TCONS_00064586 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064586
Unique NameTCONS_00064586
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length923

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064586 ID=TCONS_00064586|Name=TCONS_00064586|organism=Clytia hemisphaerica|type=transcript|length=923bp
GGAAAATGAGTGGGCTTAAAAAAGGTGAAATCTTTATATAAAGAGGAGGT
ATAAGGTTCACTGATACACAAACTGCAGAGGTAAGAAGTCAGCCAAAAAC
ATTAGAGAAACTCAAAGATATCAAACTTGATTATCTGATAACAAATAAGA
TGGTTTGGAAGCTATTGATTACCGTTGCTTTAATTTTTGTGACGTTTTCT
GACGCAAGTTTTGAGATTCATGCATCTCATGGTAACCTTGAAATCAAGAC
GATTGGACAAAACGGTGAAGTCACCCATTATGAGAAAACTCATGATGACA
ACAATGAAAATATCTATGTTCCACAAAAAAGAGCATTACCAGCCCACAAA
TCTTTTCATTATGCTTCAATGGTGGGTATGATGAGAAGATCAAAACGACA
TAATATTGTCGATAGTTGCACTATCTCTACAATCAACCAAGACATTTTCG
TCAACAACTGCAATGCAACGATTTATAACTTGAAGGTTTGCTCTGGCAGT
TGCCCAGCAAATGAAATAGATTACTTTGGATGTCGAATGTCAGACTCACG
AGAGTTAGAGGTCGATCTCCATTGTCCTGATTCAACCACAATCAACCCGA
GTATTATGGTCAAAGATGCTAATCAATGTGAATGCAAGAAATTGCCCAAA
TTCTAAAGTTGTGAGGCACTCTATATTGAAACCTCATTATCATTGTATTG
AAAGATTATTGTAAAATTTAATGTATTTTAACGTTGAAGCTTAACTTTTA
TCATCTGAATTATACTTAGAACTAAAAAGTCATtattgaaaattctgaaa
tccCTTGGTAAAACGTTGTaaaaattaagggctctgaccatagtcggaaa
attgattttagtatctgaacatgaaagttatgttttagattctttaacac
ttttaacaaagaattgcctttat
Run BLAST on NCBI

protein sequence of TCONS_00064586-protein

>TCONS_00064586-protein ID=TCONS_00064586-protein|Name=TCONS_00064586-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MVWKLLITVALIFVTFSDASFEIHASHGNLEIKTIGQNGEVTHYEKTHDD
NNENIYVPQKRALPAHKSFHYASMVGMMRRSKRHNIVDSCTISTINQDIF
VNNCNATIYNLKVCSGSCPANEIDYFGCRMSDSRELEVDLHCPDSTTINP
SIMVKDANQCECKKLPKF
Run BLAST on NCBI

transcript from alignment at scaffold_419:474624..478403-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064586 ID=TCONS_00064586|Name=TCONS_00064586|organism=Clytia hemisphaerica|type=transcript|length=3780bp|location=Sequence derived from alignment at scaffold_419:474624..478403- (Clytia hemisphaerica)
GGAAAATGAGTGGGCTTAAAAAAGGTGAAATCTTTATATAAAGAGGAGGT
ATAAGGTTCACTGATACACAAACTGCAGAGGTAAGAAGTCAGCCAAAAAC
ATTAGAGAAACTCAAAGATATCAAACTTGATTATCTGATAACAAATAAGA
TGGTTTGGAAGCTATTGGTAAGTATCAACTCTGCGTCAACATTTACATTT
TAGGATCTACACGTTTTTTTTCATAAGAACATTCAAAATTTTTTAAGCCT
TTGAATGTTCTTTACTTTTTGAGTTTTAAGCCTTAAAATGTTCTTAACAT
GTTCTTATTTTCACAATTTTGTGGGCATTTTTATCCCATTTCCTAAAAAC
CGGTTGTTTTCGAGTCCGCAAAGCCTTAAAATGATCTTAACTTATTCTTA
GTATTTTGGCTGTCGAAGCCTCATGTTCTTATATAGCTTGTTCTTATAAA
AAACGTGTACGTTGAATTTCAAAGTTTGTGTCTATGACCATACACTTCTT
TTCAAGTGGCCCGATGAAATCTTTTTTTACGTAACTTTCAGCGTTCTTTT
CAATGTAAATGACGAGAATCAGTTTCACTTTGAAGATGGACATGAAATTT
CATAATCTTTCACAGGAGAAAAGGAGACAATTTTTGCCTGATTTTTGATT
AATTGATCTATGATTTAAAATTACTCAAGAATATTTTAAGGCTCAAAATA
