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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061420 ID=TCONS_00061420|Name=TCONS_00061420|organism=Clytia hemisphaerica|type=transcript|length=1029bp TATTAATGACTGATGCAATAAGAGACATGACATACATGAACAACACTTTG ATACCAAAACAAAATAAACTCGATGTTGAACGAATAcaaatattcttttt aaaatcttGTTATTACTACTGACATAAGACTTTTCTTTACATGTACGATT GGTGATCAGAGGGTCtgagaaacaaacaaaacataaagaaactttcaaat ttgaACGAAAAACCGAGATTTCTTTTGAAGTACATGTTATTGCTGGTTTA TAGAAACTCTAAGTTACATTAGCTATAAAggttgaaacaaaaaaatggat TCCGCACATTGTGATGATCGCAATTTGGCACACAGTGCTACTGGTAGAAA TGTCACCAACAAAGTTGACAGCGTCGTTGAGACAGCGAAACTTAAAGAAG ACCATGACAAGCAGATTCAAAAATTGACATTGGAAAACAAGATTAAGttt cttgaatctgaaaataaCCATCGAATGAAAATCATGCAGCTTGAAAAGGA CAATCAATCGTTAACTCATGAGCTGGAACTCTTGAAGTTGAAGACCTCGC ATGAACAAGAGGCTAAGAAAGTCGTCGTTGATCgtgaaatggagaaaaaa atgctGAAACAGCAAAATGAATTCCAAAACAAACTTACTGAAAAAGACAA GGAGCTAGCTGGAAAAGACAAGGAACTAGCTGAAAAAGACAAGGATATGG CGGCAAAAGAAAATGAGTTTAAATTGAAATTGGCTGAAGTGGAGAACGCG AATAAGCTGAAAATTGCAGAACATGAAAACGTAAACAAATTGAaacttct tgaaaaagaaaaagaaatggcAGACAAAGTGAACgagttgaatttgaaaA TCATCCAGAAGAAGCAAGATGGAGCCGAAGCAAGAGATATTACCAGGACT GAGAAGTTGACTTGGGGAGCTGATAAGTTCTTTGAAAGTAAACCAGGCGA GCTCAATTTGTTTGCATCGTATCAAGATTGGTATGAAGAAATCAGTTCGT TGCTACACGATGGAGAGGAAGAGATTGTT Run BLAST on NCBI protein sequence of TCONS_00061420-protein >TCONS_00061420-protein ID=TCONS_00061420-protein|Name=TCONS_00061420-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
MDSAHCDDRNLAHSATGRNVTNKVDSVVETAKLKEDHDKQIQKLTLENKI KFLESENNHRMKIMQLEKDNQSLTHELELLKLKTSHEQEAKKVVVDREME KKMLKQQNEFQNKLTEKDKELAGKDKELAEKDKDMAAKENEFKLKLAEVE NANKLKIAEHENVNKLKLLEKEKEMADKVNELNLKIIQKKQDGAEARDIT RTEKLTWGADKFFESKPGELNLFASYQDWYEEISSLLHDGEEEIV Run BLAST on NCBI transcript from alignment at scaffold_358:887061..894905+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061420 ID=TCONS_00061420|Name=TCONS_00061420|organism=Clytia hemisphaerica|type=transcript|length=7845bp|location=Sequence derived from alignment at scaffold_358:887061..894905+ (Clytia hemisphaerica) TATTAATGACTGATGCAATAAGAGACATGACATACATGAACAACACTTTG
ATACCAAAACAAAATAAACTCGATGTTGAACGAATAcaaatattcttttt
aaaatcttGTTATTACTACTGACATAAGACTTTTCTTTACATGTACGATT
GGTGATCAGAGGGTCtgagaaacaaacaaaacataaagaaactttcaaat
ttgaACGAAAAACCGAGATTTCTTTTGAAGTACATGTTATTGCTGGTTTA
