TCONS_00061691 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061691
Unique NameTCONS_00061691
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1807

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061691 ID=TCONS_00061691|Name=TCONS_00061691|organism=Clytia hemisphaerica|type=transcript|length=1807bp
ATGGAATCAAAACTGGTCAGAACCATTTCATTGCTGGTCATTTCAATCTT
TTGCGTGATTACTTCAATATCGGCACTGGCTATAAACGAAAGCGTTGGGC
AAACAGTTAAAGACAGTTCAATTCGAACTAGAATTCCAACTGAGATACTG
ATAACAACTTCAATGATGTCAAGCAGTAGCCAGACAATATCAGATTTACC
ATATTCGGCTGATTCCAATACCATGGAGGATTCTTTGACGTCTTCATCCC
TATTCACATTATTCACAACCTCTCAATATCACCAAACAGTTTCACTTGAC
TCCTCGACGACCTCGACAGATCCATCACCAACAACTAACACATGGTCAAT
TCAACCATCAGTATACGAAATGCAAGTCCAACCATCGTCCAATATTAAAA
CCAAAGGACTACATGAACAAACTGTGCATCCAGGTTACCATGATGCGATA
GGCCTTACAACAAAATCAATCGCTACAGAAGGCATTTTGTCTGCGTCTAT
AACCAGCCAGTTTAGTACTTTGACCAGAACTACAACAGAGCATTCTAGAG
CTACAGGAGATTCTATTAGAAATATGTCAATGTCACTCAGAACTACAACA
ATGACGTCTCTTAGAACTAAAATAGATTCTGGTGAATCTTCAACAGTTTC
TTCTGGAGTTACAACAGATTCTCTTGGAACTAAAACAGAGTATTTTGAAA
CTGCAACATTTTCTCCTGGTACTACATCAAAACCACCCTGGACCTCAACA
GATTCTCCTAAAACGGCAACAAATTCTCCTGGAGGTACAACAGAGTTTTC
AGAAACTACAACGTCGTCTTTTGGATCTAAAACTGAGTATCCTGAAACTG
CAACATTTTCTTATGGAACTACAACAGAGTCTTCTAGGACTGTAACAGAG
TCTCTCAGAACTACAACAGAGTCTCCTAGAACTACAACAGAGTCTCCTAG
AACTACAACAGAGTCTCCTGGAACTACAACAGAGTCTCCTGGAGCTGCAA
CAGAGCCTCCTGAAACTACAGCAGAGCCTCCTGGAACTTCAGCAGAGCCT
CCTGGAACTACAACAAAGTCTCTTGGAGCTGCAACAGAGAATCCTGGAAC
TACAACAGAATTTCCAAAAACTACAACGGATTCTATTAAAACCACAAAAG
AGCTTCTTGGAACTAAGAAAAATGCTCCTGAAACTAAAACATATAGCCTC
GGAACTACAGCACAATCCGGAAGTAGTGTCAAGACAACAGAGTCTACTGG
AACTAGTGCAATGGAAATTGAAACATCCACTACAACAAACCTTCCCACTA
CATCTTCAGCCTCATCTACAATTGAAATTGATAATACAACAAGACCAAAG
GcaactgaaaattcaaaattccaaTCACATTCATCAACAAAATCTGTAGT
GGTTTCTACCACTAAACAAATAATATCTTATAACAACAGTAATAACCAAA
ACAAAACAGTGACAACAACACCAACAACTAAACTTAATCCCGAACCGGAG
AATAAACTTCCGACCACACCTATGGatgcttatgatttttttcttcttca
agtaAAACTTTTCAGAAATGAATCACAGAACTGTACAGTGTTTGTGAGTA
ATTTTACGGGCAATCAAACCTTCTTCAATGCCACGTGGTCAATGTGTTAT
GAACCTCCATCAGAACCTGAGCCACCGCAATGGTACGAAGATCCACAGAT
CTACTATTATGGTGGCGGTGGCATTATCTTCCTTATATTTCTCTTCGCTA
TGAAAAGTCTATGCGCATATTGCAGTAAGTACAGCAGTGATTACTTGTTG
CCACGCT
Run BLAST on NCBI

transcript from alignment at scaffold_36:1337860..1341472-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061691 ID=TCONS_00061691|Name=TCONS_00061691|organism=Clytia hemisphaerica|type=transcript|length=3613bp|location=Sequence derived from alignment at scaffold_36:1337860..1341472- (Clytia hemisphaerica)
ATGGAATCAAAACTGGTCAGAACCATTTCATTGCTGGTCATTTCAATCTT
TTGCGTGATTACTTCAATATCGGCACTGGCTATAAACGAAAGCGTTGGGC
AAACAGTTAAAGACAGTTCAATTCGAACTAGAATTCCAACTGAGATACTG
