|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061945 ID=TCONS_00061945|Name=TCONS_00061945|organism=Clytia hemisphaerica|type=transcript|length=3312bp
aATTTAGAACCCCACTGCTGAGGACTTGAGGTCTTAGAAATCGAATAGAT
AATGCATCAAAGGACTTCGAAAACGGAAAGCTTCTCGAAAAGGTTCGAAG
AATGTCATTTTACAGTTTTGACGATTCCTATTCGTCAGCGTACGAAAACA
GTGAAGCGATCGACAGTGCTCGTTCCAATTACACCACTATTGGGGAAAGT
GAAGAGTCGTATACCAAAGTCAAAGTACTGGGTCGTGGTGCATTCGGTGA
AGCAGTGTTGTATCGGAAAACAGCAACCAATGATTTGGTGGTGTGGAAAG
AGATCAATTTACAGCGCGCGTCCGATAAAGAGCGCACGGGTGCACTGAAT
GAAGTAGAGATTCTATCATTGTTAGATCACATTAATGTGGTTGCATATTA
TAACCATTTTTTCGATGGTGCTTCACTGTTCATCGAGATGGAATACGCAA
ATGATGGCTCACTACACCACAAAATTATTTCACGAGACGGAAAGCTTTTC
CCGGAAAACGAGGCTCTGCTTTATTTCTACCAATTAGTATCAGCTGTCAG
TTATATCCACAATTTTGGTATTCTACATCGAGATATTAAAACgttaaata
tttttatgacCAAATCTAAACTGATAAAACTTGGTGATTTTGGAATCTCA
AAAGTTCTTGAAGAGACCTATGGACAAGCAGAGACTTGTGTTGGGACACC
ATATTACATGAGCCCTGAGCTGGTCAAAGGTGATCCGTATAACCAAAAGT
CTGACGTATGGGCTTGTGGTTgtgttttgtttgaaattttcgcTCTCAAG
AAAGTTTTTGAGGCGAGTAACCAATTGAAATTGATCACTTCGATTCTTGA
GAAAGATGTTGGTGAGATTAGTGATGTTTACAGCGAGGAAGCACAACGTA
TTGTTCGCTCAACTCTCGAGAAAGATCCTGAAAAACGACCCACTACTGAG
GAATTAAGCCAACTACCCATTTTTGATAAATCGAAACTGACATTAGTAAA
TACACCTCGAGTACCACCCTTGTTGAGACGTATTTCATCACAAAGGTCGG
TCGTTTCCACCCCTCTAACGCCCACCGCCCCTGTATCAGTGTCTACCCTC
GCAAGTAGTGTTTTCACGTGGGGCGGCGGAAAAGTGGTGCCACAAAAACT
TGAGACGTTTGCTGAGGGTCAGAGCGGGATTCAAGTTTCGGCTGGATTCT
CGCACTTTGCTGTTATCACCATTGAAAAGGAAGTCTACACGTGGGCCAAC
ATTCAAGGAGGTACTGAGATCGTCGGCCAATTGGGACACGGAAATACCGC
CATGTATCGCTCACCGAAGAAAGTGGAATTTTTCAACGGGATACCCATTA
AACAGGTGGCTTGTGGCGAAGATTTCACCGTATTCTTAAGTGATAGTGGA
AACGTATACGCGTGTGGATCTGATTATTCTGGTTGTATCGGCTGTGATGA
GTCGCTTGGTGATAAAGTGTTAACTCCTCATCAAATAGAGACGTTCGATG
GTAAATTCGTGAAACGAATAGCTTGTGGTGATTCTCACGTTGTTGCAATG
ACCGACCAAGGAGAAGTGTACGCGTGGGGTTGTGGAGAGTATGGAAGATT
AGGTCTTGGCCATGAGGACGACTGCAGTACGCCACAGTTGGTGCCGCTAC
CCAAAAACTATTCCTCGTGTATCATTGATGTAGCATGTGGGCGTGATAAC
ACTTTCTTATTGACAACACAAGGACATTTATTGGCTTTTGGAAGTAACGA
AGATAATAAGATGGCCTTGAACCAAACAGTGCATTTGAAAGGCGGTGGCA
AAAATAGAGAAATTGATTTCGTATATTATGTCAGTAAGCCAACCCCTGTG
AGAGCACTGAACAGTTATCGGTTAGTAGCGGTGGCATCTGGCAAATCTCA
