|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060904 ID=TCONS_00060904|Name=TCONS_00060904|organism=Clytia hemisphaerica|type=transcript|length=1366bp
AACATGAAATCAAACCGAAAATTGCAGACCATAATCTTTCAAATCATAAC
AAGactacaatcagccacaatcaaaCGAAACCATATTCTCAAAACGGGAC
AAATATGACGAAACTGGATTCAAATATCGGACAAAATAATGCAAAGCTTG
GTAAAGAAATCGGGAAAAATGTTACTAAGATGGAATCTGATTTGTTGCCC
GATAAAACGAACGCGACGGACGTCGGCTCAGCTTTGTCGACGAATACGAC
GGTCTTTAACaagaaaaacacaacaaaaaccGACGGCGGAAAAAGTGACG
ACGACGAGgataaaaaagttgagaaaCCAAAAAAAAGGATTCTGGCATTT
GGAGATTCATTGACCAAAGGAACGTACAGTAAAAATGGAAGCGTTCATCC
ATACTCACGTCATTTGGTCGAACTTTTAAAAGATTCCGACCCGAATACCA
ACTATGAGATTTTCACTGAGGGTGTAAACGGTGAATGTGCATGTCAGGGA
ATGGTGCACCGCCTTCCAAGTGAGCTTGAAGATCATAAGAAAATAGATTT
AGTAATTATCATAGCTGGAACTAATGACCTATTAAAAAACGATTGTCTAA
GAGACTGTGATTTATTTGAAGCTATCAAAAGACTTCATGAAATCGCACAT
CGTAAAAAAGCGAAATCGATTCTGACGACTATTTTGGAGTCGACTTTTAC
ACCGAAGAAATTGACTTCTCAAGAATATAGAGATGTTTTATCCGATGTTA
ATCAAAATATTCGAGGATACGCAGACTATAGGGATGTGAAAGACAAAGTG
AAGCTTTGTGATATTGCggatgaattcccaagaaaagCGCCGCCGCTTAT
TGATAGAATTCATCCATCGCCTGAAGGTTACGATATATTGGCTGAGATTC
TCTTTCGGTGCATAAAGGAGTTCAAATATTAATGGCAGAAATATTTCTAG
GCTTAAAGCGGAAAGTTTTGTCTTTACATAAGAGCgatattgtttcaatt
ttaatttacgcaagctttttgatattgaattgacacggatgtggagcaag
attggtcaaaaagaggaaaagcaAAAACATATTGCTtataggaaaagaaa
aacatttttttgcttatatcagcataatataacaataggcagacactgtc
ctgatatgaaatatgtgtctgatatgaaacgagaacacttttgtaaaaat
aaaatctttaagcaGTGATTCTTTGATTCCTAGTATACGAGCTTAAACCC
TTCCAGACAAGAGAGAtgcactttttccaaaaaaggaaaaaatcgaaata
tttcGTATAGGTTTAATGGATAAGCGCCTCAAATAGATCTATCTTGCTCA
TAATTTTCTATTCTTT Run BLAST on NCBI protein sequence of TCONS_00060904-protein >TCONS_00060904-protein ID=TCONS_00060904-protein|Name=TCONS_00060904-protein|organism=Clytia hemisphaerica|type=polypeptide|length=309bp
HEIKPKIADHNLSNHNKTTISHNQTKPYSQNGTNMTKLDSNIGQNNAKLG
KEIGKNVTKMESDLLPDKTNATDVGSALSTNTTVFNKKNTTKTDGGKSDD
DEDKKVEKPKKRILAFGDSLTKGTYSKNGSVHPYSRHLVELLKDSDPNTN
YEIFTEGVNGECACQGMVHRLPSELEDHKKIDLVIIIAGTNDLLKNDCLR
DCDLFEAIKRLHEIAHRKKAKSILTTILESTFTPKKLTSQEYRDVLSDVN
QNIRGYADYRDVKDKVKLCDIADEFPRKAPPLIDRIHPSPEGYDILAEIL
FRCIKEFKY Run BLAST on NCBI transcript from alignment at scaffold_349:369534..370899 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060904 ID=TCONS_00060904|Name=TCONS_00060904|organism=Clytia hemisphaerica|type=transcript|length=1366bp|location=Sequence derived from alignment at scaffold_349:369534..370899 (Clytia hemisphaerica)
AAAGAATAGAAAATTATGAGCAAGATAGATCTATTTGAGGCGCTTATCCA
TTAAACCTATACgaaatatttcgattttttccttttttggaaaaagtgca
TCTCTCTTGTCTGGAAGGGTTTAAGCTCGTATACTAGGAATCAAAGAATC
ACtgcttaaagattttatttttacaaaagtgttctcgtttcatatcagac
acatatttcatatcaggacagtgtctgcctattgttatattatgctgata
taagcaaaaaaatgtttttcttttcctataAGCAATATGTTTTtgctttt
cctctttttgaccaatcttgctccacatccgtgtcaattcaatatcaaaa
agcttgcgtaaattaaaattgaaacaatatcGCTCTTATGTAAAGACAAA
ACTTTCCGCTTTAAGCCTAGAAATATTTCTGCCATTAATATTTGAACTCC
