TCONS_00061339 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061339
Unique NameTCONS_00061339
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1429

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061339 ID=TCONS_00061339|Name=TCONS_00061339|organism=Clytia hemisphaerica|type=transcript|length=1429bp
TAGCAAACTGAAAACTGTTGTTGACAACCATTGTAGTCTTGAGGAGTTCG
TACGTGGGTTTTTCGTTGTACTTGACGCCTTACGCACTGAAAGAGACGCA
AATGTTGCAAAAGAGTTCCAAAAGCTGAAGCTTTCGCTGCCTCACGATCC
GTGTGTTAAAAGTATTTACGATCATTTAACTTCGTATTCTGCTAACTTTG
TATGTGAGCAGCTAGCAGCAATCGAAAAAACAACAGTACGTAACAGTACA
ATTAACTCGTGTGACTGTTGTTTTTATCTTTCAATGGATCTCCCATGCAG
GCACATCTTTCTCTCGAGATCATTGTCAGGGTGTGTGCCTCTTTTCGATC
CCGTTCTTTGCGNATAACAGTACAATTAACTCGTGCGattgttgttttta
tctttCAATGGATCTCCCATGCAGGCACATCTTTCTCTCGAGATCATTGT
CAGGGTGTGTGCCTCTTTTCGATCCCGTTCTTTGCGCCGTTCGATGGTCG
AAAACTTATTATCGTCAAAGCCAACGGCTGTTTACACAAACAATCAATAA
ATTTGACAAGTTAACGACCACTTCGTCTTCATTCCGCCCTCTAAAAGCCC
TTAACTTTAACGAAAGATATAGAAAGGCAGACGCTGTATGCAAAAATATT
TCGATGTTGGCTTCAGAGCCTGGAGGCACAGAATTTGTCGAGCGAATGAC
CCTTCTTAGAACACTTGAAGACATGTGGCGAAATGGTCAAGAGGTTCATT
TACTTTCGCTACCATTGAAATCAACGGAGAACGAAAATCCTTTTTCATCT
TTCTCTCAAGATCATTGTCAGGGTGACAAAGACAATACCAGTGACAAAAC
TTTGCCTAAAGTCCCGAAGATTCAACCCGGGAACCCAAATGTTACTGGCG
TCATCAACAATTCGCCTTTGAAATCAACGGAGAACGAAAATCCTTTTTCG
TCTATCTCTTCAAATCATTGTCAGGGTCACATAGACAATACCAGTGACAA
AGATTCGCCCAAAGTCACAAAGATTCAGCCTGAGGTAAATCATAACCTAC
CGGCATCGGCAAATGAAGTTTCTCTAAAAGAGTCTTTTCATAACCAAAGC
GACAAGCATATCGACATTCAAGATTTTGATGTCAGTAATGTTAAATTACC
ACCAAGGAAAAAGCCGAGAGGAAGACCAAAAGGACACAATTTAACAGTCA
TCGGAAGACAGAAGAAACGGAAATTGAATAATGGTCGCAAAGATAATACG
AATAACAAAGCTTTGCCCAAAGTCCCGAAGATTCAACCCGAGAACCCAAA
TGTTACTGGCGTCATCAACAATTCGCCTTTGAAATCAACGGAGAAGGAAA
ATCCTTTTTCGTCTTTCTCTCAAGATCATTGTCAGGGTCACATAGACAAT
ACCAGTGACAAAGATTCGCCCAAAGTCAC
Run BLAST on NCBI

transcript from alignment at scaffold_356:55726..59423+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061339 ID=TCONS_00061339|Name=TCONS_00061339|organism=Clytia hemisphaerica|type=transcript|length=3698bp|location=Sequence derived from alignment at scaffold_356:55726..59423+ (Clytia hemisphaerica)
TAGCAAACTGAAAACTGTTGTTGACAACCATTGTAGTCTTGAGGAGTTCG
TACGTGGGTTTTTCGTTGTACTTGACGCCTTACGCACTGAAAGAGACGCA
AATGTTGCAAAAGAGTTCCAAAAGCTGAAGCTTTCGCTGCCTCACGATCC
GTGTGTTAAAAGTATTTACGATCATTTAACTTCGTATTCTGCTAACTTTG