CTCTGCAGCTTTAGATGAGTATGGCAGACTGCTGACTTTTGGTGCAAATA
AATATGGTCAGTTAGGAGTCGGTGATTACAAGCCGAGAATCTCGCCCTCT
TTAGTTAGAGGTAGTTTGACCGGAAAGGAAGTCATTTTGTGCGCATGTGG
AGATGGCTTTACTGTCGTTGCAACGAAAGATAGTCAGATCTTCTCTTGGG
GGTCAGCTAAAAACGGTCGCCTCGGAATACAACTTGCTGCTGGAAAATCT
CTCTGCTCAACACCGAAACCTATTTTTGGTTCACTTCACAAAGTTGCTAG
TCTATCGTGTAGGCATTGGAATACTATCATTCTAGCTGAGAAGCTGATCG
ACTCCAAGCTAATTCATACGAAGGAATTGAGTATGACAGAGGAAGGTTTT
GGCGGACAAGGTCGGAATTATAAAGCAGTTATTGGTGAAGAGCAAACATC
GGCCAGTTTTCAATTCGATGATATTCCTTTTGATAATGAGAGTGACGCCA
AACCTAAACGCAAACTTGAGCGACAGGAATCAACGCGAGAGGATAAATTG
AGCGACGAAGATGATTCGATGCCACCGTGGCTCGTGGATGAGTTACAAAA
TGCTGAAGTTATTCCTATGAAGGGAGGCGAGAACGAAGACCGACCGGCGA
CGAAAAACGACGATGATAGCGATAATGAAGACTCGGTACCGGCTTGGTTA
GCCGATGAAATGGAAAACGCCGAGTTTATCCCGATGGATAACGAGAATGT
GTTTGAACAACCGACTAAAGGGAGAAGTGTTTCTGTTAGAGAAACTTTCC
AATCTGTCAGAGCGTCTTCTATAGAGAAATGTTCACAATGTTTGAACCGA
AAACCAGACGTTTTAGAGATGCGAATTAAGGAATTGGAATTTGAAAAAGC
GCAACTGACGAAACGTGTCTCGGAGCAAGAGGTTTTGATTAAGAAATTAG
AATCAGAAAAAGAGTGCTATCAAAAGTTTACTTTTCAATTGAAAGAAGTT
ACTCAACAGTTGCCTGATGAAGANTGATTAAGAAATTGGAAGCAGAGAAA
GAGTGCTATCAGAAGTTTACTTTTCAATTGAAAGAAGTTACCCAACAATT
GCCTGATGAAGAGATTGGTGAGATTTGAGCGTTGATGTCAATTTGTGGAC
AACTGTATTTTGGAATTTGAGTTTGTGAGTACCTCACCagaaactcactt
ttttatcgCTTTTTTTATCGCTCTTCTTGGTGATTTACACTTGGATGATT
TTTCGGAATATAACTGTTTTGACGCaagtatgatttttttctactggAAG
TGCTTCGAACGTTTTATTATGTGAcgtaaaaaatcgaatgtttggagctc
GAAACCTGGactcaagaaattcaaaaaagtcgcaaagtggattAAAAGTT
GCTGGGTGAAAA Run BLAST on NCBI transcript from alignment at scaffold_361:1598338..1602575+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061945 ID=TCONS_00061945|Name=TCONS_00061945|organism=Clytia hemisphaerica|type=transcript|length=4238bp|location=Sequence derived from alignment at scaffold_361:1598338..1602575+ (Clytia hemisphaerica)
aATTTAGAACCCCACTGCTGAGGACTTGAGGTCTTAGAAATCGAATAGAT
AATGCATCAAAGGACTTCGAAAACGGAAAGCTTCTCGAAAAGGTGAATAG
AGAGAGGGAGTGTCTTAATGAGATGGATTTTAGTTCTGTCTTTGAATACT
TTTATACCACATAGTATTGGGTCAATCAAAGTTATAGCGGTAAAGAGCTG
CGCAATTTTTGGTAAGGGTGGTTTACATATAACTATTAATACCCAGGTCC
