGTGAATTACAAGTTTCAGACAAGGAACGAACT CAACAACTAGAAACCATGTTTCGTGACATTGCATCAATCGTATCGGACAA GTGTGTAAATCCGGACACCAAACGCCCTTATACTGTTGGTGTCATAGAAA GTGCTATGAAAGAAATTCATTATTCTGTCAAACCAACCAAAAGCACAAAA CAACAGGCGCTAGAAGTTATTCGACAGCTTAAAGAAACTATTCCCATAGA GAAAGCACAGATGAGGATCAGAATCGTTTTACCAAAAGACAGTgcaaaga aattgaaagatAAACTGTTACCATCAATTGCCACTGTGGAATCTGAAGAT TGGGATTGTGGAAAGCTAGAAATTgaatGTCTGATCGACCCTGGGTTTTA TCGAATCATTGATGACACCATTTCAAAAGAGACCAAAGGTAAAGGTGTTT TGGAAATGTTGACATTGAAAGAAGTTACAGAGGGTGATGAGACTGTCCAA TGAAGTGTATCATAACATATCTTGGAATATGCAGCAGAGATATATGACCA GATGGCAAACATTCGGTGTATTCTTGGCGCAAAAATACCAAAGAAGGTAA TGgaaatttttgttgcttttGGTCAATATAAAGACGACAGAGATCCTTTG GTGGTTATTTGGAATCATCAGTGATTATTCTAACAAAGAGCTTTCTAAAT GAATTTAATTGATTGATCAACTTGATCAACTTGATCGTGCAAACGTTCAT AAGAATCAAACCGGGTCACACTCATATTGTATAGTAAGTGCTGCTCATGG GATAAAAATATTCCGCACAGTTTTTTACAGATAAAGAGTGAGCGACTCAC AATTTCAAAATAGTTACCTTTCACAATCATTTTGCATTGACACATTTAAT AAAGAACTAGTCTAAATATTAATGATAttctgttattttttatttttaaa gaattttattttttttaatattccttcaaaaaatatttaataaaaaacac aaaactTAAAGCCGCATTGAAATTAACTAAAATGTAGATGTGTGAAACAT CTTATTTGATATCATTTGATTAAGATGAAGGCAGGTGCATCAGCCCTCAA CCTCTTCTTTAAAACCTCTCCATCGAGTTTATTTCTCACGTGACATCATA AAACGATTCAGTTTCACTTCGAACAATATTACCTTTACAGTTATCAGCTC AACCTAGTTTAGCTCTTTTTGCCGCTGTATTGAGCCTACTGAAATATCGG ACAGTCTGTTTCCGCAATCCGTCCGTTATTTTAAGTGTCCGTAATTTATG TTTCCGTAATCTCAAATGTCtccctttcaattttttatgctTATGCTTAC GTTTAacctttttcttcattttatttattgtgtaaacttttttcactttt ttggataGTTTATTATATGATTTTAAATTTGTAATTATATGTCTCTTGTC ACTGCTAGATGCTACTTGAAGCTCCTGCCGCTTGCTACTCAGCGCTGTTT TATAAAAGTCTCCGTTAGCCTGGTTTGCAtcaatttgtttttgatttgtc aAGGCTAGTTCTTGGAGTTGATTGAGCATTTGATCTGCACTTTGCGCTGA CTGGAACCCATTCTCCTCCGTAAATCGCTGTTTGAAATCTTTCAATAATT TATTATCTACCATTTTCGCATTTTCGGGTTTTTGAATGATATCTTCATTT GGGTCTATAGCTTTGTTGGATAAGTCGTTCGTTTGTCCTTCAGACATTTG CGAGTCAGTTTTGACGTCTTTCTTGAGCTGATCGAAAATATTAACTTCGT TGATAGTTCTTTGTGTATCAGTTATCTGGTTTTCGGTTGCTTTGGCTTGT CTTTCTTCACTTGTAATGTCTTTCTTCAGTTGGTCGTAAATGTTTGCGTC CGTTATCGGTCGTTGCTCGACGTTCGGTAATTTGTCTTCGTTCTTCATCT CTGATTTCAGttcttgaaacattttttgtctTCCAACAcctgtttcaacg ttttttaatgttttactCATTTCTTGTTTCTTGAGTGCTTCGTAAATATC