CACACTTCTCGAGGTAAATCAACAGTATTGCGGGACTCGTTTTCAAATGA
AATAATTACTTCAACCAACATTTACATATGTAATATGTTTCCCAAAAAAA
CCTTTTTTGATTTTGATACAAACCCGTAGACACATTAATCTCATATCTGA
CGATGTTGAAGTATCGTAGAAGAAAGTCTTTGAGAACGTGGCTCGCAATT
ATTTCATACATTTCGAGAAGAGTGTATTATTGCTAAATTTTAACAATCAC
GAGACTCAATCCTATCTCTGTAACCTGATAACAGCTGGTAATAATTTTCT
TACGGAGCTTTAGCGTGGTGGGCAGATAAAACAATCACAATCTGATCTCA
GGTTAAATTTATGTACTTCTTAGTTACTTAAACAAAAACTGTCTGTTTAA
ATCTTGTTTAGATTACCGTTGCTTTAATTTTTGTGACGTTTTCTGACGCA
AGTTTTGAGATTCATGCATCTCATGGTAACCTTGAAATCAAGACGATTGG
ACAAAACGGTGAAGTCACCCATTATGAGAAAACTCATGATGACAACAATG
AAAATGTACGTACACAAACCTAGCCCGGGGGCAGTGGGGTTTACCAACTA
GCAGTGTGTGGGGCGGTATTAGCTTTAAGAATCGCCAATCATACTAAAAG
TGTATTTTACTCAAACTTTCGGCAAAGATTTGCTGAAAATTCCACCCTTA
CATTGTATTTATCAGAAAGTCAATGCTTACAGTGCATTTCTGCTATCTCT
TGAAAACATACCCTTAACTGCCGATGTACCCGGTCAATTTGCCTGACCTC
CTTGAGTATCGTTGCTGGTACAAAACTTTAATAATATGTCCATTAAACTT
CCAATCTACGTTATGCTCTAGTTGGAGTTCTTTCTATTCTAGAATTCATC
ATCACTTCTGAAATGAGTCAACCTGGAATTAAATGAAGTTAAATATCTCG
AATACTCTATAAAGATTAGAAATACAATATCAATAAACTTTGCAAGTTGT
CACTCTCTTTAATTTTACAAAGCTCCCTTCTCGATGGAAGGAATTGAAAA
TTTCCTAAAAACATATCAAACAACTCACTATAATCCGACATTCCATAATT
TAAAAGCCCTTGTCAAGTTCCTTGAAATTTCTTTGCTATCTACAATCCCG
GTCATAATATTTGAGAAAAAAAGGAAAGGAATATAGCCAGGAAGGGTAGA
GTAGAGTTTTAACTCTGAGTTTTAACATGAGACTTGAGACTTAGGATCTG
AGGAGCCAAAAGTTCAAGAATGGTCCAATAGGGCTCAGAATATAGCCTAG
AAGTCTATAAGCCCCACTCAAATTGAAATATTCGAATAAATTTATCAATT
TAGCCCAAAAGCAACTTTCTCACCCGCACTTTAAAATGCTAAAAACGAGG
AATTAACCAAAATTCTCAATATATATTTTGACCGATATTGTACTACAGAA
GCTTTCGAATTAAATTTATACTTTTTCGGAGAGCAACTTTTCCGCAAATA
GTTTATACAATTTCAATTAACTAATTCCACCATAATTTGTTTTCTTACAT
AGATCTATGTTCCACAAAAAAGAGCATTACCAGCCCACAAATCTTTTCAT
TATGCTTCAATGGTGGGTATGATGAGAAGATCAAAACGACATAATATTGT
CGATAGTTGCACTATCTCTACAATCAACCAAGACATTTTCGTCAACAACT
GCAATGCAACGATTTATAACTTGAAGGTAAGTTATTTACACCTATATTTT
ACTTCCTTGTGAATCCTATGCTCCCAGCTGGCTGGCACACAACGTTTTTT
CAACGTTTATCTAACGTTATATGGATGTTGTGAACGTTAAATAAACGTTG
AAACAACGTTGTGTGCCAGCTGGGCTGCAATTCTCCAATGTGATGGATTT
CAGAGGGTATAGTAGAGTCTCTTTAACTCGAACCTCTATAAATCGAATAT
CGCCTTAACTGAAACAAATTCTCTTGTCCCTTCAGTTGCCTTATTGCCTT
ATAAACATTACTCCATAACTCGAAATTTCTCCATAACTCAAACAAATTTG
TGTTGTGTGAAACAGGGTTGTGTATTACAAAACAACACGTTCAGCTTGGA
TTCTTTAGCTTTCCTACCATAAATTATAAATTTTTGAAACACCCCCTTCT
CGCAGACCCGGTAGGATTCTTTTAGGCAGTGGGGATGAAAATGACGGACT
TTGGAATTGATATTCCCATATTTTTTATGGTAGATGATTTCAATTTTTTT
GTCTTCAACTCAGAAAATTCAGTGGGATAGGTAAAAAAATAAAAGATTTG
CAGTGAGCATTGGTTAATTTGATTATTTTCAGTGAGGAGAAAAATTGGAG
GATAACCTTTCACCAGGGGCGATATTTTGGCCAATTTTTTCAGTGGAAAG
GGATCCCAGTGGGTCTGTGAGAAGGGGGTGTTTTAAATATAGCAGTTGCA
AAGACGTAGAGGAGGGCACCACTCCTTTCCCTGGATTTTTCAACTTATCT
TGACACTTTTCTTAGTTACTGGCCAGCTTGCACACAACGTTGTTTCGACG
TCCACCTAATGTTCACAACGTCCATATAACGTTAGATGAACGTTGAAACA
