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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006064 ID=TCONS_00006064|Name=TCONS_00006064|organism=Clytia hemisphaerica|type=transcript|length=4212bpRun BLAST on NCBI protein sequence of TCONS_00006064-protein >TCONS_00006064-protein ID=TCONS_00006064-protein|Name=TCONS_00006064-protein|organism=Clytia hemisphaerica|type=polypeptide|length=732bp MKWMSIKELMLFFLLMLFYVEFVASTDESSTQLNQTQREDLKKIVHPYAERun BLAST on NCBI transcript from alignment at sc0000062:334875..358488- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006064 ID=TCONS_00006064|Name=TCONS_00006064|organism=Clytia hemisphaerica|type=transcript|length=23614bp|location=Sequence derived from alignment at sc0000062:334875..358488- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000062:334875..358488- >TCONS_00006064 ID=TCONS_00006064|Name=TCONS_00006064|organism=Clytia hemisphaerica|type=CDS|length=35184bp|location=Sequence derived from alignment at sc0000062:334875..358488- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006064 vs. Swiss-Prot (Human)
Match: DDX24 (ATP-dependent RNA helicase DDX24 OS=Homo sapiens GN=DDX24 PE=1 SV=1) HSP 1 Score: 277.715 bits (709), Expect = 7.839e-78 Identity = 170/403 (42.18%), Postives = 262/403 (65.01%), Query Frame = -2
Query: 2865 LFGVVIAPTRELALQIQTHLKEITKHCDVAVCSLVGGLAPEKQERLLSRCPDIVIATPGRLLKMIESGNEHLEKISGIRFLVIDECDRMFEKGHFRELKNILEKMK--LKDRKVQKYVFSATLS-VEQSPKKQFY-------------DDLCASISLDAKACVVDLTTRRITVEQLRQLKVICETNEKEIYLFHFLLTYPGRTIVFANTIACIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDAFKASKNGLLVCTDVAAHGLDIPEVDNVVHFQLPKDPKVYIHRSGRTARASKDGRTLIINGPEDFEAFRSISKVLKENE-MESLHIESHLMRSLKERIVLAKDIERKMYNQQKSKSDAAWQKRVSKDIGIDADDSRIDAG--DKKELKGKQTQLKRLLK 4016
L G+V+ PTRELA+Q++ H+ + + + LVGG++ +KQ+R+L+R P+IV+ATPGRL ++I+ + HL + +R LV+DE DRM EKGHF EL +LE + + K Q VFSATL+ V Q+P + + D L I + K V+DLT TVE L + K+ CET+EK+ YL++FL+ YPGR++VFAN+I+CI RLS LL+VL++ PL LHA QKQRL+ L+ F ++ +L+ TDVAA GLDIP+V +V+H+Q+P+ ++Y+HRSGRTARA+ +G +L++ GPED F+ I K LK++E + +++ M +KERI LA+ IE+ Y ++ +W ++ + + I+ ++ G D++E + +Q Q+K L K
Sbjct: 388 LLGLVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLIGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDVVKERIRLARQIEKSEYRNFQACLHNSWIEQAAAALEIELEEDMYKGGKADQQEERRRQKQMKVLKK 790 The following BLAST results are available for this feature:
BLAST of TCONS_00006064 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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