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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062415 ID=TCONS_00062415|Name=TCONS_00062415|organism=Clytia hemisphaerica|type=transcript|length=1293bp
GNACCAAGACAAATATTATGATAATCAAAAACTCTGGGAAAGCATGAAAT
GGAACGCTGGCTCGATTGCCATTTTACTTGGATGGAGTAATTTGCTTCTT
TACCTTAAACGTTTCCCGTTTTTTGGTCTCTATGTTGTCATGTTTATGGA
GGTCTTCAAATCCTTAATCAGCGTGTTGCCGTTGTTCACTACCTTTATCA
TTGGCTTTGCGTTATCATTTTACGTTCTCATGGACGGGGAGACGGCGTTC
AAACATGTGGGAAGAGCAATCATGAAGACGGGGGTCATGACAATTGGAGA
ATTTGAATTTAACGGAATCATGACTGAATATTACGCGAAGAACGGTGTTA
GGGATAAAAATGTGCTTCCTTACCCTATCCTTACTTACCTTATTTTTACA
TTGTTTCTGGTACTGATGCCTATATTGACCATGAACTTTCTGGTCGGTCT
TGCTGCTGGTGATATTGAAGCGGTCCGAAAGAACGCTTATCTACGCATCT
TGCGCGCCCAAGTACACATCCTTAAAACCATCGAGTTGAGCTATCCAAAA
TGGCTACTACAAAGGTTTTATAGAGACCATGTGAATGAATACATTGATAC
GAAATTGACTTTCTGGGAAAGACTTCGTAAATGGTGGAAAAGTTCCGATT
ATGATTTTGTGATCGAGGAGCAAACGGACGCTGGTGAAAATGAACTGAAA
ATGATCAACTCCTTGGAATCTAATGGCGTTGAAatcgaaaaacaaaagaa
aaaactgaaACGACTTTGTGAAATTTTAGATGAACAAAAAGAACGATTCG
attatttatttgaaaaatttgagctTGAAGATTAATAATATAGTAAATGT
TTTTTTGCTTATGCAGATTTAGATTTCTGTGTCCGGTAAAGTTTGACCAA
AGTTTGTAGTTTTAACGGACACTTGTTAGTACTTGTTATTTTTATATTCa
attaactttaattttttttgcactttgtcACTCATAGGAATCATATAAGa
atactttatttttgtttagcAACATCTAAAAGATGCAATATTAGCTTTTT
CATAATACTGattgattttttgtaaatttttctatagattgtatcataat
ttaaataaaaatttgtttcaataaTCTTGTTTAAGGGTCTAAGGGGGCAT
GATAGGAAATGTTGTAGTCGGACTGGTTATCGCTGCACCGGTTTATTCAT
TATAtgttttaaaactgaaaatcaTTACCTAACCAAACTTTTAATATGAT
TTATGATAACTACatttgactctctctaattcgatcatCAAGG Run BLAST on NCBI protein sequence of TCONS_00062415-protein >TCONS_00062415-protein ID=TCONS_00062415-protein|Name=TCONS_00062415-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
XQDKYYDNQKLWESMKWNAGSIAILLGWSNLLLYLKRFPFFGLYVVMFME
VFKSLISVLPLFTTFIIGFALSFYVLMDGETAFKHVGRAIMKTGVMTIGE
FEFNGIMTEYYAKNGVRDKNVLPYPILTYLIFTLFLVLMPILTMNFLVGL
AAGDIEAVRKNAYLRILRAQVHILKTIELSYPKWLLQRFYRDHVNEYIDT
KLTFWERLRKWWKSSDYDFVIEEQTDAGENELKMINSLESNGVEIEKQKK
KLKRLCEILDEQKERFDYLFEKFELED Run BLAST on NCBI transcript from alignment at scaffold_364:240800..242928- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062415 ID=TCONS_00062415|Name=TCONS_00062415|organism=Clytia hemisphaerica|type=transcript|length=2129bp|location=Sequence derived from alignment at scaffold_364:240800..242928- (Clytia hemisphaerica)
GNACCAAGACAAATATTATGATAATCAAAAACTCTGGGAAAGCATGAAAT
GGAACGCTGGCTCGATTGCCATTTTACTTGGATGGAGTAATTTGCTTCTT
TACCTTAAACGTTTCCCGTTTTTTGGTCTCTATGTTGTCATGTTTATGGA
GGTCTTCAAATCCTTAATCAGCGTGTTGCCGTTGTTCACTACCTTTATCA
TTGGCTTTGCGTTATCATTTTACGTTCTCATGGACGGGGAGACGGCGTTC