GTAACAACCGGGGGGTTCACAGGGGcatttgccccccccccaaaaaaaaa
taaaataaaaaaacctttccaaaatttggtagctttgaaaaatcttgtac
TACTGGCTTCATTTTGAACATAATCCTTTAATTAGATGCGTTTTCcagca
atctagacaccttaaacTGCGAAATTTTgtccctcgggccaaaccatggc
tGTTTATATTTCTCACTTGTCCCCCTCAAAATGAGAATGCTTCCTACGGG
CCTGATACCAAGGTTatcatcgttaaagttttcttggaACTTTTAGAATA
TGAACAATGCTAATATAAATTAAACATATTTCCTTCTTTTTCGGTTTTTC
AGGTTCGAAGAATGTCATTTTACAGTTTTGACGATTCCTATTCGTCAGCG
TACGAAAACAGTGAAGCGATCGACAGTGCTCGTTCCAATTACACCACTAT
TGGGGAAAGTGAAGAGTCGTATACCAAAGTCAAAGTACTGGGTCGTGGTG
CATTCGGTGAAGCAGTGTTGTATCGGAAAACAGCAACCAATGATTTGGTG
GTGTGGAAAGAGATCAATTTACAGCGCGCGTCCGATAAAGAGCGCACGGG
TGCACTGAATGAAGTAGAGATTCTATCATTGTTAGATCACATTAATGTGG
TTGCATATTATAACCATTTTTTCGATGGTGCTTCACTGTTCATCGAGATG
GAATACGCAAATGATGGCTCACTACACCACAAAATTATTTCACGAGACGG
AAAGCTTTTCCCGGAAAACGAGGCTCTGCTTTATTTCTACCAATTAGTAT
CAGCTGTCAGTTATATCCACAATTTTGGTATTCTACATCGAGATATTAAA
ACgttaaatatttttatgacCAAATCTAAACTGATAAAACTTGGTGATTT
TGGAATCTCAAAAGTTCTTGAAGAGACCTATGGACAAGCAGAGACTTGTG
TTGGGACACCATATTACATGAGCCCTGAGCTGGTCAAAGGTGATCCGTAT
AACCAAAAGTCTGACGTATGGGCTTGTGGTTgtgttttgtttgaaatttt
cgcTCTCAAGAAAGTTTTTGAGGCGAGTAACCAATTGAAATTGATCACTT
CGATTCTTGAGAAAGATGTTGGTGAGATTAGTGATGTTTACAGCGAGGAA
GCACAACGTATTGTTCGCTCAACTCTCGAGAAAGATCCTGAAAAACGACC
CACTACTGAGGAATTAAGCCAACTACCCATTTTTGATAAATCGAAACTGA
CATTAGTAAATACACCTCGAGTACCACCCTTGTTGAGACGTATTTCATCA
CAAAGGTCGGTCGTTTCCACCCCTCTAACGCCCACCGCCCCTGTATCAGT
GTCTACCCTCGCAAGTAGTGTTTTCACGTGGGGCGGCGGAAAAGTGGTGC
CACAAAAACTTGAGACGTTTGCTGAGGGTCAGAGCGGGATTCAAGTTTCG
GCTGGATTCTCGCACTTTGCTGTTATCACCATTGAAAAGGAAGTCTACAC
GTGGGCCAACATTCAAGGAGGTATTCCTTTTTATCTTCATCATTTCTAGA
TCTCATTTTGAATCGAGATAAAGTAAGAATATATCCAAACAGttagtttt
ttgtttcattgttAAACTCCTTTTGATATTAAAGTATGAGCCCTTGAAAA
TCCTCTGTAAGTTTTCTTGTGAAGGTCACGCTTGCAATCTTCAGTTCTCG
TTAAAATACTACATATTTCCCTTGCATTGTCAACTCTTGCTCTCTCGATG
GTTagaccttaagggaacttattttggcgggaactaattttgacgagcgg
caaaaatcctgaaaatttttaatttttgcgggaacaaattttgacgaatt
ttgtctaaattcaccgaaatcgccaaaattagttctcgccaaaattaagt
TCACTTAAGTTaataattatttcattttatcaTCAGGTACTGAGATCGTC
GGCCAATTGGGACACGGAAATACCGCCATGTATCGCTCACCGAAGAAAGT
GGAATTTTTCAACGGGATACCCATTAAACAGGTGGCTTGTGGCGAAGATT