TAGAAACTCTAAGTTACATTAGCTATAAAggttgaaacaaaaaaatggat
TCCGCACATTGTGATGATCGCAATTTGGCACACAGTGCTACTGGTAGAAA
TGTCACCAACAAAGTTGACAGCGTCGTTGAGACAGCGAAACTTAAAGAAG
ACCATGACAAGCAGATTCAAAAATTGACATTGGAAAACAAGATTAAGttt
cttgaatctgaaaataaCCATCGAATGAAAATCATGCAGCTTGAAAAGGA
CAATCAATCGTTAACTCATGAGCTGGAACTCTTGAAGTTGAAGACCTCGC
ATGAACAAGAGGCTAAGAAAGTCGTCGTTGATCgtgaaatggagaaaaaa
atgctGAAACAGCAAAATGAATTCCAAAACAAACTTACTGAAAAAGACAA
GGAGCTAGCTGGAAAAGACAAGGAACTAGCTGAAAAAGACAAGGATATGG
CGGCAAAAGAAAATGAGTTTAAATTGAAATTGGCTGAAGTGGAGAACGCG
AATAAGCTGAAAATTGCAGAACATGAAAACGTAAACAAATTGAaacttct
tgaaaaagaaaaagaaatggcAGACAAAGTGAACgagttgaatttgaaaa
tcaaagtgTGGGAAACTCTCCATAATAAGACTGAAGTGAATGACGTAGCT
TCAGGCGTGAACATCATTCAGAAGAAGCAAGATGGAGCCCAAGCAAGGAA
TATTACCAGGGCTGATAAGTTGGCTTGGGGAGCTGATAAGTTCTTTGAAA
GTAAACCAATCAAGCTCAATTTGTTTGCATCGTATCAAGATTGGTATGAA
GAAATCAGTTCGTTGCTACATAGAGAGAAAGAGATTGTTTGGAGTAGTGC
ATCGAAATATGTGTTCGTGAAAAGAGACTGTGGAGAATATTTCGAGAATT
TACGGATGATCACACACAGAAAGGGACGAGCGAGACAGAATCATTCTGAT
ATCTTTTACATTGAAGATGATGaaaaacaattttggaaaaaaacgaCATT
TATGTTACTCCACCCATTACAGCAtaataaaagtttgaaaatggtTGAAT
GGTCGACAGGAAAAGACCATGAACAATGGAAAGTCTCCAATGTTTCAAAC
GACTTTTATCATGGTAGGGAaaagtctgccattttgtttggaATTTTTGA
TAGAAACGAGGATTAATTTCACAAAAAGTCCTCAAGAAGGATTTCTATTG
TGAATTTTGACAACATAATAACATAGTCATGAAAAGATATTAATATTGAT
tactttaattttcgcgcatctTGTAATTTCTGATACATTTTTTCAGTGTT
TTCGCAGGAAAATATACATAAATATAAAGAAGACAAAATAGGCGTGGAAT
CAAAAGTCCCAGAGGTATATTTAACATAATTAGAGGGCTCTTATTAGTTT
CTTTAAAAGAGcgcaaatatgttattcttGCAGATTTAAAGCTTAACCTT
TAATTTTCGTGCAGGATAACGcgcttatctgatattccgatggcggattg
gcggccgttcaccttaaagctctaaaggagagggccaatttcccatcgga
gatgATTGATAGTCGGCCTTTAATGTCccgcatccccagtcgggttcaac
tacgTTTGAGCGTAAACCAAATATTTCGATTAGACCCGTCAATCCACGAA
ATTGAGGACTTGGTTACCAGGCCTGCCACTGAAAAATCATTGACACGGTC
ttgcgaaattccgtaatctaaaccttccagatgttgaaacttttcccgac
cttcagtaGGGACCgcgaaagacgggggtaaaatggttggaatcgaccaa
aatgttgtttttaggttttagacCACCTATAACCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaatattcaaaatc
tgatgattccagcggaaagagcatgaaatgctgataaaaattgaggtata
aaacatgccttgaaaatcttcctatcaaaagttatggacgttgaaagttt
tttggtgacgtcatcataagcctttNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCAAATCAACGCAGCG
TTCTCCCTTCAGGAGCACAGTGTACaaccaactaatttttttggatgttt
taagccttcctatgTTGTTTAGACTTAAGCATCNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNatgtataaaacactaaatttggtcaactagtt