ATGTTGTGTGTTAGCTGGGTGAACATAATTTCTCATCACTAGGTTTGCTC
TGGCAGTTGCCCAGCAAATGAAATAGATTACTTTGGATGTCGAATGTCAG
ACTCACGAGAGTTAGAGGTCGATCTCCATTGTCCTGATTCAACCACAATC
AACCCGAGTATTATGGTCAAAGATGCTAATCAATGTGAATGCAAGAAATT
GCCCAAATTCTAAAGTTGTGAGGCACTCTATATTGAAACCTCATTATCAT
TGTATTGAAAGATTATTGTAAAATTTAATGTATTTTAACGTTGAAGCTTA
ACTTTTATCATCTGAATTATACTTAGAACTAAAAAGTCATTATTGAAAAT
TCTGAAATCCCTTGGTAAAACGTTGTAAAAATTAAGGGCTCTGACCATAG
TCGGAAAATTGATTTTAGTATCTGAACATGAAAGTTATGTTTTAGATTCT
TTAACACTTTTAACAAAGAATTGCCTTTAT

Coding sequence (CDS) from alignment at scaffold_419:474624..478403-

>TCONS_00064586 ID=TCONS_00064586|Name=TCONS_00064586|organism=Clytia hemisphaerica|type=CDS|length=2028bp|location=Sequence derived from alignment at scaffold_419:474624..478403- (Clytia hemisphaerica)
GTTTGCTCTGGCAGTTGCCCAGCAAATGAAATAGATTACTTTGGATGTCG
AATGTCAGACTCACGAGAGTTAGAGGTCGATCTCCATTGTCCTGATTCAA
CCACAATCAACCCGAGTATTATGGTCAAAGATGCTAATCAATGTGAATGC
AAGAAATTGCCCAAATTCTAAATCTATGTTCCACAAAAAAGAGCATTACC
AGCCCACAAATCTTTTCATTATGCTTCAATGGTGGGTATGATGAGAAGAT
CAAAACGACATAATATTGTCGATAGTTGCACTATCTCTACAATCAACCAA
GACATTTTCGTCAACAACTGCAATGCAACGATTTATAACTTGAAGATTAC
CGTTGCTTTAATTTTTGTGACGTTTTCTGACGCAAGTTTTGAGATTCATG
CATCTCATGGTAACCTTGAAATCAAGACGATTGGACAAAACGGTGAAGTC
ACCCATTATGAGAAAACTCATGATGACAACAATGAAAATATGGTTTGGAA
GCTATTGGTTTGCTCTGGCAGTTGCCCAGCAAATGAAATAGATTACTTTG
GATGTCGAATGTCAGACTCACGAGAGTTAGAGGTCGATCTCCATTGTCCT
GATTCAACCACAATCAACCCGAGTATTATGGTCAAAGATGCTAATCAATG
TGAATGCAAGAAATTGCCCAAATTCTAAATCTATGTTCCACAAAAAAGAG
CATTACCAGCCCACAAATCTTTTCATTATGCTTCAATGGTGGGTATGATG
AGAAGATCAAAACGACATAATATTGTCGATAGTTGCACTATCTCTACAAT
CAACCAAGACATTTTCGTCAACAACTGCAATGCAACGATTTATAACTTGA
AGATTACCGTTGCTTTAATTTTTGTGACGTTTTCTGACGCAAGTTTTGAG
ATTCATGCATCTCATGGTAACCTTGAAATCAAGACGATTGGACAAAACGG
TGAAGTCACCCATTATGAGAAAACTCATGATGACAACAATGAAAATATGG
TTTGGAAGCTATTGGTTTGCTCTGGCAGTTGCCCAGCAAATGAAATAGAT
TACTTTGGATGTCGAATGTCAGACTCACGAGAGTTAGAGGTCGATCTCCA
TTGTCCTGATTCAACCACAATCAACCCGAGTATTATGGTCAAAGATGCTA
ATCAATGTGAATGCAAGAAATTGCCCAAATTCTAAATCTATGTTCCACAA
AAAAGAGCATTACCAGCCCACAAATCTTTTCATTATGCTTCAATGGTGGG
TATGATGAGAAGATCAAAACGACATAATATTGTCGATAGTTGCACTATCT
CTACAATCAACCAAGACATTTTCGTCAACAACTGCAATGCAACGATTTAT
AACTTGAAGATTACCGTTGCTTTAATTTTTGTGACGTTTTCTGACGCAAG
TTTTGAGATTCATGCATCTCATGGTAACCTTGAAATCAAGACGATTGGAC
AAAACGGTGAAGTCACCCATTATGAGAAAACTCATGATGACAACAATGAA
AATATGGTTTGGAAGCTATTGGTTTGCTCTGGCAGTTGCCCAGCAAATGA
AATAGATTACTTTGGATGTCGAATGTCAGACTCACGAGAGTTAGAGGTCG
ATCTCCATTGTCCTGATTCAACCACAATCAACCCGAGTATTATGGTCAAA
GATGCTAATCAATGTGAATGCAAGAAATTGCCCAAATTCTAAATCTATGT
TCCACAAAAAAGAGCATTACCAGCCCACAAATCTTTTCATTATGCTTCAA
TGGTGGGTATGATGAGAAGATCAAAACGACATAATATTGTCGATAGTTGC
ACTATCTCTACAATCAACCAAGACATTTTCGTCAACAACTGCAATGCAAC
GATTTATAACTTGAAGATTACCGTTGCTTTAATTTTTGTGACGTTTTCTG