TCACCGTATTCTTAAGTGATAGTGGAAACGTATACGCGTGTGGATCTGAT
TATTCTGGTTGTATCGGCTGTGATGAGTCGCTTGGTGATAAAGTGTTAAC
TCCTCATCAAATAGAGACGTTCGATGGTAAATTCGTGAAACGAATAGCTT
GTGGTGATTCTCACGTTGTTGCAATGACCGACCAAGGAGAAGTGTACGCG
TGGGGTTGTGGAGAGTATGGAAGATTAGGTCTTGGCCATGAGGACGACTG
CAGTACGCCACAGTTGGTGCCGCTACCCAAAAACTATTCCTCGTGTATCA
TTGATGTAGCATGTGGGCGTGATAACACTTTCTTATTGACAACACAAGGA
CATTTATTGGCTTTTGGAAGTAACGAAGATAATAAGATGGCCTTGAACCA
AACAGTGCATTTGAAAGGCGGTGGCAAAAATAGAGAAATTGATTTCGTAT
ATTATGTCAGTAAGCCAACCCCTGTGAGAGCACTGAACAGTTATCGGTTA
GTAGCGGTGGCATCTGGCAAATCTCACTCTGCAGCTTTAGATGAGTATGG
CAGACTGCTGACTTTTGGTGCAAATAAATATGGTCAGTTAGGAGTCGGTG
ATTACAAGCCGAGAATCTCGCCCTCTTTAGTTAGAGGTAGTTTGACCGGA
AAGGAAGTCATTTTGTGCGCATGTGGAGATGGCTTTACTGTCGTTGCAAC
GAAAGATAGTCAGATCTTCTCTTGGGGGTCAGCTAAAAACGGTCGCCTCG
GAATACAACTTGCTGCTGGAAAATCTCTCTGCTCAACACCGAAACCTATT
TTTGGTTCACTTCACAAAGTTGCTAGTCTATCGTGTAGGCATTGGAATAC
TATCATTCTAGCTGAGAAGCTGATCGACTCCAAGCTAATTCATACGAAGG
AATTGAGTATGACAGAGGAAGGTTTTGGCGGACAAGGTCGGAATTATAAA
GCAGTTATTGGTGAAGAGCAAACATCGGCCAGTTTTCAATTCGATGATAT
TCCTTTTGATAATGAGAGTGACGCCAAACCTAAACGCAAACTTGAGCGAC
AGGAATCAACGCGAGAGGATAAATTGAGCGACGAAGATGATTCGATGCCA
CCGTGGCTCGTGGATGAGTTACAAAATGCTGAAGTTATTCCTATGAAGGG
AGGCGAGAACGAAGACCGACCGGCGACGAAAAACGACGATGATAGCGATA
ATGAAGACTCGGTACCGGCTTGGTTAGCCGATGAAATGGAAAACGCCGAG
TTTATCCCGATGGATAACGAGAATGTGTTTGAACAACCGACTAAAGGGAG
AAGTGTTTCTGTTAGAGAAACTTTCCAATCTGTCAGAGCGTCTTCTATAG
AGAAATGTTCACAATGTTTGAACCGAAAACCAGACGTTTTAGAGATGCGA
ATTAAGGAATTGGAATTTGAAAAAGCGCAACTGACGAAACGTGTCTCGGA
GCAAGAGGTTTTGATTAAGAAATTAGAATCAGAAAAAGAGTGCTATCAAA
AGTTTACTTTTCAATTGAAAGAAGTTACTCAACAGTTGCCTGATGAAGAN
TGATTAAGAAATTGGAAGCAGAGAAAGAGTGCTATCAGAAGTTTACTTTT
CAATTGAAAGAAGTTACCCAACAATTGCCTGATGAAGAGATTGGTGAGAT
TTGAGCGTTGATGTCAATTTGTGGACAACTGTATTTTGGAATTTGAGTTT
GTGAGTACCTCACCagaaactcacttttttatcgCTTTTTTTATCGCTCT
TCTTGGTGATTTACACTTGGATGATTTTTCGGAATATAACTGTTTTGACG
CaagtatgatttttttctactggAAGTGCTTCGAACGTTTTATTATGTGA
cgtaaaaaatcgaatgtttggagctcGAAACCTGGactcaagaaattcaa
aaaagtcgcaaagtggattAAAAGTTGCTGGGTGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061945-exon-scaffold_361-1491911889:1598338..1598429 | TCONS_00061945-exon-scaffold_361-1491911889:1598338..1598429 | Clytia hemisphaerica | exon |