ATAACAACTTCAATGATGTCAAGCAGTAGCCAGACAATATCAGATTTACC
ATATTCGGCTGATTCCAATACCATGGAGGATTCTTTGACGTCTTCATCCC
TATTCACATTATTCACAACCTCTCAATATCACCAAACAGTTTCACTTGAC
TCCTCGACGACCTCGACAGATCCATCACCAACAACTAACACATGGTCAAT
TCAACCATCAGTATACGAAATGCAAGTCCAACCATCGTCCAATATTAAAA
CCAAAGGACTACATGAACAAACTGTGCATCCAGGTTACCATGATGCGATA
GGCCTTACAACAAAATCAATCGCTACAGAAGGCATTTTGTCTGCGTCTAT
AACCAGCCAGTTTAGTACTTTGACCAGAACTACAACAGAGCATTCTAGAG
CTACAGGAGATTCTATTAGAAATATGTCAATGTCACTCAGAACTACAACA
ATGACGTCTCTTAGAACTAAAATAGATTCTGGTGAATCTTCAACAGTTTC
TTCTGGAGTTACAACAGATTCTCTTGGAACTAAAACAGAGTATTTTGAAA
CTGCAACATTTTCTCCTGGTACTACATCAAAACCACCCTGGACCTCAACA
GATTCTCCTAAAACGGCAACAAATTCTCCTGGAGGTACAACAGAGTTTTC
AGAAACTACAACGTCGTCTTTTGGATCTAAAACTGAGTATCCTGAAACTG
CAACATTTTCTTATGGAACTACAACAGAGTCTTCTAGGACTGTAACAGAG
TCTCTCAGAACTACAACAGAGTCTCCTAGAACTACAACAGAGTCTCCTAG
AACTACAACAGAGTCTCCTGGAACTACAACAGAGTCTCCTGGAGCTGCAA
CAGAGCCTCCTGAAACTACAGCAGAGCCTCCTGGAACTTCAGCAGAGCCT
CCTGGAACTACAACAAAGTCTCTTGGAGCTGCAACAGAGAATCCTGGAAC
TACAACAGAATTTCCAAAAACTACAACGGATTCTATTAAAACCACAAAAG
AGCTTCTTGGAACTAAGAAAAATGCTCCTGAAACTAAAACATATAGCCTC
GGAACTACAGCACAATCCGGAAGTAGTGTCAAGACAACAGAGTCTACTGG
AACTAGTGCAATGGAAATTGAAACATCCACTACAACAAACCTTCCCACTA
CATCTTCAGCCTCATCTACAATTGAAATTGATAATACAACAAGACCAAAG
GCAACTGAAAATTCAAAATTCCAATCACATTCATCAACAAAATCTGTAGT
GGTTTCTACCACTAAACAAATAATATCTTATAACAACAGTAATAACCAAA
ACAAAACAGTGACAACAACACCAACAACTAAACTTAATCCCGAACCGGAG
AATAAACTTCCGACCACACCTATGGATGCTTATGATTTTTTTCTTCTTCA
AGTAAAACTTTTCAGAAATGAATCACAGAACTGTACAGTGTTTGTGAGTA
ATTTTACGGGCAATCAAACCTTCTTCAATGCCACGTGGTCAATGTGTTAT
GAACCTCCATCAGGTAAGATTTACGTAAATAGCAACCACCCCTTCTCACA
AACCCGGTGGGATTTTATCCACAGATTTATAAAGCCCGAAGGGCTAGATG
TCGTGCTTTAAGCTGTTCCAAGTAAAAAATAATTGAATATCGCAAAAAAA
AAATTGCTGCTTTTGCTTTCGAAAACCCGTGGAGCTTCTTATGGGTCATC
AAGCGCTGAAGTTCTATTGTAATCTCACGTGACTTAGGTTGAATTTCCTA
CTTAATCTTGGCACACTTTCAAACCAAAGCACGTCATCTAGCGCCTCGGA
CTTTATAAATCTATGGTTTTATCACCCCGCAGTTTGGGTAAAAATAATAA
CGGACAAAAACTTGATGGGAATTGGTATTCCAATGTTTTTTAATGGCTTG
GGATTTGAATTCAATTGTTTTCTAGCCAGAAAATTCAGAATAGCCGAAAA
GAATAGCACAATATTTTGCAGTGAGGATTTGCTTATCTGATTATTTTCAG
CGGGGACTAAAATTGGTGTATAATTTTCCATCGGAGACGATATTTTGGCC
AATTTTTCCAGTAGGAAAAGTTCCCAGGGAGTCCGTGAGAAGGGAGTGTA
TAATAACGACTAAAACTTATGCTGAAGGCAAATGATAAGTAATCAGTGTA
ACCATACCGTGAAAACCACAGGTCGAAATCGTATATCGACGCTGTGCCGA
CCAATTCAGATTCTATTCAGCGCACAATCAACGGAGAGAAAAGTAACCAT
GACGACCATCCAAGATCTTGGATGAAGTTCAAAGTTGATATTCTTATTCC
CGTCGTTGGAAACACAGCTCAAAAATGTCATCGATGCTTTTTAAAAAGAG
TCATTGATAGAGAATCAGGGTAGTGTAACCAGTGATCAGTTGATATAAAG
ATAGACTCCGTGTGGTGTCATCTTCACCCACGATCAGCCATTTTTCTAAG
AAATGGCAGAAAGAATATGTACAGGATGTCTTACTAACACCTTGCTTAGG
TTCCTGTGTTTGACCTGCGCATAGTTTTCTGTTTGTTGTTTTATTTTGTG
GGTGAAAATTAGTGAGTTAGAAACAGGTAGATTGCTTGAGATTTGGTTGA
