TCONS_00061070 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061070
Unique NameTCONS_00061070
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length641

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061070 ID=TCONS_00061070|Name=TCONS_00061070|organism=Clytia hemisphaerica|type=transcript|length=641bp
TAAAGTTGTTCTTGAAAATAACGtAAGAACTTGCAGCAATCAAGATGTAT
TCTGGTCCCCTTTTGGGCGTGGTTTTAttggttttagcctcgttttcgtT
ATGTGCGGAACATGGCGTGCAAATGAGGCTGACAAAGAAAGGCATGGATT
ACACTGTCAACGTTGGTATTGACATcttaaagaaagatttgaaaaaccTA
AAGATCAATAAAAAAGGAACTTATGGCAAAGTTCACTTTAACATCAAAGA
ccTGAGTTTCAGCGAATTAGACTTTGGTCAACATGCTTTGAGTCCAGTGG
AAGGAGTTGGTATGAAGGGCGTTGTCTCTGGCATTGGATTGACTGCTTAT
GCGACTTTCAGTTACACATATATCTTCTTCTCCGATACAACACAGCTTCG
TTTGATAGCAAGTGGTATTGATTTTGACATGACCTTgaaaatagGAGACG
ACAAAGGTGGCCACCCAACAATCAGTGTTCAAGAATGTCATGCAAACGTT
GGAAGCATTGATGTAGCGTTCAAAGGGGGGATGAGTTTCATTTACAATCT
CCTCAAATCCAAGATCGAATCGGAAATGGAAGAAACTCTGAAATCTTTGC
TTTGTAAAATGGTGACAGAAGAGATCAACACAAAAGCCAGN
Run BLAST on NCBI

transcript from alignment at scaffold_354:434599..438751+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061070 ID=TCONS_00061070|Name=TCONS_00061070|organism=Clytia hemisphaerica|type=transcript|length=4153bp|location=Sequence derived from alignment at scaffold_354:434599..438751+ (Clytia hemisphaerica)
TAAAGTTGTTCTTGAAAATAACGtgtatgtttattttttaaccTTTAGCA
GCCATGAAAGACTCCGAGAAATAGGtaaattttcacttttatttaTTCAT
ATGAATTGCCTTATCGATGAGGTGACGAGGTGATATANTAGACTCGATCT
ATTTTTTCGAGTAATAGTGATCTGTTCCTTTTGAAAACAATGCTAAACTT
TTGTTTATAGTCAAAATAATAAAACGTCAAGCTTTTTTGACGACTTTATC
ACGTAGATACTGTATAGCAATCTAGAAAAACAGATCATAATAATTTTTGG
AACAGATCACACACGTTTTGGATATTCAATTTGTATTTCAGAAGAACTTG
CAGCAATCAAGATGTATTCTGGTCCCCTTTTGGGCGTGGTTTTAttggtt
ttagcctcgttttcgtTATGTGCGGAACATGGCGTGCAAATGAGGCTGAC
AAAGAAAGGCATGGATTACAGTAAGTCTTGTTGAACTTCTTTGCATATTT
TTCGTGGACAATGATGGAGGCACATTGTGGTCGAAACAGATGATGTTTTC
GATACTAAgtataattttatttcaaaagatttgaaaataagaTCTTATTT
TCCAAGAATGGCAGCGTAAAAATCACTTCCTTTATTTTAACTTTCTTGGC
AGTTTCGCACTATTTCTTTTGGTGTAGTTGAAAAGAAAGTATTCGGTGTT
AAAGTCTAGTATTATGTGATATTcaaagttgaaacttttctaGCTGTCAT
CTGAATTCTTTAGCTGCTATTACTCTACTTAGCTGAAAATATAAACTGGA
ATCGTTTATAATTCGTGTAATACGGTTGTTATATGCTAATACaataattg
ttacgggataatatcagtttgtataGGTCTAGCAAGCTCGACTACTGAAT
ATTCAAAGGAGGTATTATGTTTACTATAAGGCAATGCTTAAAATGGTACG
ATATGTTTACTACAACAGAATTGTTTCATTCATTATcaatatgtttttgt
tttctttgtggtcaagtatttttaaaatattgttttttatcGCACTTGAT
ACTCTTAGAGCTGTACCCATGGACTTTGtttacacaaaaaaaatcacttt
aatcggattaactttcgcgagattaaatttcgtgatttCGCAAATTTTTT
CCGTTTTTACGAAATTAAGCGAAAACGCGTGAGACTCCTGactcgcgaaa
ataaatccaccacaaaaattttaaaatcgcaTTTTTGGTGGAGAAACCAG