TATGTGAGCAGCTAGCAGCAATCGAAAAAACAACAGTACGTAACAGTACA
ATTAACTCGTGTGACTGTTGTTTTTATCTTTCAATGGATCTCCCATGCAG
GCACATCTTTCTCTCGAGATCATTGTCAGGGTGTGTGCCTCTTTTCGATC
CCGTTCTTTGCGNATAACAGTACAATTAACTCGTGCGattgttgttttta
tctttCAATGGATCTCCCATGCAGGCACATCTTTCTCTCGAGATCATTGT
CAGGGTGTGTGCCTCTTTTCGATCCCGTTCTTTGCGCCGTTCGATGGTCG
AAAACTTATTATCGTCAAAGCCAACGGCTGTTTACACAAACAATCAATAA
ATTTGACAAGTTAACGACCACTTCGTCTTCATTCCGCCCTCTAAAAGCCC
TTAACTTTAACGAAAGATATAGAAAGGCAGACGCTGTATGCAAAAATATT
TCGATGTTGGCTTCAGAGCCTGGAGGCACAGAATTTGTCGAGCGAATGAC
CCTTCTTAGAACACTTGAAGACATGTGGCGAAATGGTCAAGAGGTTCATT
TACTTTCGCTACCATTGAAATCAACGGAGAACGAAAATCCTTTTTCATCT
TTCTCTCAAGATCATTGTCAGGGTGCGTGCCTCATTTTTATTCTGTTCTT
TTGCGCCGTTCACTGGTTGAAGACTTATTTCCATCAAAGTCAACGGCTGT
TTACTTTTTCTAAATTTTATGATTTGAAAATATCCCCAGTGCGATTATCT
TTTCTACAAACACACAATCACAGATTTATTTGTGCTTTAAAAGTTTTACT
GACATCTCGTTTGATATGGACTAATTTGATAGAGCTTAAGATTGTATTGA
TTACACCATTATGTGTTAAGGGGTAATGTTAATACATTTAAAACAAAATT
TTCTATGAATGTTTAGGTGACAAAGACAATACCAGTGACAAAACTTTGCC
TAAAGTCCCGAAGATTCAACCCGGGGTAAGTCATAATCTATCGTCAAAAT
GAATTTTCTTTAAAGGAGTAAACCGATGCAATTTATATTGAGAGTTGTTT
ATTATTAATTGAAGAACATTCTCCAGATACAAAGATGATGGTGACAGTAA
AGCCAAAGCCTGATGTATCTCTGAATATTATTAAATGCTGCACGCAGACT
GACCCTCGACTTTCTTTTTCAGAACCCAAATGTTACTGGCGTCATCAACA
ATTCGCCTTTGAAATCAACGGAGAACGAAAATCCTTTTTCGTCTATCTCT
TCAAATCATTGTCAGGGTGCGTGCCTCTCTTTTTTATTCTGTTCTTTGCG
CCGTTCGCTGGTCGAAGACTTATTTCTATCAAAGTCCACGGCTGTTTACT
ATTTCTAAATTTTATGATTTGAAAATATCCTCAGTGCGATTATCTTTTCA
ACAAACACACAATCACATATTTTAATTCGTACTTTTTAAAGTTTTACTGA
CATCTCGTTTGATATGGACTAATTTGATAGAACTTGTGATTGTATTAATT
ACACCATTATGTGTTAAGGGGTAAAGTTAATACATTTAAAACAAAATTTT
CTATGAATGTTCAGGTCACATAGACAATACCAGTGACAAAGATTCGCCCA
AAGTCACAAAGATTCAGCCTGAGGTAAATCATAACCTACCGGCATCGGCA
AATGAAGTTTCTCTAAAAGAGTCTTTTCATAACCAAAGCGACAAGCATAT
CGACATTCAAGATTTTGATGTCAGTAATGTTAAATTACCACCAAGGAAAA
AGCCGAGAGGAAGACCAAAAGGACACAATTTAACAGTCATCGGAAGACAG
AAGAAACGGAAATTGAATAATGGTATTTTGcatgttgtttttttcgctAG
TTTTTACCActatattactttttctaaattttattgttttaaaatatCCT
GGTCgcgattatcttttcaacaaacacaCGATCACAAATTTAAttcgagt
tttttgaaattttactgagagctaatttgaaatagactaaTCTGATGGAA
CTTAAGGTTGTATTATTACACCATTGTTTTAAGGGGTAAAGATGAAAcac
ttttaattctttttttctatGAATGTTCAGGTCGCAAAGATAATACGAAT
AACAAAGCTTTGCCCAAAGTCCCGAAGATTCAACCCGAGGTAAGTCATAA
TCTATCGacaaaatgaattttctttaaaggAGTAAACCGATGCAATTTAT
ATTGAGNAACCCGAGGTAAGTCATAATCTATCGacaaaatgaattttctt
taaaggAGTAAACCGATGCAATTTATATTGAGAGTTGTTTATGTTAAATT