ccgttattacgggattttaggttttgcctggaaaggcttatgatgacgtc
atcacaaaactttaaacctcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGGAAGATtttgaaggcatgttttatacctc
gattttcatcagcatttcatgctctttccgctgataccatcagattttaa
atattttcaaaaaaataaatttttgctgagccacctgatgacgtcatctg
gcaggtggccaggtggcaaaatttggtgtcactgtttaaaattaagtttt
agaccctctaaggttcatctgtgccaaatttcatgctttaatcaccatct
gaagtatttttgtgctaacagacctcactaaaGGAATCGctaaattcaat
ccgtcgtcaaaaatacggcgcatattttaaggcttcacttttttcttgcc
tgagaaaggtcaaagattcgattctagcaGTTCGGaattatacttcattg
gttttttcttttctattttctggatacccaggctgtTATAAACAAAGCGG
GTCGATTATacagatttcaaaaatataatattaagGTGATATTGCTGCGT
TTGTAGAAAACCCAAAAGTGGATTTATAAACATCATTCTAAAATTTGGAA
CGACATCAAGAAAAAGCTCTAATCTCAATTATCGAAAACCAGCCATTTCG
AAATTCTAATGGAAATATGATACAACAAATAACATTTTAAATAAACACGA
ACAAAATAAAATGCGAGAAGAGGCGCAcaagaaaaaataactttctTCGT
TTTCAATAGGAGgacatttaaaggttttatttttacataagttttcccgt
ttcatatcagtcacatatttcatatcaggacagtgtctgcctattgtttt
TATTATGCTGATAGaagcaaaaaatgattttcttttccttttttttgacc
aatcttgctccacatccgtgtcaatccaatgtgaaaaagcttgtaagtta
aaattgatgagtaagcaaacgatatcacgcttattaaaaatcaaaacctt
tAACAGCGTCGCGATAGCTTTTCGTGAACTAGAAAGAATAAAAAGGGAGA
GAAAAAGATGGCTAGAAATCTTGCCCATAATACCAACGGAACAGACTGGT
ACACGGAATTTAACTGTAAAAGGACAATCAATCGTTGACTCATGAGCTGG
AGCTCTTGAAATTGAAGACCTCACATGAACAAGAGGCTAAGAAAGTTGTG
GTTGATCGTGAAATGGAGAGAGAAATGCTGAAACAACAAAATGAATTCCA
CTTTGCTAGCGTAGCCGGTCAGAGCATCTTACTAGTATACATAATAATAT
ATAGAGAAATACCATTCCCTTGAGAacgaaacatgtcgggaaaaatcaaa
atataatagccgcattctttttcaccgtccatcataataattttataaat
atgaatatttttctagACTTTGCACATATAtactatataatattttcagc
cgaagagccaaatgtaaattttggagattgaaatataccattattattat
tgttattattattaaaacaaACTAACTGAAAAAGACAAGGAAATGGCGGC
AAAAGACAAAGAACTAGCTGGATGGAACGTTTTTCTCTcacaaaaacaaa
ctatataacaagaacataaggcttagaTGGCCAAAacgttaaaaacaagt
taagaactttGGAGACTTTAAAACCCCCGATTTCTtcagaaaatggacaa
aaagactcagaaaacggtgaaaataagaacatgttgagaacctctttagg
ctttaaaactcaaaaagataagAACAACCAAAGGCTTTAAAGATATtgga
agttcttataaaaaacatgtagaaaATCTCTCCACACTCAtaatttgcca
ttttttaatatttcgttctaactgagaaaaatacaaaagcTAGCCTGTCT
ATGGTCAAATTCACTTGGATCGTCTGTATATTAAATTTAACGAGGCAACG
ATTGCGCTTGCGCACCACAATAATAACTCACAGCTAAGAACAAGCCAACC
CTGGGTTCACAGTGGTCTAGGAGCATTATTGTTATTAGTGCCGGCATGTA
ACGAAAGAAAGAGAGTAAAaagtctctctctctctcaattCTTGTAAGAA
CCCCTTGCATTCCTCTTAAAGACATGACACACATGAACAACATTTAGAGA