| TCONS_00061945-exon-scaffold_361-1510915933:1598338..1598429 | TCONS_00061945-exon-scaffold_361-1510915933:1598338..1598429 | Clytia hemisphaerica | exon |
| TCONS_00061945-exon-scaffold_361-1575043694:1598338..1598429 | TCONS_00061945-exon-scaffold_361-1575043694:1598338..1598429 | Clytia hemisphaerica | exon |
| TCONS_00061945-exon-scaffold_361-1491911889:1598940..1600107 | TCONS_00061945-exon-scaffold_361-1491911889:1598940..1600107 | Clytia hemisphaerica | exon |
| TCONS_00061945-exon-scaffold_361-1510915933:1598940..1600107 | TCONS_00061945-exon-scaffold_361-1510915933:1598940..1600107 | Clytia hemisphaerica | exon |
| TCONS_00061945-exon-scaffold_361-1575043694:1598940..1600107 | TCONS_00061945-exon-scaffold_361-1575043694:1598940..1600107 | Clytia hemisphaerica | exon |
| TCONS_00061945-exon-scaffold_361-1491911889:1600524..1602575 | TCONS_00061945-exon-scaffold_361-1491911889:1600524..1602575 | Clytia hemisphaerica | exon |
| TCONS_00061945-exon-scaffold_361-1510915933:1600524..1602575 | TCONS_00061945-exon-scaffold_361-1510915933:1600524..1602575 | Clytia hemisphaerica | exon |
| TCONS_00061945-exon-scaffold_361-1575043694:1600524..1602575 | TCONS_00061945-exon-scaffold_361-1575043694:1600524..1602575 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:1598338..1602575 + |
Blast
BLAST of TCONS_00061945 vs. Swiss-Prot (Human)
Match: NEK9 (Serine/threonine-protein kinase Nek9 OS=Homo sapiens GN=NEK9 PE=1 SV=2) HSP 1 Score: 710.294 bits (1832), Expect = 0.000e+0 Identity = 393/843 (46.62%), Postives = 529/843 (62.75%), Query Frame = 3
Query: 195 ESEESYTKVKVLGRGAFGEAVLYRKTATNDLVVWKEINLQRASDKERTGALNEVEILSLLDHINVVAYYNHFFDGASLFIEMEYANDGSLHHKIISRDGKLFPENEALLYFYQLVSAVSYIHNFGILHRDIKTLNIFMTKSKLIKLGDFGISKVLEETYGQAETCVGTPYYMSPELVKGDPYNQKSDVWACGCVLFEIFALKKVFEASNQLKLITSILE--KDVGEISDVYSEEAQRIVRSTLEKDPEKRPTTEELSQLPIFDK------SKLTLVNTPRVPPLLRRISSQRSVVSTPLTPTAPVSVSTLASS-VFTWGGGKVVPQKLETFAEGQSGIQVSAGFSHFAVITIEKEVYTWANIQGGTEIVGQLGHGNTAMYRSPKKVEFFNGIPIKQVACGEDFTVFLSDSGNVYACGSDYSGCIGCDESLGDKVLTPHQIETFDGKFVKRIACGDSHVVAMTDQGEVYAWGCGEYGRLGLGHEDDCSTPQLVPLPKNYSSCIIDVACGRDNTFLLTTQGHLLAFGSNEDNKMALNQTVHLKGGGKNREIDFVYYVSKPTPVRALNSYRLVAVASGKSHSAALDEYGRLLTFGANKYGQLGVGDYKPRISPSLVRGSLTGKEVILCACGDGFTVVATKDSQIFSWGSAKNGRLGI---QLAAGKSLCST-PKPIFGSLHKVASLSCRHWNTIILAEKLIDSKLIHTKELSMT-EEGFGGQGRNYKAVIGEEQTSASFQFDDIP-----FDNESDAKPKRKLERQESTRE--DKLSDEDDSMPPWLVDELQNAEVIPMKGGENEDRPATKNDDDSDNE-DSVPAWLADEMENAEFIPMDNENVFE 2657
+ E Y ++VLGRGAFGEA LYR+T + LVVWKE++L R S+KER ALNE+ IL+LL H N++AYYNHF D +L IE+EY N G+L+ KI+ + KLF E + Y +Q+VSAVS IH GILHRDIKTLNIF+TK+ LIKLGD+G++K L Y AET VGTPYYMSPEL +G YN KSD+WA GCV+FE+ LK+ F+A+N L L I++ + + S YS E ++V S L++DPE+RPT +EL P+ K K+TL+N P P RS T AP++V T +S V+ WGGGK PQKL+ G S QV AG +HFAV+T+EKE+YTW N+QGGT++ GQLGHG+ A YR PK VE G I+QV+CG+DFTV ++D G +YA GSDY GC+G D+ G +VL P Q+ F V++++CGD+HVV +T EVY+WGCGEYGRLGL E+D TPQ V +PK + I+ V CG D TFLLT G +LA G NE NK+ LNQ + G + V Y + T + L+ Y++ +A GK+H+AA+DE GRLLTFG NK GQLGVG+YK R+ +L+ G L GK+VI +CGD FT+ AT D+ IF+WG+ NGRL + + G +C++ P+PIFGSLH V LSCR W+TI++ EK+++SK I + ++ F G + S Q + P F +A R +E S E + S P WL EL+NAE IPM D P+ + S++E D++P ++ A P++++ E
Sbjct: 47 QEELHYIPIRVLGRGAFGEATLYRRTEDDSLVVWKEVDLTRLSEKERRDALNEIVILALLQHDNIIAYYNHFMDNTTLLIELEYCNGGNLYDKILRQKDKLFEEEMVVWYLFQIVSAVSCIHKAGILHRDIKTLNIFLTKANLIKLGDYGLAKKLNSEYSMAETLVGTPYYMSPELCQGVKYNFKSDIWAVGCVIFELLTLKRTFDATNPLNLCVKIVQGIRAMEVDSSQYSLELIQMVHSCLDQDPEQRPTADELLDRPLLRKRRREMEEKVTLLNAPTKRP--------RSSTVT----EAPIAVVTSRTSEVYVWGGGKSTPQKLDVIKSGCSARQVCAGNTHFAVVTVEKELYTWVNMQGGTKLHGQLGHGDKASYRQPKHVEKLQGKAIRQVSCGDDFTVCVTDEGQLYAFGSDYYGCMGVDKVAGPEVLEPMQLNFFLSNPVEQVSCGDNHVVVLTRNKEVYSWGCGEYGRLGLDSEEDYYTPQKVDVPK--ALIIVAVQCGCDGTFLLTQSGKVLACGLNEFNKLGLNQC--MSGIINHEAYHEVPYTTSFTLAKQLSFYKIRTIAPGKTHTAAIDERGRLLTFGCNKCGQLGVGNYKKRLGINLLGGPLGGKQVIRVSCGDEFTIAATDDNHIFAWGNGGNGRLAMTPTERPHGSDICTSWPRPIFGSLHHVPDLSCRGWHTILIVEKVLNSKTIRSNSSGLSIGTVFQSSSPGGGGGGGGGEEEDSQQESETPDPSGGFRGTMEA--DRGMEGLISPTEAMGNSNGASSSCPGWLRKELENAEFIPMP-----DSPSPLSAAFSESEKDTLPYEELQGLKVASEAPLEHKPQVE 866
The following BLAST results are available for this feature:
|
