|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061632 ID=TCONS_00061632|Name=TCONS_00061632|organism=Clytia hemisphaerica|type=transcript|length=857bp
ATGAAATCGCGAAAGATCATATACACTGGAACATGTATCTTAACCTTTGT
CATCATGGTCGTTGCAACTATAGGCAATAGTTGGAATACAATGAAACACA
TTGCAACAGTCAACGTGAACGGTCAACAGCGGATCATAAGCATCGATGAA
GGTCTATGGAAAGTTTGTGTTTATTCAGATTACCAAGGAACAGTACGTGG
TTGCACCACTATTGAATCTTCAATCACAGACAAACACATTAATGAGGACC
ATGAGCTGCAACAGTACTGATGCTCATTGGTATTGTGGTTTATACAATTC
ACTTTGAAAGTGCTACGGAGTTCGCCTCCCAAGACGTATTGATACCAAAC
GATACTGATTACGGTTGGGCGTATATATCAGCCTGGATTGGAGTGATTTT
ATCGGGTATACAtgcttttattattttcttcgTGCAAAAGAAAAACGCAT
ACAGATATTGATTGATGTAAGGAagatttttggcaaaatcaaAAGACAGG
AGAGGAGAGGAGAATTGGAAAATATATGCCTGCGCTGAATCTGAATTGAG
GGTTATTGGATTACATCAGAAACTTATCAAAGAATCTTATTGAAGACAAT
CTTTAATTTCAGACTTAGATTTTCAACCCAGACAATTTGAGCGGAATTTT
CCTCGAACAATACGAAGGGAAATCTGTCCAGATTTGTGCGTTTCCCCTGT
TGAATAGAAAATGGAATGAAACAAATgtacgaatcctatgaaataagCTA
ACACCCGTTCTGATTAACACTATTGGATAGATTTCTAAGGCAGACGTTAC
ATTTAAGATTAACGAAGCAGCCGTGATAgagatttttaattatttagttt
tcaaaag Run BLAST on NCBI transcript from alignment at scaffold_36:1345409..1346478+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061632 ID=TCONS_00061632|Name=TCONS_00061632|organism=Clytia hemisphaerica|type=transcript|length=1070bp|location=Sequence derived from alignment at scaffold_36:1345409..1346478+ (Clytia hemisphaerica)
ATGAAATCGCGAAAGATCATATACACTGGAACATGTATCTTAACCTTTGT
CATCATGGTCGTTGCAACTATAGGCAATAGTTGGAATACAATGAAACACA
TTGCAACAGTCAACGTGAACGGTCAACAGCGGATCATAAGCATCGATGAA
GGTCTATGGAAAGTTTGTGTTTATTCAGATTACCAAGGAACAGTACGTGG
TTGCACCACTATTGAATCTTCAATCACAGACAAACACATTAATGAGGACC
ATGAGGTACCAGGATGGTTACAAGCGTGTCGCGCGTTCACGGTGTTATCG
TGTTTAGCTGGTCTCGTTGGTGTGATCATGATTTTAGTAAGTTTTAAACG
TGAGATAGACCAAACACGATTTATTGTATCATTTTCTTTCGTAGCTGCAA
CAGTACTGATGCTCNCTTTAAACGTGAGATAGACCAGACACGATTTATTG
TATCGTTTTCTTTCGTAGCTGCAACAGTACTGATGCTCATTGGTATTGTG
GTTTATACAATTCACTTTGAAAGTGCTACGGAGTTCGCCTCCCAAGACGT
ATTGATACCAAACGATACTGATTACGGTTGGGCGTATATATCAGCCTGGA
TTGGAGTGATTTTATCGGGTATACAtgcttttattattttcttcgTGCAA
AAGAAAAACGCATACAGATATTGATTGATGTAAGGAagatttttggcaaa
atcaaAAGACAGGAGAGGAGAGGAGAATTGGAAAATATATGCCTGCGCTG
AATCTGAATTGAGGGTTATTGGATTACATCAGAAACTTATCAAAGAATCT
TATTGAAGACAATCTTTAATTTCAGACTTAGATTTTCAACCCAGACAATT
TGAGCGGAATTTTCCTCGAACAATACGAAGGGAAATCTGTCCAGATTTGT
GCGTTTCCCCTGTTGAATAGAAAATGGAATGAAACAAATgtacgaatcct
atgaaataagCTAACACCCGTTCTGATTAACACTATTGGATAGATTTCTA
AGGCAGACGTTACATTTAAGATTAACGAAGCAGCCGTGATAgagattttt
aattatttagttttcaaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061632-exon-scaffold_36-1491911889:1345409..1345663 | TCONS_00061632-exon-scaffold_36-1491911889:1345409..1345663 | Clytia hemisphaerica | exon |
| TCONS_00061632-exon-scaffold_36-1510915933:1345409..1345663 | TCONS_00061632-exon-scaffold_36-1510915933:1345409..1345663 | Clytia hemisphaerica | exon |
| TCONS_00061632-exon-scaffold_36-1575043694:1345409..1345663 | TCONS_00061632-exon-scaffold_36-1575043694:1345409..1345663 | Clytia hemisphaerica | exon |
| TCONS_00061632-exon-scaffold_36-1491911889:1345877..1346478 | TCONS_00061632-exon-scaffold_36-1491911889:1345877..1346478 | Clytia hemisphaerica | exon |
| TCONS_00061632-exon-scaffold_36-1510915933:1345877..1346478 | TCONS_00061632-exon-scaffold_36-1510915933:1345877..1346478 | Clytia hemisphaerica | exon |
| TCONS_00061632-exon-scaffold_36-1575043694:1345877..1346478 | TCONS_00061632-exon-scaffold_36-1575043694:1345877..1346478 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:1345409..1346478 + |
Blast
The following BLAST results are available for this feature:
|