AGATAGTGCCTAATTCAGCTAAATCAGTCTACTGTTCACTGAGAAAATAC
ACAGCTCTAGTTTTCGGATGATTGCCAGACTGATTGAGTTCATTCTTTCA
ATCCATTCTTGTTGGTCTTACACAATAAACTCAAGGTCTTGAAATATACA
CTACCAAGTATCTAAAGTTGTTTATTTTGATTAATTTTACGACCAATATC
TCTTCATTCTCTGTTGTTTTTTATAGAACCTGAGCCACCGCAATGGTACG
AAGATCCACAGATCTACTATTATGGTGGCGGTGGCATTATCTTCCTTATA
TTTCTCTTCGCTATGAAAAGTCTATGCGCATATTGCAGGTGAGTTTTAAG
CCGTTTTTAATGGTCTTTGCAAACTCGTTCTAGCAATGTGTTTGCTTTGT
TTGACCTCAGGGAGGGATATGTGCTAATCAGTCTCTATTGTACCGACAGG
GACGCAAAAACCATAAAACAGCTTTTGGGTTTGTAGATTCTCGTTATTTT
GGTCAAAGTTCGAAAAACGTTCCTGGAATTTGTGAAGATAGGCTCTCGAA
GAGTCGTAAAAACATTAATTTAGTCTCTGGTCTCAGTTTCTTTAAACTTT
GGCTCGGATATACCGGTCACCTCATTGAAGCAACCTTGATTCCTGAATAT
TGTAAAATTCCATAATGATGATATTCTTATCAAAGTCTTATTTTGTTGGT
CGATTTAATCACAAATGTTTTTTATATTAACAAGATATTTTTATAAAAAG
AAAATAAGTTTCCACATTTGATAGTACGATAGAAACTATTTTACGTACTC
TTTACCGATCAAATTTACTTTTATCTTTCAGTAAGTACAGCAGTGATTAC
TTGTTGCCACGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038683XLOC_038683Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061691-exon-scaffold_36-1575043694:1339810..1341472TCONS_00061691-exon-scaffold_36-1575043694:1339810..1341472Clytia hemisphaericaexon
TCONS_00061691-exon-scaffold_36-1575043694:1338385..1338496TCONS_00061691-exon-scaffold_36-1575043694:1338385..1338496Clytia hemisphaericaexon
TCONS_00061691-exon-scaffold_36-1575043694:1337860..1337891TCONS_00061691-exon-scaffold_36-1575043694:1337860..1337891Clytia hemisphaericaexon
TCONS_00061691-exon-scaffold_36-1510915933:1339810..1341472TCONS_00061691-exon-scaffold_36-1510915933:1339810..1341472Clytia hemisphaericaexon
TCONS_00061691-exon-scaffold_36-1510915933:1338385..1338496TCONS_00061691-exon-scaffold_36-1510915933:1338385..1338496Clytia hemisphaericaexon
TCONS_00061691-exon-scaffold_36-1510915933:1337860..1337891TCONS_00061691-exon-scaffold_36-1510915933:1337860..1337891Clytia hemisphaericaexon
TCONS_00061691-exon-scaffold_36-1491911889:1339810..1341472TCONS_00061691-exon-scaffold_36-1491911889:1339810..1341472Clytia hemisphaericaexon
TCONS_00061691-exon-scaffold_36-1491911889:1338385..1338496TCONS_00061691-exon-scaffold_36-1491911889:1338385..1338496Clytia hemisphaericaexon
TCONS_00061691-exon-scaffold_36-1491911889:1337860..1337891TCONS_00061691-exon-scaffold_36-1491911889:1337860..1337891Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:1337860..1341472 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0432996	0	0.0491862	0	0	0	0	0.0892258	0.0231737	0	0	0	0	0	0	0	0.0946113	0	0	0	0	0	0.300857	0	0	0.0843022	0.129956	0.0492835	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061691 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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