AAACATGTGGGAAGAGCAATCATGAAGACGGGGGTCATGACAATTGGAGA
ATTTGAATTTAACGGAATCATGACTGAATATTACGCGAAGAACGGTGTTA
GGGATAAAAATGTGCTTCCTTACCCTATCCTTACTTACCTTATTTTTACA
TTGTTTCTGGTACTGATGCCTATATTGACCATGAACTTTCTGGTAAGTAG
TAGCTATACTTTCTTGTCGTCACTTTACACGTTTGTTACAGTACAAATTA
TATAAGAACATAAGGTTTAGATGGCCAAAATATTAAGAACAACATTTTAA
GGTATTGCGGGCACCTGATTTCTTAAAAAAATGGTGAAAATGATAACAGG
TTAAGAACAGATTAGGATTAAAATCTTCGCTGTTCTTATGAAAAATGTGT
AGCTGCTTAAAAATCTCATTGCATAGTTTTGCAGTAAAGTATTTTAATCA
AAAGTTTGATTTTAGAATTACAATCCCTTTGCACTTAGATTCCATAAAAT
AGATCAAAGTCTTTTCAAGGTCTTCGAAATTTATTGTATAAGGTATATTT
GATTGTGTCTCACTTGAAATTTGTCTCGAAAACTCAACTTTATCCTTCCA
GGTCGGTCTTGCTGCTGGTGATATTGAAGCGGTCCGAAAGAACGCTTATC
TACGCATCTTGCGCGCCCAAGTACACATCCTTAAAACCATCGAGTTGAGC
TATCCAAAATGGCTACTACAAAGGTTTTATAGAGACCATGTGAATGAATA
CATTGATACGAAATTGACTTTCTGGGAAAGGTAATACTCACTTTTTGTTA
AAAGCTTCCACTTGGTATAAATTGATATCCATAACGTCATTATAACGTGA
CGCGATAACGTGACCACGATAAACCAAAATCTTTGATCGGAGTTTTAAGG
GTAGCACTGTTCAATAGTGGTGTAAATGCATCGAGAGCGCTTGATCTACT
TTTCTTTGAATATATGTGATGGTGTAGGGCCGTTCGACGGTAAAACTGTA
GTGGCTTCTTTGCGGGCACTACTTTCAAAAAACTCCAATCAAAAATGGTA
TAAGGTCCATGGTATATAAAGATCAGTGGTTATAATATGTCTAAGATGAT
GTCGAAAATATTAGCATTCGTTACATTTATAACAAATTTATTTTATTTAT
GATTTCCCATTGCCACGCCTTTTTGATCACCGAACCTCACTTTCTGATTT
TCCTTAGACTTCGTAAATGGTGGAAAAGTTCCGATTATGATTTTGTGATC
GAGGAGCAAACGGACGCTGGTGAAAATGAACTGAAAATGATCAACTCCTT
GGAATCTAATGGCGTTGAAATCGAAAAACAAAAGAAAAAACTGAAACGAC
TTTGTGAAATTTTAGATGAACAAAAAGAACGATTCGATTATTTATTTGAA
AAATTTGAGCTTGAAGATTAATAATATAGTAAATGTTTTTTTGCTTATGC
AGATTTAGATTTCTGTGTCCGGTAAAGTTTGACCAAAGTTTGTAGTTTTA
ACGGACACTTGTTAGTACTTGTTATTTTTATATTCAATTAACTTTAATTT
TTTTTGCACTTTGTCACTCATAGGAATCATATAAGAATACTTTATTTTTG
TTTAGCAACATCTAAAAGATGCAATATTAGCTTTTTCATAATACTGATTG
ATTTTTTGTAAATTTTTCTATAGATTGTATCATAATTTAAATAAAAATTT
GTTTCAATAATCTTGTTTAAGGGTCTAAGGGGGCATGATAGGAAATGTTG
TAGTCGGACTGGTTATCGCTGCACCGGTTTATTCATTATATGTTTTAAAA
CTGAAAATCATTACCTAACCAAACTTTTAATATGATTTATGATAACTACA
TTTGACTCTCTCTAATTCGATCATCAAGG Coding sequence (CDS) from alignment at scaffold_364:240800..242928- >TCONS_00062415 ID=TCONS_00062415|Name=TCONS_00062415|organism=Clytia hemisphaerica|type=CDS|length=2502bp|location=Sequence derived from alignment at scaffold_364:240800..242928- (Clytia hemisphaerica)
ACTTCGTAAATGGTGGAAAAGTTCCGATTATGATTTTGTGATCGAGGAGC
AAACGGACGCTGGTGAAAATGAACTGAAAATGATCAACTCCTTGGAATCT
AATGGCGTTGAAATCGAAAAACAAAAGAAAAAACTGAAACGACTTTGTGA
AATTTTAGATGAACAAAAAGAACGATTCGATTATTTATTTGAAAAATTTG
AGCTTGAAGATTAAGTCGGTCTTGCTGCTGGTGATATTGAAGCGGTCCGA
AAGAACGCTTATCTACGCATCTTGCGCGCCCAAGTACACATCCTTAAAAC
CATCGAGTTGAGCTATCCAAAATGGCTACTACAAAGGTTTTATAGAGACC
ATGTGAATGAATACATTGATACGAAATTGACTTTCTGGGAAAGNACCAAG