TTTTTGCGAGAATGATTTCACGTTTACGACTGGGATTGATATTGATGATA CTGTCTTATTCAACCTTGTTGTCAATCCCCTACGATCGCCCATCTCGGGC GGAGGGTGGTCTTCATTTTCGGGGCCCCCTCCATCTTCAGGACCACGCCA TTCAGCTTCTGAATGTTCTATTTCTGGAGGTGGCCCATCTGGTCCACCTT CCCCACCCTCAAAATGCACACCTTCTTCCTCGGGTGGCGGAGCTCCATGG TCATCTTCAGGCGGAGGTGGGGGCGGACCTTCTTGGTGTAGATCTCCTTC GTGCCACTCTCCTGCACGGTTCTTCTGCTCTTCTTCGCCTTGCTTTTCTG CTTCGTCATTAAAATTGGGTTTGTCGTTGTAAAAGTCGTGGTCTGCTCCT AAACAGTGATCAAAACAAAAGACCTCGGGTCAAACTTTTTTGTGGAAGTT TTATTAGTCCTAGGCGAGTCAATTCCTGAAGTAAATCCCAATATTTTCGA TCTgtagaaaaattcttttaactTTCAATCGAAGACTAAACAATAGTGCG TTGAATAGTCTCTTAGGATGAAAAACTAGAGAGAAAAACTTATGTAGTCG GGCAAAAAAGACTTTTCccaataataataattttcctCGTTTAAGgcctc tgaccatagtgaatttttcataattgccgtgtttaaaatgtgttttctga ctgatgtaaccaacaaaactatggcatgttatacattttctg Run BLAST on NCBI transcript from alignment at scaffold_333:123194..128942- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060021 ID=TCONS_00060021|Name=TCONS_00060021|organism=Clytia hemisphaerica|type=transcript|length=5749bp|location=Sequence derived from alignment at scaffold_333:123194..128942- (Clytia hemisphaerica) GTCTTTTGAAATCATAGAAAAATAAAACAACAAATTCCACAATGTCAGCA
TCAATTTTCACCCCTACAAATCAAATTCGGTTGACAAATATTGCTGTTGT
TAGACAAAAGAAGCATGGAAAAAGATTTGAAATAGCTTGCTACAAAAATA
AAGTCATATCGTGGCGTAAAGGAGCGTAAGTTTCCTTTGTAATTTGCGTT
TTGTGTATTTCTTTTCATTGAAATTTTAATTTCAGTCCAGAGATATTTAC
AATGACAAGCTGAATGACTACCAGTCTTTCATATGTGATGAAAAATAAGA
ATAGTTCCAATTTCTTGTGAAACTCAGTCTTTTTAATTGGCCGCAGCAAA
GATTTTGCTGTGGTAAATTTTTGAGAAATATTGAGATAATTACATAACAT
CAATAATCACATAGATTTAAAGATTTGGCCACTGAGTTTCACAAGAAATT
GGAACTATTCATATTTTTCATCACAAATGAAAGAACAGTAGTAAGTAAGC
AACTTTTGAATATTAGTTTCCTAAAATTCAGTTAACAAAAAAAATGCCGC
AGGAAATGATGTTTTGTCTAGGCAAAATTGATAAAAAGCATTTTTCCGCA
GCAAAAGATGCAGAGGCAAAGATAACTGAAATTCCAGGCCAGGAAACTTT
CTGTAAAACCGGCTGCTTTTTCAACTTTACAGTGAAAAGGACCTTGACGA
GGTGGTTCAAACACAACAAATTTTCACCAATGTTTCCAAAGGACAGCTAG
CAAAAAAAGAAGACCTGAAGAAAGCTTTTGGAACAGATGATGATAAAGAA
ATTCTTTTACAGGTATGAACATTTTTCATGGCATTGAAGTTTGAACTTCT
CTTTCTTTTTCTTTTTTTTTGAAATTTCAGAAAGATTTGTAAGAAAGCCG
AGTATAGACTTTAAAGTAAAACATTCCAACAACAAGGATGAAGTGTTGAA