TTCAAAGTCTCCATTTGTGGCAAAACATGGCTATTTTTCAActgttttca
ggcttattcgcgaaattaaatccacacgaaatttttcaaaactatgactc
gcgaaattaaatccagatcATTTCGCGATTGTTttcgctcgcgaaattta
atccgattgaTAAAGTAAGTAATATTCATATCCCCTTTTTCCCCTGAAAT
TTAAATCTTTGAATAGTTTTGTAATTCCAATGATTTGATTGGTTCTTTAT
TGGGCATTCTCCACAGTCTTATTTTGAGATACAGATGAGGttttctaatt
cgattttcaaggtaatctggattttcattgaaaatggaAACTTATAAACT
AATCGAATTCGAGAGTGTCAACTTCGATTGCACCTACAAACATGTATCTT
CCATTTACCCCCTTTGTTTCAACCCCGCCTCCGGCCATGATTTCCAAATA
GCTTCTCTTAATAAACTTACAGTACGTATCTTTTTTCAGCTGTCAACGTT
GGTATTGACATcttaaagaaagatttgaaaaaccTAAAGATCAATAAAAA
AGGAACTTATGGCAAAGTTCACTTTAACATCAAAGAGTAAGAAacaatta
ctcttaggttccaaataaacggggggggNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNgggggggcccgtttatttggaacctaag
agtaattgaTAAATAGATAGATTTATAATTAACATTTTTCTAATCCTCGA
AAATGACTATTACAAGGTCTAAAAGGTAGCTAAAAGATGTTAGCTTCCCG
GGATCTCCTGAATCTATTATGAAATTTCTAATGAATtatcttttttttgc
ttttcaaaaatctagccTGAGTTTCAGCGAATTAGACTTTGGTCAACATG
CTTTGAGTCCAGTGGAAGGAGTTGGTATGAAGGGCGTTGTCTCTGGCATT
GGATTGACTGCTTATGCGACTTTCAGTTACACATATATCTTCTTCTCCGA
TACAACACAGCTTCGTTTGATAGCAAGTGGTATTGATTTTGACATGACCT
TgaaaataggtaaaagaaaattttgattttttgagatCCTATAAATATAT
CGTGTGAAAAATAACCTACTTTTTTCGTTGACATTTCCCATTTAggcaat
ttaaaatatttaaaaatactcTTGTTTTATACTCGGCGTTTTCACCCATT
CCtcaaattttacgttacaatatatattattattatattacgTTACAAAC
TATCGTTCcgaaaaaatgattttctgtGAAATCCACCACCAAAAGTCGAA
AAAATNCGCTCcgaaaaaatgattttctgtgaaattcaccaccaaaagtc
gaaaaaaaacgaaaccttGCCAACATCCAAGGTTATTATCAACAATTCTT
CTTGATTTTCAAACCTTTCCATCATAGGAGACGACAAAGGTGGCCACCCA
ACAATCAGTGTTCAAGAATGTCATGCAAACGTTGGAAGCATTGATGTAGC
GTTCAAAGGGGGGATGAGTTTCATTTACAATCTCCTCAAATCCAAGATCG
AATCGGAAATGGAAGAAACTCTGAAATCTTTGGTAAGAAGGACTAAAAAA
AATCCAGAGTGGTCTTGTTTTTGAGAGTGTGAAAATTCAGGTTAGTCCtg
agaaataaaaaatccagggtggtcttgTTTTTGAGAGTTTAAAGATCCAG
GGTGGTCTTGTTTTTGAGAGTTTAAAAATCCAGAGTGGTcccgaaaaatc
aaaaaaacaatcCACAGGTGTCACTTTTAGACTATCAACATTCAATCAAG
TGGTGAACTACCAAACTGAGGACTGGAGGTTAAGCATATAATATTATGTA
TTTCCGTGAGTTCTTGCTTCAGTCCGTTTTATGCACGCGGGTGTGACCTA
GATTTCCGAAGCTGTCCCTGACCTAATTTCACAATATTATAATTAATTTT
ATCAATTTCAGCTTTGTAAAATGGTGACAGAAGAGATCAACACAAAAGCC
AGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038329XLOC_038329Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061070-exon-scaffold_354-1491911889:434599..434622TCONS_00061070-exon-scaffold_354-1491911889:434599..434622Clytia hemisphaericaexon
TCONS_00061070-exon-scaffold_354-1510915933:434599..434622TCONS_00061070-exon-scaffold_354-1510915933:434599..434622Clytia hemisphaericaexon
TCONS_00061070-exon-scaffold_354-1575043694:434599..434622TCONS_00061070-exon-scaffold_354-1575043694:434599..434622Clytia hemisphaericaexon