ACAAATATTATGATAATCAAAAACTCTGGGAAAGCATGAAATGGAACGCT
GGCTCGATTGCCATTTTACTTGGATGGAGTAATTTGCTTCTTTACCTTAA
ACGTTTCCCGTTTTTTGGTCTCTATGTTGTCATGTTTATGGAGGTCTTCA
AATCCTTAATCAGCGTGTTGCCGTTGTTCACTACCTTTATCATTGGCTTT
GCGTTATCATTTTACGTTCTCATGGACGGGGAGACGGCGTTCAAACATGT
GGGAAGAGCAATCATGAAGACGGGGGTCATGACAATTGGAGAATTTGAAT
TTAACGGAATCATGACTGAATATTACGCGAAGAACGGTGTTAGGGATAAA
AATGTGCTTCCTTACCCTATCCTTACTTACCTTATTTTTACATTGTTTCT
GGTACTGATGCCTATATTGACCATGAACTTTCTGACTTCGTAAATGGTGG
AAAAGTTCCGATTATGATTTTGTGATCGAGGAGCAAACGGACGCTGGTGA
AAATGAACTGAAAATGATCAACTCCTTGGAATCTAATGGCGTTGAAATCG
AAAAACAAAAGAAAAAACTGAAACGACTTTGTGAAATTTTAGATGAACAA
AAAGAACGATTCGATTATTTATTTGAAAAATTTGAGCTTGAAGATTAAGT
CGGTCTTGCTGCTGGTGATATTGAAGCGGTCCGAAAGAACGCTTATCTAC
GCATCTTGCGCGCCCAAGTACACATCCTTAAAACCATCGAGTTGAGCTAT
CCAAAATGGCTACTACAAAGGTTTTATAGAGACCATGTGAATGAATACAT
TGATACGAAATTGACTTTCTGGGAAAGNACCAAGACAAATATTATGATAA
TCAAAAACTCTGGGAAAGCATGAAATGGAACGCTGGCTCGATTGCCATTT
TACTTGGATGGAGTAATTTGCTTCTTTACCTTAAACGTTTCCCGTTTTTT
GGTCTCTATGTTGTCATGTTTATGGAGGTCTTCAAATCCTTAATCAGCGT
GTTGCCGTTGTTCACTACCTTTATCATTGGCTTTGCGTTATCATTTTACG
TTCTCATGGACGGGGAGACGGCGTTCAAACATGTGGGAAGAGCAATCATG
AAGACGGGGGTCATGACAATTGGAGAATTTGAATTTAACGGAATCATGAC
TGAATATTACGCGAAGAACGGTGTTAGGGATAAAAATGTGCTTCCTTACC
CTATCCTTACTTACCTTATTTTTACATTGTTTCTGGTACTGATGCCTATA
TTGACCATGAACTTTCTGACTTCGTAAATGGTGGAAAAGTTCCGATTATG
ATTTTGTGATCGAGGAGCAAACGGACGCTGGTGAAAATGAACTGAAAATG
ATCAACTCCTTGGAATCTAATGGCGTTGAAATCGAAAAACAAAAGAAAAA
ACTGAAACGACTTTGTGAAATTTTAGATGAACAAAAAGAACGATTCGATT
ATTTATTTGAAAAATTTGAGCTTGAAGATTAAGTCGGTCTTGCTGCTGGT
GATATTGAAGCGGTCCGAAAGAACGCTTATCTACGCATCTTGCGCGCCCA
AGTACACATCCTTAAAACCATCGAGTTGAGCTATCCAAAATGGCTACTAC
AAAGGTTTTATAGAGACCATGTGAATGAATACATTGATACGAAATTGACT
TTCTGGGAAAGNACCAAGACAAATATTATGATAATCAAAAACTCTGGGAA
AGCATGAAATGGAACGCTGGCTCGATTGCCATTTTACTTGGATGGAGTAA
TTTGCTTCTTTACCTTAAACGTTTCCCGTTTTTTGGTCTCTATGTTGTCA
TGTTTATGGAGGTCTTCAAATCCTTAATCAGCGTGTTGCCGTTGTTCACT
ACCTTTATCATTGGCTTTGCGTTATCATTTTACGTTCTCATGGACGGGGA
GACGGCGTTCAAACATGTGGGAAGAGCAATCATGAAGACGGGGGTCATGA
CAATTGGAGAATTTGAATTTAACGGAATCATGACTGAATATTACGCGAAG
AACGGTGTTAGGGATAAAAATGTGCTTCCTTACCCTATCCTTACTTACCT
TATTTTTACATTGTTTCTGGTACTGATGCCTATATTGACCATGAACTTTC
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062415-exon-scaffold_364-1575043694:242487..242928 | TCONS_00062415-exon-scaffold_364-1575043694:242487..242928 | Clytia hemisphaerica | exon |
| TCONS_00062415-exon-scaffold_364-1575043694:241899..242077 | TCONS_00062415-exon-scaffold_364-1575043694:241899..242077 | Clytia hemisphaerica | exon |
| TCONS_00062415-exon-scaffold_364-1575043694:240800..241471 | TCONS_00062415-exon-scaffold_364-1575043694:240800..241471 | Clytia hemisphaerica | exon |