TGGTTACATTTTATTTTATTTATTTTTATTTATTTAATGTTGGTTTGACA
TAATAAAATACTAATTAATACCAACTGTAGAGAATATGCAATACTATAAT
AAAGAATATATAAGATAAAAAATTTTTACATACATATTTTACAAAGGCAA
ATATTTGTAAGGTTTTTTTCAGCGAGGATTTGAAAGAATCGATTGATGGT
TCGAGCTTAATTTTTTCTGGGATTTGATTCCAGATCAGGCTTCCTCGGAA
AAAAAAGGATTGAGTTCCAAAACTTTGAGACTTAGCATTAGGTATTGTCA
TCAAAACTTTGTTTCGGAAGTTAAAAATTTTATTTTCTTCGTTATATAGA
TTTGTTGCATGAACTTTGGATTTAATTTATTTTCGGATTAGTAAACCTCA
CAAAGTAGAAAGCAAAGCTGAATTTCATGAACCGTTCTACATTTGGCGTT
TTGCAATAAAGCCTCATAGTCATTTCTGAAATCACAAAGTAATGTTCTCA
ATGCCCGTTTGTGGACTTTGGTGATTTCTTCATATGTAGTTTTATTACAA
AACATCCAAATTATTGGTGCATAGTTAAAGGTTTACATGATGTAAGCGTT
AGTATCAACTTTCGTTGATCAAAATTTAGATAATTGCCTATTCTGTTCAG
ACTCCAGACTCTCAACCTAGCTTTAGAGCAAAGATCATTGATATGTAATT
CGAAAGATAGATTGTTATCAATGGTAATACCGAGGAGCTCAACAGAATTC
GTAGATCTTATAGTTAAATTCCTGACAGTGATTTCTATAGCAATATTCCG
ATTTCCTAAAACTAGCATTTGAAATTTACCAGGATTTGCAGCGAGGTAGT
TGTTTAAAAACCAGTCTAAGATTATTTTCAGGACAAACTCTAGATTCGAG
ATGACTTCTGCAAAAGTTTCAGCGCACGAGTGTAAGGTATTAACACCGGC
AAAATTGCTAATGCTAGCTTTCACAATAAAAAGAAATAAATCATTTATAA
AAATATTAAATAAAAGAGGCCCGAGAATCGAGCCTTGTGGAACACCTAGA
GTGATCTCTCTCATTCGCTGTATTCAGAGCAGATACAATGATAACAGCTT
TGATATTTTTTCCTATATTTAGATTTTAGCAAAAGGTGAATTACAAGTTT
CAGACAAGGAACGAACTCAACAACTAGAAACCATGTTTCGTGACATTGCA
TCAATCGTATCGGACAAGTGTGTAAATCCGGACACCAAACGCCCTTATAC
TGTTGGTGTCATAGAAAGTGCTATGAAAGAAATTCATTATTCTGTCAAAC
CAACCAAAAGCACAAAACAACAGGTATGTTTCTTGGTTTTCATTTTCGAT
GATCTATTCATCAAGAATTTGAAGGAAAATTTAGAGTGTTTTCAGTTTTC
AAACATAATTTTCACCTGATTTTCTGAGCTAATTAACTTAAAAAAAAACC
TGTTCCTTAGAATTAAGAATTAGTTATCTTATAATCGAAATGACTGTATT
TTTAGCCTTCATTTTTCTTTTCTCTTTTTTTTTCCCCTGTTAAAACCTTT
TCCTATGCACTTTCAATGTCGAGAGCATTGAGTTTAAAGCCCAAAGGGCT
AGATAGAATCTCTAACCTTTCCCAGGCAAGAAAAAGTGAAGCCACTTATT
TCCCATCCAGAACGCACCGCAATCATGACGACGGATTGTATCTATTGGTT
TCTTTGTTTTTGAGGACTTGAAAATAAAAAACCACGCGCAGGTGTTCTGA
ATGGGAAATAAGTGGCTTCATTTCACATCCAGGAGTCTCAAGTCTAGCCC
TTTGATCTTGGTCCTGATGCTAAAATATCCACTATTTTGCAGAAGTATGT
AAGAAACTAAATTTTCTAAGGGACCCGAATTTTCTGTTTTCTAGGCGCTA
GAAGTTATTCGACAGCTTAAAGAAACTATTCCCATAGAGAAAGCACAGAT
GAGGATCAGAATCGTTTTACCAAAAGACAGTGCAAAGAAATTGAAAGATA
AACTGTTACCATCAATTGCCACTGTGGAATCTGAAGATTGGGATTGTGGA
