TCONS_00061312 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061312
Unique NameTCONS_00061312
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1338

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061312 ID=TCONS_00061312|Name=TCONS_00061312|organism=Clytia hemisphaerica|type=transcript|length=1338bp
AGGNATTTAAAAGATAACTTGACTGTTTCAGTTGCTGATATCCCTGGCAT
AGTCAAGGGAGCCCACGAAAACATTGGTCTGGGACATGAATTCTTACGCC
ACGTTGAACGTTGCCATATGTTAATGTATGTTATGGATTGCTCATCACCG
GACATGCTTTCCCAGTTCGAAATCCTGAAAACGGAGTTAGATCTTTACAA
AGCTGGACTGTCAACAATATCATCAATTTTCATAGCGAATAAAATCGATT
TGATACAAGACCAAGACGAAATGAGAAATAACATACAACAACATGTAAAC
ATGCCTGTTGTCCCACTCTCTGCTAAATTCAGTCAAAATATTGAAGAGTT
GAAAAGTCTTATATTGCAGAAATGGAAATTTAAGCATACTGGCTaatgag
aaaagaaaaatgaaaagtagATTATATGTTGTGGATTGTTCATCACCAGA
CATGCTTTCCCAGTTCGAAATCCTGAAAACGGAGTTAGATCTTTACAAAG
CTCGACTGTCAACAATATCATCCATCTTCATAGCTAATAAAATCGATTTG
ATACAAGATCAAGACGAAATGAGAAATAACATACAACAACATGTAAACAT
GCCTGTTGTACCGCTCTCTGctaaattcaatcaaaatattgaaGAGTTGA
AAAGTCTTATTATTGCAGAAATGGAAATTTAAGCTTACTGGCTAgtggag
aaaataaaaataaaaaatatgttattttagattttatttagttttttcaa
aagtatgatGTTTGGTAGTATATTTTATATAAGCTTTGTCTTTTAAAAAT
GGCTTGCTTTCTTAATAATTGTTATGGTGTCAGGGTTGAAATGCATTATT
ATGAATAAACCTTTGTTTCTTTTAGtgaaaaaacaatagaataactagaa
aaaaattgataataaaaagatTATTCAAAAGCATATTGAAAAATGGAGGT
TGAAAACAATGTCTCAAGCCACTCCACAGCTAAATTTGGACACATTTCAA
AGTTCCTGAACACAAATGGCCCAATGCAACATCCAGAATTTGAAGCTGCC
CCAATTCTGTTGGATtttattcgagaaaatgtcaatattttGGTCATTGG
TGCTGGTGGTTTAGGCTGTGAACTACTTAAAGACTTGGCATTGAGCGGAT
TTCAAAACATCAGTGTGATTGATATGGATACGATTGACCTCTCAAACTTG
AATCGACAATTTCTTTTTAGAGCTAAAGATATTGGCAAACCAAAAGCTGA
AGTGGCAGCAGCATTCATCAATAAACGAATACCAAGTTGCAATATCACAC
CTGCATAGATATTACAATAAAATTCAAGATTTCGATGA
Run BLAST on NCBI

transcript from alignment at scaffold_355:367208..376176-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061312 ID=TCONS_00061312|Name=TCONS_00061312|organism=Clytia hemisphaerica|type=transcript|length=8969bp|location=Sequence derived from alignment at scaffold_355:367208..376176- (Clytia hemisphaerica)
AGGNATTTAAAAGATAACTTGACTGTTTCAGGTTTTTATCTTTTGTTTCT
TTGTGTTAACACATTTCTGCCTATTACCTTTTAGTAACATTACCTGATAT
TCTAGGGATTTCATAATAGTTTGCTTGATTTTGGCCCTCAATTTCTGAAT
ATATGGGGTTTCAAATAATTTTCATGACTTTTAGTGCATCATGTAAATTT
GAGATATTTTGTTCATGCTTACTCATTAAAAAACCCAAATTATTTTTATT
TGTAACCGTTTAGTTGCTGATATCCCTGGCATAGTCAAGGGAGCCCACGA
AAACATTGGTCTGGGACATGAATTCTTACGCCACGTTGAACGTTGCCATA
TGTTAATGTATGTTATGGATTGCTCATCACCGGACATGCTTTCCCAGTTC
GAAATCCTGAAAACGGAGTTAGATCTTTACAAAGCTGGACTGTCAACAAT
ATCATCAATTTTCATAGCGAATAAAATCGATTTGATACAAGACCAAGACG