| TCONS_00062415-exon-scaffold_364-1510915933:242487..242928 | TCONS_00062415-exon-scaffold_364-1510915933:242487..242928 | Clytia hemisphaerica | exon |
| TCONS_00062415-exon-scaffold_364-1510915933:241899..242077 | TCONS_00062415-exon-scaffold_364-1510915933:241899..242077 | Clytia hemisphaerica | exon |
| TCONS_00062415-exon-scaffold_364-1510915933:240800..241471 | TCONS_00062415-exon-scaffold_364-1510915933:240800..241471 | Clytia hemisphaerica | exon |
| TCONS_00062415-exon-scaffold_364-1491911889:242487..242928 | TCONS_00062415-exon-scaffold_364-1491911889:242487..242928 | Clytia hemisphaerica | exon |
| TCONS_00062415-exon-scaffold_364-1491911889:241899..242077 | TCONS_00062415-exon-scaffold_364-1491911889:241899..242077 | Clytia hemisphaerica | exon |
| TCONS_00062415-exon-scaffold_364-1491911889:240800..241471 | TCONS_00062415-exon-scaffold_364-1491911889:240800..241471 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_364 | supercontig | scaffold_364:240800..242928 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005821 | Ion_trans_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005216 | ion channel activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
| GO:0006811 | ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006811 |
ion transport |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005216 |
ion channel activity |
Blast
BLAST of TCONS_00062415 vs. Swiss-Prot (Human)
Match: TRPA1 (Transient receptor potential cation channel subfamily A member 1 OS=Homo sapiens GN=TRPA1 PE=1 SV=3) HSP 1 Score: 117.472 bits (293), Expect = 6.163e-28 Identity = 79/262 (30.15%), Postives = 137/262 (52.29%), Query Frame = 2
Query: 44 MKWNAGSIAILLGWSNLLLYLKRFPFFGLYVVMFMEVFKSLISVLPLFTTFIIGFALSFYVLMDGETAFKHVGRAIMKTGVMTIGEFEFNGIMTEYYAKNGVRDKNVLPYPILTYLIFTLFLVLMPILTMNFLVGLAAGDIEAVRKNAYLRILRAQVHILKTIELSYPKWLLQRFYRDHVNEYIDTKLTF-WERLRKWWKSSDYDFVIEEQTDAGENELKMINSLESNGVEIEKQKKKLKRLCEILDEQKERFDYLFEKFEL 826
++W G+IA+ W N LLYL+RF G+++VM + K+L+ +F ++ F LSFY+L++ + F +I++T M +G+ + E Y +N L +P+L++ F + +PI+ MN L+GLA GDI V+K+A L+ + QV + ++E P W L++ +D K T + + + F T GE ++ N+ +S +EI KQK +LK L +L++Q E + +K E+
Sbjct: 830 LQWQCGAIAVYFYWMNFLLYLQRFENCGIFIVMLEVILKTLLRSTVVFIFLLLAFGLSFYILLNLQDPFSSPLLSIIQTFSMMLGDINYRESFLEPYLRNE------LAHPVLSFAQLVSFTIFVPIVLMNLLIGLAVGDIAEVQKHASLKRIAMQVELHTSLEKKLPLWFLRK---------VDQKSTIVYPNKPRSGGMLFHIFCFLFCT--GEIRQEIPNADKSLEMEILKQKYRLKDLTFLLEKQHELIKLIIQKMEI 1074
The following BLAST results are available for this feature:
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