AAGCTAGAAATTGTGAGTATTTAACCTCTCTTAAAGATAATTATATTGCA
CAAGTGTGTTTTTACTGGTTAGCTGCCATATTATGTTGAAGTAGAGGCTA
CTGGATTTCCTTGTAGAGTCTTTGCTACCTTGGCTGTTTGCGAACCTCAT
TGACTATTAGCCTGGTACTCTGTGATACTTAGTATATTTTTAGACCAACC
TTTTTCTACAGCAAAGCTAGTGGACACACTTGGGGGACTCACTTAGTTTC
AAATAAGTTAGGGTGGGTCTAAAAAGCGGACGATACCCCAAAGCACCAGC
AATCCATGACTTTAGCTTCTTTTTTTTTAAGGAATGTCTGATCGACCCTG
GGTTTTATCGAATCATTGATGACACCATTTCAAAAGAGACCAAAGGTAAA
GGTGTTTTGGAAATGTTGACATTGAAAGAAGTTACAGAGGGTGATGAGAC
TGTCCAATGAAGTGTATCATAACATATCTTGGAATATGCAGCAGAGATAT
ATGACCAGATGGCAAACATTCGGTGTATTCTTGGCGCAAAAATACCAAAG
AAGGTAATGGAAATTTTTGTTGCTTTTGGTCAATATAAAGACGACAGAGA
TCCTTTGGTGGTTATTTGGAATCATCAGTGATTATTCTAACAAAGAGCTT
TCTAAATGAATTTAATTGATTGATCAACTTGATCAACTTGATCGTGCAAA
CGTTCATAAGAATCAAACCGGGTCACACTCATATTGTATAGTAAGTGCTG
CTCATGGGATAAAAATATTCCGCACAGTTTTTTACAGATAAAGAGTGAGC
GACTCACAATTTCAAAATAGTTACCTTTCACAATCATTTTGCATTGACAC
ATTTAATAAAGAACTAGTCTAAATATTAATGATATTCTGTTATTTTTTAT
TTTTAAAGAATTTTATTTTTTTTAATATTCCTTCAAAAAATATTTAATAA
AAAACACAAAACTTAAAGCCGCATTGAAATTAACTAAAATGTAGATGTGT
GAAACATCTTATTTGATATCATTTGATTAAGATGAAGGCAGGTGCATCAG
CCCTCAACCTCTTCTTTAAAACCTCTCCATCGAGTTTATTTCTCACGTGA
CATCATAAAACGATTCAGTTTCACTTCGAACAATATTACCTTTACAGTTA
TCAGCTCAACCTAGTTTAGCTCTTTTTGCCGCTGTATTGAGCCTACTGAA
ATATCGGACAGTCTGTTTCCGCAATCCGTCCGTTATTTTAAGTGTCCGTA
ATTTATGTTTCCGTAATCTCAAATGTCTCCCTTTCAATTTTTTATGCTTA
TGCTTACGTTTAACCTTTTTCTTCATTTTATTTATTGTGTAAACTTTTTT
CACTTTTTTGGATAGTTTATTATATGATTTTAAATTTGTAATTATATGTC
TCTTGTCACTGCTAGATGCTACTTGAAGCTCCTGCCGCTTGCTACTCAGC
GCTGTTTTATAAAAGTCTCCGTTAGCCTGGTTTGCATCAATTTGTTTTTG
ATTTGTCAAGGCTAGTTCTTGGAGTTGATTGAGCATTTGATCTGCACTTT
GCGCTGACTGGAACCCATTCTCCTCCGTAAATCGCTGTTTGAAATCTTTC
AATAATTTATTATCTACCATTTTCGCATTTTCGGGTTTTTGAATGATATC
TTCATTTGGGTCTATAGCTTTGTTGGATAAGTCGTTCGTTTGTCCTTCAG
ACATTTGCGAGTCAGTTTTGACGTCTTTCTTGAGCTGATCGAAAATATTA
ACTTCGTTGATAGTTCTTTGTGTATCAGTTATCTGGTTTTCGGTTGCTTT
GGCTTGTCTTTCTTCACTTGTAATGTCTTTCTTCAGTTGGTCGTAAATGT
TTGCGTCCGTTATCGGTCGTTGCTCGACGTTCGGTAATTTGTCTTCGTTC
TTCATCTCTGATTTCAGTTCTTGAAACATTTTTTGTCTTCCAACACCTGT
TTCAACGTTTTTTAATGTTTTACTCATTTCTTGTTTCTTGAGTGCTTCGT
AAATATCTTTTTGCGAGAATGATTTCACGTTTACGACTGGGATTGATATT