TCONS_00061070-exon-scaffold_354-1491911889:434940..435068TCONS_00061070-exon-scaffold_354-1491911889:434940..435068Clytia hemisphaericaexon
TCONS_00061070-exon-scaffold_354-1510915933:434940..435068TCONS_00061070-exon-scaffold_354-1510915933:434940..435068Clytia hemisphaericaexon
TCONS_00061070-exon-scaffold_354-1575043694:434940..435068TCONS_00061070-exon-scaffold_354-1575043694:434940..435068Clytia hemisphaericaexon
TCONS_00061070-exon-scaffold_354-1491911889:436338..436434TCONS_00061070-exon-scaffold_354-1491911889:436338..436434Clytia hemisphaericaexon
TCONS_00061070-exon-scaffold_354-1510915933:436338..436434TCONS_00061070-exon-scaffold_354-1510915933:436338..436434Clytia hemisphaericaexon
TCONS_00061070-exon-scaffold_354-1575043694:436338..436434TCONS_00061070-exon-scaffold_354-1575043694:436338..436434Clytia hemisphaericaexon
TCONS_00061070-exon-scaffold_354-1491911889:437614..437807TCONS_00061070-exon-scaffold_354-1491911889:437614..437807Clytia hemisphaericaexon
TCONS_00061070-exon-scaffold_354-1510915933:437614..437807TCONS_00061070-exon-scaffold_354-1510915933:437614..437807Clytia hemisphaericaexon
TCONS_00061070-exon-scaffold_354-1575043694:437614..437807TCONS_00061070-exon-scaffold_354-1575043694:437614..437807Clytia hemisphaericaexon
TCONS_00061070-exon-scaffold_354-1491911889:438176..438330TCONS_00061070-exon-scaffold_354-1491911889:438176..438330Clytia hemisphaericaexon
TCONS_00061070-exon-scaffold_354-1510915933:438176..438330TCONS_00061070-exon-scaffold_354-1510915933:438176..438330Clytia hemisphaericaexon
TCONS_00061070-exon-scaffold_354-1575043694:438176..438330TCONS_00061070-exon-scaffold_354-1575043694:438176..438330Clytia hemisphaericaexon
TCONS_00061070-exon-scaffold_354-1491911889:438710..438751TCONS_00061070-exon-scaffold_354-1491911889:438710..438751Clytia hemisphaericaexon
TCONS_00061070-exon-scaffold_354-1510915933:438710..438751TCONS_00061070-exon-scaffold_354-1510915933:438710..438751Clytia hemisphaericaexon
TCONS_00061070-exon-scaffold_354-1575043694:438710..438751TCONS_00061070-exon-scaffold_354-1575043694:438710..438751Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:434599..438751 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.985493	1.0411	1.02284	0.363887	2.40432	6.46365	21.9464	3.59238	35.6602	23.0467	11.1017	72.1888	48.7828	36.3434	30.1182	41.5691	10.2252	13.2428	65.5623	95.5163	47.9591	39.4546	34.9342	38.7433	2.42382	3.05454	8.22045	13.5803	122.846	105.513
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061070 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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