ACGCAAGTTTTGAGATTCATGCATCTCATGGTAACCTTGAAATCAAGACG
ATTGGACAAAACGGTGAAGTCACCCATTATGAGAAAACTCATGATGACAA
CAATGAAAATATGGTTTGGAAGCTATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040502XLOC_040502Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064586-exon-scaffold_419-1575043694:478237..478403TCONS_00064586-exon-scaffold_419-1575043694:478237..478403Clytia hemisphaericaexon
TCONS_00064586-exon-scaffold_419-1575043694:477149..477292TCONS_00064586-exon-scaffold_419-1575043694:477149..477292Clytia hemisphaericaexon
TCONS_00064586-exon-scaffold_419-1575043694:475978..476151TCONS_00064586-exon-scaffold_419-1575043694:475978..476151Clytia hemisphaericaexon
TCONS_00064586-exon-scaffold_419-1575043694:474624..475061TCONS_00064586-exon-scaffold_419-1575043694:474624..475061Clytia hemisphaericaexon
TCONS_00064586-exon-scaffold_419-1510915933:478237..478403TCONS_00064586-exon-scaffold_419-1510915933:478237..478403Clytia hemisphaericaexon
TCONS_00064586-exon-scaffold_419-1510915933:477149..477292TCONS_00064586-exon-scaffold_419-1510915933:477149..477292Clytia hemisphaericaexon
TCONS_00064586-exon-scaffold_419-1510915933:475978..476151TCONS_00064586-exon-scaffold_419-1510915933:475978..476151Clytia hemisphaericaexon
TCONS_00064586-exon-scaffold_419-1510915933:474624..475061TCONS_00064586-exon-scaffold_419-1510915933:474624..475061Clytia hemisphaericaexon
TCONS_00064586-exon-scaffold_419-1491911889:478237..478403TCONS_00064586-exon-scaffold_419-1491911889:478237..478403Clytia hemisphaericaexon
TCONS_00064586-exon-scaffold_419-1491911889:477149..477292TCONS_00064586-exon-scaffold_419-1491911889:477149..477292Clytia hemisphaericaexon
TCONS_00064586-exon-scaffold_419-1491911889:475978..476151TCONS_00064586-exon-scaffold_419-1491911889:475978..476151Clytia hemisphaericaexon
TCONS_00064586-exon-scaffold_419-1491911889:474624..475061TCONS_00064586-exon-scaffold_419-1491911889:474624..475061Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064586-proteinTCONS_00064586-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_419supercontigscaffold_419:474624..478403 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.542606	0.543051	0.666421	0.539241	0.0670955	0.0530184	0.0638835	0.240294	0.932349	0.621612	1.56177	0.879342	4.1584	2.42581	0.835761	0.968913	1.83304	2.23144	28.6377	48.1577	1.12207	2.57242	1.55737	1.60864	0.213394	0.143276	8.6006	6.60204	3.51463	2.52868
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006207Cys_knot_C
IPR029034Cystine-knot_cytokine
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064586 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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