GATGATACTGTCTTATTCAACCTTGTTGTCAATCCCCTACGATCGCCCAT
CTCGGGCGGAGGGTGGTCTTCATTTTCGGGGCCCCCTCCATCTTCAGGAC
CACGCCATTCAGCTTCTGAATGTTCTATTTCTGGAGGTGGCCCATCTGGT
CCACCTTCCCCACCCTCAAAATGCACACCTTCTTCCTCGGGTGGCGGAGC
TCCATGGTCATCTTCAGGCGGAGGTGGGGGCGGACCTTCTTGGTGTAGAT
CTCCTTCGTGCCACTCTCCTGCACGGTTCTTCTGCTCTTCTTCGCCTTGC
TTTTCTGCTTCGTCATTAAAATTGGGTTTGTCGTTGTAAAAGTCGTGGTC
TGCTCCTAAACAGTGATCAAAACAAAAGACCTCGGGTCAAACTTTTTTGT
GGAAGTTTTATTAGTCCTAGGCGAGTCAATTCCTGAAGTAAATCCCAATA
TTTTCGATCTGTAGAAAAATTCTTTTAACTTTCAATCGAAGACTAAACAA
TAGTGCGTTGAATAGTCTCTTAGGATGAAAAACTAGAGAGAAAAACTTAT
GTAGTCGGGCAAAAAAGACTTTTCCCAATAATAATAATTTTCCTCGTTTA
AGGCCTCTGACCATAGTGAATTTTTCATAATTGCCGTGTTTAAAATGTGT
TTTCTGACTGATGTAACCAACAAAACTATGGCATGTTATACATTTTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00060021-exon-scaffold_333-1575043694:128768..128942 | TCONS_00060021-exon-scaffold_333-1575043694:128768..128942 | Clytia hemisphaerica | exon |
TCONS_00060021-exon-scaffold_333-1575043694:128131..128260 | TCONS_00060021-exon-scaffold_333-1575043694:128131..128260 | Clytia hemisphaerica | exon |
TCONS_00060021-exon-scaffold_333-1575043694:126670..126870 | TCONS_00060021-exon-scaffold_333-1575043694:126670..126870 | Clytia hemisphaerica | exon |
TCONS_00060021-exon-scaffold_333-1575043694:125931..126098 | TCONS_00060021-exon-scaffold_333-1575043694:125931..126098 | Clytia hemisphaerica | exon |
TCONS_00060021-exon-scaffold_333-1575043694:123194..125611 | TCONS_00060021-exon-scaffold_333-1575043694:123194..125611 | Clytia hemisphaerica | exon |
TCONS_00060021-exon-scaffold_333-1510915933:128768..128942 | TCONS_00060021-exon-scaffold_333-1510915933:128768..128942 | Clytia hemisphaerica | exon |
TCONS_00060021-exon-scaffold_333-1510915933:128131..128260 | TCONS_00060021-exon-scaffold_333-1510915933:128131..128260 | Clytia hemisphaerica | exon |
TCONS_00060021-exon-scaffold_333-1510915933:126670..126870 | TCONS_00060021-exon-scaffold_333-1510915933:126670..126870 | Clytia hemisphaerica | exon |
TCONS_00060021-exon-scaffold_333-1510915933:125931..126098 | TCONS_00060021-exon-scaffold_333-1510915933:125931..126098 | Clytia hemisphaerica | exon |