TTTATGCACCGAAAGAGAATCTCAGCCAATATATCGTAACCTTCAGGCGA
TGGATGAATTCTATCAATAAGCGGCGGCGcttttcttgggaattcatccG
CAATATCACAAAGCTTCACTTTGTCTTTCACATCCCTATAGTCTGCGTAT
CCTCGAATATTTTGATTAACATCGGATAAAACATCTCTATATTCTTGAGA
AGTCAATTTCTTCGGTGTAAAAGTCGACTCCAAAATAGTCGTCAGAATCG
ATTTCGCTTTTTTACGATGTGCGATTTCATGAAGTCTTTTGATAGCTTCA
AATAAATCACAGTCTCTTAGACAATCGTTTTTTAATAGGTCATTAGTTCC
AGCTATGATAATTACTAAATCTATTTTCTTATGATCTTCAAGCTCACTTG
GAAGGCGGTGCACCATTCCCTGACATGCACATTCACCGTTTACACCCTCA
GTGAAAATCTCATAGTTGGTATTCGGGTCGGAATCTTTTAAAAGTTCGAC
CAAATGACGTGAGTATGGATGAACGCTTCCATTTTTACTGTACGTTCCTT
TGGTCAATGAATCTCCAAATGCCAGAATCCTTTTTTTTGGtttctcaact
tttttatcCTCGTCGTCGTCACTTTTTCCGCCGTCggtttttgttgtgtt
tttcttGTTAAAGACCGTCGTATTCGTCGACAAAGCTGAGCCGACGTCCG
TCGCGTTCGTTTTATCGGGCAACAAATCAGATTCCATCTTAGTAACATTT
TTCCCGATTTCTTTACCAAGCTTTGCATTATTTTGTCCGATATTTGAATC
CAGTTTCGTCATATTTGTCCCGTTTTGAGAATATGGTTTCGtttgattgt
ggctgattgtagtCTTGTTATGATTTGAAAGATTATGGTCTGCAATTTTC
GGTTTGATTTCATGTT Coding sequence (CDS) from alignment at scaffold_349:369534..370899 >TCONS_00060904 ID=TCONS_00060904|Name=TCONS_00060904|organism=Clytia hemisphaerica|type=CDS|length=930bp|location=Sequence derived from alignment at scaffold_349:369534..370899 (Clytia hemisphaerica)
TTAATATTTGAACTCCTTTATGCACCGAAAGAGAATCTCAGCCAATATAT
CGTAACCTTCAGGCGATGGATGAATTCTATCAATAAGCGGCGGCGctttt
cttgggaattcatccGCAATATCACAAAGCTTCACTTTGTCTTTCACATC
CCTATAGTCTGCGTATCCTCGAATATTTTGATTAACATCGGATAAAACAT
CTCTATATTCTTGAGAAGTCAATTTCTTCGGTGTAAAAGTCGACTCCAAA
ATAGTCGTCAGAATCGATTTCGCTTTTTTACGATGTGCGATTTCATGAAG
TCTTTTGATAGCTTCAAATAAATCACAGTCTCTTAGACAATCGTTTTTTA
ATAGGTCATTAGTTCCAGCTATGATAATTACTAAATCTATTTTCTTATGA
TCTTCAAGCTCACTTGGAAGGCGGTGCACCATTCCCTGACATGCACATTC
ACCGTTTACACCCTCAGTGAAAATCTCATAGTTGGTATTCGGGTCGGAAT
CTTTTAAAAGTTCGACCAAATGACGTGAGTATGGATGAACGCTTCCATTT
TTACTGTACGTTCCTTTGGTCAATGAATCTCCAAATGCCAGAATCCTTTT
TTTTGGtttctcaacttttttatcCTCGTCGTCGTCACTTTTTCCGCCGT
CggtttttgttgtgtttttcttGTTAAAGACCGTCGTATTCGTCGACAAA
GCTGAGCCGACGTCCGTCGCGTTCGTTTTATCGGGCAACAAATCAGATTC
CATCTTAGTAACATTTTTCCCGATTTCTTTACCAAGCTTTGCATTATTTT
GTCCGATATTTGAATCCAGTTTCGTCATATTTGTCCCGTTTTGAGAATAT
GGTTTCGtttgattgtggctgattgtagtCTTGTTATGATTTGAAAGATT
ATGGTCTGCAATTTTCGGTTTGATTTCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060904-exon-scaffold_349-1491911889:369534..370899 | TCONS_00060904-exon-scaffold_349-1491911889:369534..370899 | Clytia hemisphaerica | exon |
| TCONS_00060904-exon-scaffold_349-1510915933:369534..370899 | TCONS_00060904-exon-scaffold_349-1510915933:369534..370899 | Clytia hemisphaerica | exon |
| TCONS_00060904-exon-scaffold_349-1575043694:369534..370899 | TCONS_00060904-exon-scaffold_349-1575043694:369534..370899 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_349 | supercontig | scaffold_349:369534..370899 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013830 | SGNH_hydro |
Blast
The following BLAST results are available for this feature:
|