AAATGAGAAATAACATACAACAACATGTAAACATGCCTGTTGTCCCACTC
TCTGCTAAATTCAGTCAAAATATTGAAGAGTTGAAAAGTCTTATATTGCA
GAAATGGAAATTTAAGCATACTGGCTAATGAGAAAAGAAAAATGAAAAGT
AGATTATATGTTGTGGATTGTTCATCACCAGACATGCTTTCCCAGTTCGA
AATCCTGAAAACGGAGTTAGATCTTTACAAAGCTCGACTGTCAACAATAT
CATCCATCTTCATAGCTAATAAAATCGATTTGATACAAGATCAAGACGAA
ATGAGAAATAACATACAACAACATGTAAACATGCCTGTTGTACCGCTCTC
TGCTAAATTCAATCAAAATATTGAAGAGTTGAAAAGTCTTATTATTGCAG
AAATGGAAATTTAAGCTTACTGGCTAGTGGAGAAAATAAAAATAAAAAAT
ATGTTATTTTAGATTTTATTTAGTTTTTTCAAAAGTATGATGTTTGGTAG
TATATTTTATATAAGCTTTGTCTTTTAAAAATGGCTTGCTTTCTTAATAA
TTGTTATGGTGTCAGGGTTGAAATGCATTATTATGAATAAACCTTTGTTT
CTTTTAGTGAAAAAACAATAGAATAACTAGAAAAAAATTGATAATAAAAA
GATTATTCAAAAGCATATTGAAAAATGGAGGTTGAAAACAATGTCTCAAG
GTAAACAAATTTTATGTTATATTTCCTTACCTTGATTGCATCATAATTCT
ATTTTTCTCTAATTTAGACAGACATCAGACATTCTCCGACCATAGATTTA
TAAAGCCTGAAGGGCTAGATGTCGTGCTTGGCCATCGCAGGCAAAAAAAA
TTGAATATCAGCAAAAGTACGCCATCTAGCCGTGTCTCCAACCCAAAATC
ATAATTTTCAAGCTAAAGAAACAGACATGTTTTCTGACCAATTTGAAACT
GTTTTTTTGAGCCGAAGATTAGTGGAGAATCGATAGTTACTTGAAAATTA
AAATAGATCATTGCATAGAAATCGAAACAAGGCATCCATTTGACTTTAGA
CGGTCGACTATCTGTTGACCTTTTTTAAACAAAAAGTTCCAGGAACAACC
AAGACACTCTCCAGCTCTCTCTACAATATTTTCAATTCTTATATTTTTGT
TGATCTTATCTTCAGCCACTCCACAGCTAAATTTGGACACATTTCAAAGT
TCCTGAACACAAATGGCCCAATGCAACATCCAGAATTTGAAGCTGCCCCA
ATTGTAAGTGATTGATATTACAATTCCTGTGATTGTTTTATTTTATTTTT
TTATTTAAATCTCTTTTATCACCATTAGATTTGGTATAATACTTAACATC
CAAAAAAATTTACAACTAAATAAAAACTATGTTTAAAAGAGTTTGGAAAC
TATTCTAGTCGCGAGTTAGGGAGTTGCTAGTTTCGAGTTGGGGAGTTAAA
AAATTACCGGCTCCCGAAAAAGAATAACATCAAAAGTACGATTTTGAAAG
TAAATGTAATATGAGAGTAATATATAACACATATAATACGTATAATACAT
ATACCACCTGTAATATGCTTATTTGCCTTAAACACGTGCGCTGAGAGAAT
GGAAAGCTATTTTCTACTGCCAATTCATATCCATTTATATTTCCTGCATC
ATATTGAGTATAAATATAATTCTTGATTAAAGTGACTTTAGACCCATTGT
ATTTTATAATATTGTGATCAAAATTTTTATTAAAAAGTGTCAATTCCAAT
GATAACAAAAGAAAGTGTCATTATTTTTCTAGCTCTATAAGCTATCTCTA
CGAATTTTTTGAGGCTAAGATGACTGTCAACTTATATCTTTTTATACAAT
AAGCATCACTTGCAGTATGATCAATATTTTTTGGGGAATTTGTTTGATAA
TCATTGTATTTAAAGATTTTGTCAATATTTTTACAAGAACGTGTCATGTT
GTCAGCATTATGACAATGACATAACAGTACTAAGTATTTTGGCTTTGCTA
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCTAATTTGAAATTTGTACTTTTG
GGCTACATTAGTTTAAATTAGAAAATTTTCGGTCGCCGTAAAGTTTTACG
AACATCCCAACTCGAAACTAGCAACTCCCAAACTCCCCAACTCACCAACT
AGAAAATTACCTAGACTCTGTTTAAAACAAAATGTACATGTTTTCGTTTT
TATTTGAAAAGAAATGCATAAATAACGACACCTGATGTTAAAAAAATAGT
GATGAAAAAGCCCAAAAAGTTGTAACTATTTCCGCAAAATGAACATTGGA
TAAAATGATAGATATTGCTTGAAATGGGTGTGTTTCTTTTGATCAATTTT
ATCGTTGTCGAGGCAAAAGGGCAAATCTCAAAATTAGTATTTTTGGAATG
TGAGAATTTTTCTATAAGATAAACCTTTGACAACGAGGTTCGGCCTTGGA
TCATGTGGATGAATCTCTCCTCTATGAGAGGAAAGGACCAATTTCTTTGT