TCONS_00060021-exon-scaffold_333-1510915933:123194..125611 | TCONS_00060021-exon-scaffold_333-1510915933:123194..125611 | Clytia hemisphaerica | exon |
TCONS_00060021-exon-scaffold_333-1491911889:128768..128942 | TCONS_00060021-exon-scaffold_333-1491911889:128768..128942 | Clytia hemisphaerica | exon |
TCONS_00060021-exon-scaffold_333-1491911889:128131..128260 | TCONS_00060021-exon-scaffold_333-1491911889:128131..128260 | Clytia hemisphaerica | exon |
TCONS_00060021-exon-scaffold_333-1491911889:126670..126870 | TCONS_00060021-exon-scaffold_333-1491911889:126670..126870 | Clytia hemisphaerica | exon |
TCONS_00060021-exon-scaffold_333-1491911889:125931..126098 | TCONS_00060021-exon-scaffold_333-1491911889:125931..126098 | Clytia hemisphaerica | exon |
TCONS_00060021-exon-scaffold_333-1491911889:123194..125611 | TCONS_00060021-exon-scaffold_333-1491911889:123194..125611 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_333 | supercontig | scaffold_333:123194..128942 - |
Blast
BLAST of TCONS_00060021 vs. Swiss-Prot (Human)
Match: SBDS (Ribosome maturation protein SBDS OS=Homo sapiens GN=SBDS PE=1 SV=4) HSP 1 Score: 330.487 bits (846), Expect = 1.439e-104 Identity = 177/247 (71.66%), Postives = 203/247 (82.19%), Query Frame = 3
Query: 51 SIFTPTNQIRLTNIAVVRQKKHGKRFEIACYKNKVISWRKGAEKDLDEVVQTQQIFTNVSKGQLAKKEDLKKAFGTDDDKEILLQILAKGELQVSDKERTQQLETMFRDIASIVSDKCVNPDTKRPYTVGVIESAMKEIHYSVKPTKSTKQQALEVIRQLKETIPIEKAQMRIRIVXXXXXXXXXXXXXXXXIATVESEDWDCGKLEIECLIDPGFYRIIDDTISKETKGKGVLEMLTLKEVTEGDE 791
SIFTPTNQIRLTN+AVVR K+ GKRFEIACYKNKV+ WR G EKDLDEV+QT +F NVSKGQ+AKKEDL AFGTDD EI QIL KGE+QVSDKER QLE MFRDIA+IV+DKCVNP+TKRPYTV +IE AMK+IHYSVK KSTKQQALEVI+QLKE + IE+A MR+R +LP + KKLK+KL P I +ESED+ +LEI CLIDPG +R ID+ I KETKGKG LE+L LK+V EGDE
Sbjct: 2 SIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPLIKVIESEDYG-QQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLKDVEEGDE 247
The following BLAST results are available for this feature:
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