GAAGAACATTCTCCAGATACAAAGCTGATGGTGGCAGTAAAGCCAAAGCC
TGATGTTTCTCTGAATATTATTAAATGCTGCATAAACTGACCCTCGACTT
TATTTTTCAGAACCCAAATGTTCCTGGCGTCATCAACAATTCGCCTTTGA
AATCAACGGAGAAGGAAAATCCTTTTTCGTCTTTCTCTCAAGATCATTGT
CAGGGTGCGTGCATGCCTCTTTTTTATTCTGTTCTTTTGCGCCCTTTACT
GGTCGAAGACTTATTTCCATCAAAGTCAACGGCtgtttactttttctaaa
ttatatgatttgaaaatatcTCCAGTgcgattatcttttcaacaaacaca
CAAATAACAGGTTTTAAGTTGTGCTTTTTAAAGTTTAACTGGCATCTCTT
TTGAAATGGACTAATTTGATAGAGCTTAAGATTGTATTAATTACAGCATT
ATGTGTTAAGGGGTAAAGTTAatacatttaaaacaaattttctatcaatg
tTCAGGTCACATAGGCAATACCAGTGACAAAAATTTGCCCAAAGTCCCGA
AGATTCAACCCGAGGTAAGTCATAATCTATAGacaaaatgaattttcttt
aaaggAGTAAACCGATGCAATTTATATTGAGAGTTGTTTATTCTAAATTG
AAGAACATTCTCCAGATACAAAGCTGATGGTGACAGTAAAGCCAAAGCCT
GATGTTTCTCTGAATATCATTAAATGCTGCATAAACTGACCCTCGACTTT
ATTTTTCAGAACCCAAATGTTACTGGCGTCATCAACAATTCGCCTTTGAA
ATCAACGGAGAAGGAAAATCCTTTTTCGTCTTTCTCTCAAGATCATTGTC
AGGGTGCGTGCATGCCTCTTTTTTATTCTATTCTTTTGCGCCCTTTACTG
GTCGAAGACTTATTTCCATCAAAGTCAACGGCtgtttactttttctaaat
tatATGATTTGGAAATATCTCCAGTgcgattatcttttcaacaaacacaC
AAATAACAGGTTTTAAGTCGTGCTTTTTAAAGTTTAACTGGCATCTCTTT
TGAAATGGACTAATTTGATAGATTTTAAGATTGTATTAATTACAGCATTA
TGTGTTAAGGGGTAAAGTTaatacatttaaaacaaaattttctatgAATG
TTCAGGTCACATAGACAATACCAGTGACAAAGATTCGCCCAAAGTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038483XLOC_038483Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061339-exon-scaffold_356-1491911889:55726..56547TCONS_00061339-exon-scaffold_356-1491911889:55726..56547Clytia hemisphaericaexon
TCONS_00061339-exon-scaffold_356-1510915933:55726..56547TCONS_00061339-exon-scaffold_356-1510915933:55726..56547Clytia hemisphaericaexon
TCONS_00061339-exon-scaffold_356-1575043694:55726..56547TCONS_00061339-exon-scaffold_356-1575043694:55726..56547Clytia hemisphaericaexon
TCONS_00061339-exon-scaffold_356-1491911889:56842..56900TCONS_00061339-exon-scaffold_356-1491911889:56842..56900Clytia hemisphaericaexon
TCONS_00061339-exon-scaffold_356-1510915933:56842..56900TCONS_00061339-exon-scaffold_356-1510915933:56842..56900Clytia hemisphaericaexon
TCONS_00061339-exon-scaffold_356-1575043694:56842..56900TCONS_00061339-exon-scaffold_356-1575043694:56842..56900Clytia hemisphaericaexon
TCONS_00061339-exon-scaffold_356-1491911889:57098..57191TCONS_00061339-exon-scaffold_356-1491911889:57098..57191Clytia hemisphaericaexon