CAAAGGTTTATCTTATAGAAAGATTTTCAATATGCTAAGAGACTCATTTT
GAGATGGGTCCTTCTGCTTCGACAACGACGAATATTTTTTCCTTTTTTCG
TTTCAGCTGTTGGATTTTATTCGAGAAAATGTCAATATTTTGGTCATTGG
TGCTGGTGGTTTAGGCTGTGAACTACTTAAAGACTTGGTAAAAATTCAGT
GATATATTCGGTGATGTAAACAAAAGACTGTGGGTTAACTAAAAGCTAGG
GGGACTGGCACTATAGACTGTATAGAAAACCCTGGTCTGGAAGCTTTTTG
TTAGCTTTTTCCTTTGTTAATATCAAAAGATAAAAATCGTTTTGCTCAGT
TTTTGATCAAGTTACCAAGTACTCCTCTTGGGATTGGTTTAAGATTCAAT
CACATGATCAAAAAGTGAGCAAAACAAACTAGTTTCTCAACGCAAGTTCA
AGTGAAGAACAATGAAAATAAACAATGAAAAAAAAAAAGACTTTCAGACC
GGTGTTTTTTTATACGAAATATGCTGGCACTAATGCAAAATAGCTNGAAA
GAAAAAAAGGCTTGTTTTTTATACGGAATATGCTGGCACTAATCCAAAAT
AGCTGACTGCATGTGCCTGAGCTTAGGGTGTATCTTTCGAAATAGCCAAA
ACACACTGTTGGGAGAATCGTATTGTATGGCTAACAGTTGGGTGGATTCA
ATGGACTCAAGAAAACCTAATAAAAATTGCAAAAAATACTTTAAGGAAAT
TATAGGCCAGGCTATTTAGAGCAAAATATATTAAGACAGTGTTTCTTTGA
CAGCTTAAAAATAATTTCAAAAATTGATAAATATGGGGATGGCTAATAAG
ATCTGTGGTGCTGAAATTTATATAAAAAACGAGGGGCCTTTATTAGGAAT
AGATTTGTGTCAATCAATGAAAACATTGGCAGATTCATTGCTTTTACTGA
TCATTTTTCTCTTTCATCTCTTTTCAAAAGGCATTGAGCGGATTTCAAAA
CATCAGTGTGATTGATATGGATACGATTGACCTCTCAAACTTGAATCGAC
AATTTCTTTTTAGGTACCCTTGTTGACACTCCTCTGTTCATAGTTTTTAG
CACTTTGAGCCTCTAAGCTCTAGTTTAGAGGGCCGACTTTCTGCCCTTCC
CATTCTTATTGTTAAAGTAGGCAAAATTTGGGCACTATAATAAGTTGGCA
GTTAAAATCTTTGCTTTAAAAGGGTTGAAAGAAGACATTGCATTGACGTC
AAAAGAGGGCAAAGCATTGACTTTAGACAGCCAACTCTCTGCCAACTTCA
ATTCGCAATTAGAATAGGCGGAGCAAAAAGTGGGCCGTCTTAACTAGAGC
TAATTAATTATTATTACATATTGTGAGGTCATCGANTAATTCGCAATTAG
AATAGGCCGGGCAAAAAGTGGGCCGTCTAAATTAGAGCTTATTAATTGCT
CATATCCTTTTCTTCTGTTTTCTTACGTTTCTAGGACAAAGTTTAGCTAC
TTTTTTAGGTTTTATATCCATTTTTACTAATTTGACTTTTGAATTGCTTG
AAATTCAGTAATTCCAAGCCCAGTACTGAAAAGCATATAGTAATTCCCTT
GAGTAGAAATTTCACGTGGGTAGCCCAGTAATCTTGGACTTTTAAATAAT
CTTTTGATTGTCCTCATGTGGTCCACGCTCAGCCTCCTCGACTATCTTTA
TCTGAACTGAACGGAACATTGAAAGGATCAGGGGCTTGAACCGAGAACCC
CTGGTTTGTTTTTCCAACGCCTTAGATCACTTGGCAATCGCTTCTATAAT
TACTCATGATTTCAATCATCTTTATTTTCATTCATTTCCACAGAGCTAAA
GATATTGGCAAACCAAAAGCTGAAGTGGCAGCAGCATTCATCAATAAACG
AATACCAAGTTGCAATATCACACCGTATCTTTTCATGCTATCTATAGCTG
CTGATTTTCTACAAAGATGATAATTTTTAGAATAATTCTATAATTCTATA
TAATTATTCTAACTAGTCATAGCTTTCACTAAATGCCCACGCAGAAGATC
ATGTCATGCACTTGAAGCTTTTAATGCTTTAAAGATTAAAGTAGTAAAAA
TAATCAGGAATAATTGATTGATTTAATTATTGAATGGTTGAAAAAATTAT
ATTCCATTAACACAATACTTGAAGAATTCATATACAACTAGCCGGTACCC
GGCGTCGCACGCCGGTTAAGCTGTAGCTGAACGCACTCAAAGTCCTTTGG
ATGTTGAAGCTGGCTTGAAAAAACGATCAAATGAATAAAAAGATATATTC
AAAGTTTGACTTTAACCCTCCCCCGGAGATCTTTTTCTCGCTTCGCTCGC
ATTAAATAGTTTTCGACAATTTGAGAAAATGTCATGGTAAAGAGGAGTGA
AATGTAGAAATGACAATTCTTTAGGAAAAAGCGGGAAAGCCACAAAGAAT
AGTGCAACTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGCTTGCGCGACAACAAACAACAAAATTTCGA
GATTCCAGTCCAATATCTATGCGTGAAGCTATGAGTGCCTCCTCGTCGCT
GCGCTCCTGCGGGGGCAAAAATTATCATTTTTGTAGAAAATCATTGTTCA
ATCGTTCTCAAGTCAATCCTATTGTTCAGTGACGTCTTGAACGTCTCTGG
TTTTCTTAAAAACATTTGTGACTTCCCAAGTACATAATCAGATCAATCTA
TCAGACCGGTCTTTAGAAAGTCTTCTAAGGGCCGTTGCACATATGACCGG
TAAAAAATTACCAAATGGCCGCTAGTTAATTCAGTGGCAGTTCAGCGGTC
CATAACCTTTATAACAATTTCTATACTAATATATAACACTAACGAGCGGC
CAGAACTGGTCTAACGAGCGGCCATGAGCGTATACGAGCGGCCAGAGGGC
CGTTCGAAATTCGATTTTCCAGAAGGTCTGTAGGCTGATCTAAAACAAAA
CTTTGACCACTACTAGCAGACCGGTCCGATTTTCAGGTACTTTAAGTCGA
TTGGGGAGTCACATCTATGAACCAAAAATGATTGGAATGGTGCGGTGATA
CATGCTTCCTTTTGAACCATCATTTCTTTTGTGAAGTCAGTCTTTTTTCA
GCAATTGATTTTCTTAACTGCCAATATTTTAGTGCATAGATATTACAATA
AAATTCAAGATTTCGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038465XLOC_038465Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061312-exon-scaffold_355-1575043694:376146..376176TCONS_00061312-exon-scaffold_355-1575043694:376146..376176Clytia hemisphaericaexon
TCONS_00061312-exon-scaffold_355-1575043694:374977..375913TCONS_00061312-exon-scaffold_355-1575043694:374977..375913Clytia hemisphaericaexon
TCONS_00061312-exon-scaffold_355-1575043694:374424..374511TCONS_00061312-exon-scaffold_355-1575043694:374424..374511Clytia hemisphaericaexon
TCONS_00061312-exon-scaffold_355-1575043694:372840..372920TCONS_00061312-exon-scaffold_355-1575043694:372840..372920Clytia hemisphaericaexon
TCONS_00061312-exon-scaffold_355-1575043694:371964..372046TCONS_00061312-exon-scaffold_355-1575043694:371964..372046Clytia hemisphaericaexon
TCONS_00061312-exon-scaffold_355-1575043694:371103..371183TCONS_00061312-exon-scaffold_355-1575043694:371103..371183Clytia hemisphaericaexon
TCONS_00061312-exon-scaffold_355-1575043694:367208..367244TCONS_00061312-exon-scaffold_355-1575043694:367208..367244Clytia hemisphaericaexon
TCONS_00061312-exon-scaffold_355-1510915933:376146..376176TCONS_00061312-exon-scaffold_355-1510915933:376146..376176Clytia hemisphaericaexon
TCONS_00061312-exon-scaffold_355-1510915933:374977..375913TCONS_00061312-exon-scaffold_355-1510915933:374977..375913Clytia hemisphaericaexon
TCONS_00061312-exon-scaffold_355-1510915933:374424..374511TCONS_00061312-exon-scaffold_355-1510915933:374424..374511Clytia hemisphaericaexon
TCONS_00061312-exon-scaffold_355-1510915933:372840..372920TCONS_00061312-exon-scaffold_355-1510915933:372840..372920Clytia hemisphaericaexon
TCONS_00061312-exon-scaffold_355-1510915933:371964..372046TCONS_00061312-exon-scaffold_355-1510915933:371964..372046Clytia hemisphaericaexon