GAATTTGATACCAGaacaaaacaagacgacttgaagtcgaaaatttcgcc
taaagtttaaactgcatgggaaaaacaagaagtagggATGGAAGTCAATC
TGAAATCTACATAGTTCACATTGACGAAACATTTTTACAAGAAAagcgag
gctcaaaatcgctaaaaaataagaccaatttaagaacaatggttgtttaa
ttcttaagaactaataaccgaaGGGCCATACcatgcctatcgtaatactt
tcgctaggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaattcagaaaagag
acgcaacttcaccccttcgattctttttatttggagcttgattttttgta
tatgggtctgttttcaacgactagtttactagtctatcgctaggcgaaat
taataaactCGATGTTGAACAAATAtaaatattctttttaaaatcttGTT
ATTACACTGATATAACACTTTTCTTTGTAGGTACGATTATCAAGTACTAT
CAAAGGatttgataaacaaacaaaacataaagaaaatttcaagtttgaGC
GAAAAACCGAGATTTCTTTCGAAGTACATGTTATTGCTGGTTATATAGAA
ACTATAGAAACTCTAAGTTACATTAGCTAAGGTTGAAACGAAAAAATGGA
TTCTGCAAACTTTGACGATCGCAATTTGGCACACAGTGCTGCTGGCAGGA
ATGTCACCAACAAAGTTGCCAACAGCGTCGTTGAAATCGCGAAACTTAAA
GAAGACCATGACAAGCAGATTCAAAAATTGACATTTGAAAACAAGATCAA
ATTTCTTGAATCTGAGAATAACCACCAAATGAAAATCATGCAGCTCGAAA
AGAACAATCAATCGTTGACTCATGAGCTGGAGCTCTTGAAGTTGAAGACC
TCGCATGAACAAGAGGCTAAGAAAGACGTGGTCGACCGTGAAATGGAGAG
AGAAATGCTGAAacagcaaaatgaatttcaaaacaaacttactGAAAAAG
ACAAAGAACTAGCTGGGAAAGACAAGGAAATGATTGTCAAGGAAAGcgag
ttcaaactgaaaatgaaagaattggAGATTGTCCATGCAAACCAACTGAC
TGCAAAACAAAACGAATGTGAGCTGAAATTGATTCAAAAAGTTCAGGAAA
TGATTGCCAAAGAAAGTGAGTTTAAATTGAAATTGGCTGAAGTGGAGAAT
GCGAATAAGCTGAAAATTGCAGAACATGAAAACGTAAACAAATTGAaact
tcttgaaaaagaaaaaggaatggCAGACAAAGTGAACgagttgaatttga
aaatcaaagagTTGGAAACTCTacacaataaaacaaaaatggaaGACGTG
GCTTCAGGTGTGAACATCATCCAGAAGAAGCAAGATGGAGCCGAAGCAAG
AGATATTACCAGGACTGAGAAGTTGACTTGGGGAGCTGATAAGTTCTTTG
AAAGTAAACCAGGCGAGCTCAATTTGTTTGCATCGTATCAAGATTGGTAT
GAAGAAATCAGTTCGTTGCTACACGATGGAGAGGAAGAGATTGTT Coding sequence (CDS) from alignment at scaffold_358:887061..894905+ >TCONS_00061420 ID=TCONS_00061420|Name=TCONS_00061420|organism=Clytia hemisphaerica|type=CDS|length=1470bp|location=Sequence derived from alignment at scaffold_358:887061..894905+ (Clytia hemisphaerica) atggatTCCGCACATTGTGATGATCGCAATTTGGCACACAGTGCTACTGG TAGAAATGTCACCAACAAAGTTGACAGCGTCGTTGAGACAGCGAAACTTA AAGAAGACCATGACAAGCAGATTCAAAAATTGACATTGGAAAACAAGATT AAGtttcttgaatctgaaaataaCCATCGAATGAAAATCATGCAGCTTGA AAAGGACAATCAATCGTTAACTCATGAGCTGGAACTCTTGAAGTTGAAGA CCTCGCATGAACAAGAGGCTAAGAAAGTCGTCGTTGATCgtgaaatggag aaaaaaatgctGAAACAGCAAAATGAATTCCAAAACAAACTTACTGAAAA