TCONS_00061339-exon-scaffold_356-1510915933:57098..57191TCONS_00061339-exon-scaffold_356-1510915933:57098..57191Clytia hemisphaericaexon
TCONS_00061339-exon-scaffold_356-1575043694:57098..57191TCONS_00061339-exon-scaffold_356-1575043694:57098..57191Clytia hemisphaericaexon
TCONS_00061339-exon-scaffold_356-1491911889:57490..57747TCONS_00061339-exon-scaffold_356-1491911889:57490..57747Clytia hemisphaericaexon
TCONS_00061339-exon-scaffold_356-1510915933:57490..57747TCONS_00061339-exon-scaffold_356-1510915933:57490..57747Clytia hemisphaericaexon
TCONS_00061339-exon-scaffold_356-1575043694:57490..57747TCONS_00061339-exon-scaffold_356-1575043694:57490..57747Clytia hemisphaericaexon
TCONS_00061339-exon-scaffold_356-1491911889:58006..58064TCONS_00061339-exon-scaffold_356-1491911889:58006..58064Clytia hemisphaericaexon
TCONS_00061339-exon-scaffold_356-1510915933:58006..58064TCONS_00061339-exon-scaffold_356-1510915933:58006..58064Clytia hemisphaericaexon
TCONS_00061339-exon-scaffold_356-1575043694:58006..58064TCONS_00061339-exon-scaffold_356-1575043694:58006..58064Clytia hemisphaericaexon
TCONS_00061339-exon-scaffold_356-1491911889:58985..59078TCONS_00061339-exon-scaffold_356-1491911889:58985..59078Clytia hemisphaericaexon
TCONS_00061339-exon-scaffold_356-1510915933:58985..59078TCONS_00061339-exon-scaffold_356-1510915933:58985..59078Clytia hemisphaericaexon
TCONS_00061339-exon-scaffold_356-1575043694:58985..59078TCONS_00061339-exon-scaffold_356-1575043694:58985..59078Clytia hemisphaericaexon
TCONS_00061339-exon-scaffold_356-1491911889:59381..59423TCONS_00061339-exon-scaffold_356-1491911889:59381..59423Clytia hemisphaericaexon
TCONS_00061339-exon-scaffold_356-1510915933:59381..59423TCONS_00061339-exon-scaffold_356-1510915933:59381..59423Clytia hemisphaericaexon
TCONS_00061339-exon-scaffold_356-1575043694:59381..59423TCONS_00061339-exon-scaffold_356-1575043694:59381..59423Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_356supercontigscaffold_356:55726..59423 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.32314	0.250487	8.63832e-05	0.676132	2.03647	0.67407	1.0977	0	0	0.0820406	4.73245e-06	0	0	0	0	0	0	0	0.7478	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061339 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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