TCONS_00061312-exon-scaffold_355-1510915933:371103..371183TCONS_00061312-exon-scaffold_355-1510915933:371103..371183Clytia hemisphaericaexon
TCONS_00061312-exon-scaffold_355-1510915933:367208..367244TCONS_00061312-exon-scaffold_355-1510915933:367208..367244Clytia hemisphaericaexon
TCONS_00061312-exon-scaffold_355-1491911889:376146..376176TCONS_00061312-exon-scaffold_355-1491911889:376146..376176Clytia hemisphaericaexon
TCONS_00061312-exon-scaffold_355-1491911889:374977..375913TCONS_00061312-exon-scaffold_355-1491911889:374977..375913Clytia hemisphaericaexon
TCONS_00061312-exon-scaffold_355-1491911889:374424..374511TCONS_00061312-exon-scaffold_355-1491911889:374424..374511Clytia hemisphaericaexon
TCONS_00061312-exon-scaffold_355-1491911889:372840..372920TCONS_00061312-exon-scaffold_355-1491911889:372840..372920Clytia hemisphaericaexon
TCONS_00061312-exon-scaffold_355-1491911889:371964..372046TCONS_00061312-exon-scaffold_355-1491911889:371964..372046Clytia hemisphaericaexon
TCONS_00061312-exon-scaffold_355-1491911889:371103..371183TCONS_00061312-exon-scaffold_355-1491911889:371103..371183Clytia hemisphaericaexon
TCONS_00061312-exon-scaffold_355-1491911889:367208..367244TCONS_00061312-exon-scaffold_355-1491911889:367208..367244Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_355supercontigscaffold_355:367208..376176 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.33376	2.80994	3.67411	2.91313	0.0740304	0.0141253	0.371467	0	0.700015	1.75534	0	0.625707	0.671115	1.06883	0	5.75565e-10	0.104634	0.538661	0	0.445286	1.33063	0	0.0135831	0	0	0.339617	0	0	0.179385	0.0664857
Blast
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BLAST of TCONS_00061312 vs. Swiss-Prot (Human)
Match: UBA3 (NEDD8-activating enzyme E1 catalytic subunit OS=Homo sapiens GN=UBA3 PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 2.486e-41
Identity = 69/108 (63.89%), Postives = 86/108 (79.63%), Query Frame = 1 
Query:  979 AKFGHISKFLNTNGPMQHPEFEAAPILLDFIRENVNILVIGAGGLGCELLKDLALSGFQNISVIDMDTIDLSNLNRQFLFRAKDIGKPKAEVAAAFINKRIPSCNITP 1302
             ++ H+ KFL  +GP  HP+FE +   L F+ +   +LVIGAGGLGCELLK+LALSGF+ I VIDMDTID+SNLNRQFLFR KDIG+PKAEVAA F+N R+P+CN+ P
Sbjct:   36 GRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVP 143
The following BLAST results are available for this feature:
BLAST of TCONS_00061312 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBA32.486e-4163.89NEDD8-activating enzyme E1 catalytic subunit OS=Ho... [more]
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