AGACAAGGAGCTAGCTGGAAAAGACAAGGAACTAGCTGAAAAAGACAAGG ATATGGCGGCAAAAGAAAATGAGTTTAAATTGAAATTGGCTGAAGTGGAG AACGCGAATAAGCTGAAAATTGCAGAACATGAAAACGTAAACAAATTGAa acttcttgaaaaagaaaaagaaatggcAGACAAAGTGAACgagttgaatt tgaaaATCATCCAGAAGAAGCAAGATGGAGCCGAAGCAAGAGATATTACC AGGACTGAGAAGTTGACTTGGGGAGCTGATAAGTTCTTTGAAAGTAAACC AGGCGAGCTCAATTTGTTTGCATCGTATCAAGATTGGTATGAAGAAATCA GTTCGTTGCTACACGATGGAGAGGAAGAGATTGTTatggatTCCGCACAT TGTGATGATCGCAATTTGGCACACAGTGCTACTGGTAGAAATGTCACCAA CAAAGTTGACAGCGTCGTTGAGACAGCGAAACTTAAAGAAGACCATGACA AGCAGATTCAAAAATTGACATTGGAAAACAAGATTAAGtttcttgaatct gaaaataaCCATCGAATGAAAATCATGCAGCTTGAAAAGGACAATCAATC GTTAACTCATGAGCTGGAACTCTTGAAGTTGAAGACCTCGCATGAACAAG AGGCTAAGAAAGTCGTCGTTGATCgtgaaatggagaaaaaaatgctGAAA CAGCAAAATGAATTCCAAAACAAACTTACTGAAAAAGACAAGGAGCTAGC TGGAAAAGACAAGGAACTAGCTGAAAAAGACAAGGATATGGCGGCAAAAG AAAATGAGTTTAAATTGAAATTGGCTGAAGTGGAGAACGCGAATAAGCTG AAAATTGCAGAACATGAAAACGTAAACAAATTGAaacttcttgaaaaaga aaaagaaatggcAGACAAAGTGAACgagttgaatttgaaaATCATCCAGA AGAAGCAAGATGGAGCCGAAGCAAGAGATATTACCAGGACTGAGAAGTTG ACTTGGGGAGCTGATAAGTTCTTTGAAAGTAAACCAGGCGAGCTCAATTT GTTTGCATCGTATCAAGATTGGTATGAAGAAATCAGTTCGTTGCTACACG ATGGAGAGGAAGAGATTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00061420-exon-scaffold_358-1491911889:887061..887909 | TCONS_00061420-exon-scaffold_358-1491911889:887061..887909 | Clytia hemisphaerica | exon |
TCONS_00061420-exon-scaffold_358-1510915933:887061..887909 | TCONS_00061420-exon-scaffold_358-1510915933:887061..887909 | Clytia hemisphaerica | exon |
TCONS_00061420-exon-scaffold_358-1575043694:887061..887909 | TCONS_00061420-exon-scaffold_358-1575043694:887061..887909 | Clytia hemisphaerica | exon |
TCONS_00061420-exon-scaffold_358-1491911889:894726..894905 | TCONS_00061420-exon-scaffold_358-1491911889:894726..894905 | Clytia hemisphaerica | exon |
TCONS_00061420-exon-scaffold_358-1510915933:894726..894905 | TCONS_00061420-exon-scaffold_358-1510915933:894726..894905 | Clytia hemisphaerica | exon |
TCONS_00061420-exon-scaffold_358-1575043694:894726..894905 | TCONS_00061420-exon-scaffold_358-1575043694:894726..894905 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_358 | supercontig | scaffold_358:887061..894905 + |
Blast
The following BLAST results are available for this feature:
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