TCONS_00062487 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062487
Unique NameTCONS_00062487
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length679

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062487 ID=TCONS_00062487|Name=TCONS_00062487|organism=Clytia hemisphaerica|type=transcript|length=679bp
AAATAAACGACTTCTATTACATTGGCGACATGTCGGATAGTTATGACGAA
AAAACATATCATAAACGAGACGATTTAACGTTACATTGCATCCCAGAGGA
AGGCAGCGAATTGACGCACGAAAATTTCCGACACTCCGGTGTCCGTCTAC
TACCGACGTACGGAAACAACCACGACGAAATTCAATCAAACGATTCAACA
TGTACATCAATTGAGGAAGGTGGTACAACCATTACCCGAACAGTAAGCAA
AAACACCAAACGCAAGATATTTCTAGCAGTGTTTTTATTCTTGGTGACGC
TTTCGCAAGGATTTATGGCGTGGTATGGAGCCGAGAAGACACGATGTAAA
AAGACGACAACAAAGAGCGCCACATTGGCACCTATTTTCATGTTCGGTAT
TGCAGTTATCGAAGTATTTTTCTCTACTCTCGTCATTACTATAACATTCA
CACGAAAATTGAGAGAGAAATACAAAGTCTGTACTAACACTCGCCTTATT
GTCAAACTAGTGACCGCTTGCTTGATAGTACTGCTTCTGATCTATCTCTC
GCTGGTGTGTTTTGTGGAACTTTTCAGCGAAGAATATGAAGGGTGTCGTT
ACAAAAAGATTCTGTTGAAAGCACAAGCTATAATGACTGTCGTCCAAGGC
TGCTTATTTGTCATTCTGATATACATTTA
Run BLAST on NCBI

protein sequence of TCONS_00062487-protein

>TCONS_00062487-protein ID=TCONS_00062487-protein|Name=TCONS_00062487-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
INDFYYIGDMSDSYDEKTYHKRDDLTLHCIPEEGSELTHENFRHSGVRLL
PTYGNNHDEIQSNDSTCTSIEEGGTTITRTVSKNTKRKIFLAVFLFLVTL
SQGFMAWYGAEKTRCKKTTTKSATLAPIFMFGIAVIEVFFSTLVITITFT
RKLREKYKVCTNTRLIVKLVTACLIVLLLIYLSLVCFVELFSEEYEGCRY
KKILLKAQAIMTVVQGCLFVILIYI
Run BLAST on NCBI

transcript from alignment at scaffold_365:128508..129186

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062487 ID=TCONS_00062487|Name=TCONS_00062487|organism=Clytia hemisphaerica|type=transcript|length=679bp|location=Sequence derived from alignment at scaffold_365:128508..129186 (Clytia hemisphaerica)
TAAATGTATATCAGAATGACAAATAAGCAGCCTTGGACGACAGTCATTAT
AGCTTGTGCTTTCAACAGAATCTTTTTGTAACGACACCCTTCATATTCTT
CGCTGAAAAGTTCCACAAAACACACCAGCGAGAGATAGATCAGAAGCAGT
ACTATCAAGCAAGCGGTCACTAGTTTGACAATAAGGCGAGTGTTAGTACA
GACTTTGTATTTCTCTCTCAATTTTCGTGTGAATGTTATAGTAATGACGA
GAGTAGAGAAAAATACTTCGATAACTGCAATACCGAACATGAAAATAGGT
GCCAATGTGGCGCTCTTTGTTGTCGTCTTTTTACATCGTGTCTTCTCGGC
TCCATACCACGCCATAAATCCTTGCGAAAGCGTCACCAAGAATAAAAACA
CTGCTAGAAATATCTTGCGTTTGGTGTTTTTGCTTACTGTTCGGGTAATG
GTTGTACCACCTTCCTCAATTGATGTACATGTTGAATCGTTTGATTGAAT
TTCGTCGTGGTTGTTTCCGTACGTCGGTAGTAGACGGACACCGGAGTGTC
GGAAATTTTCGTGCGTCAATTCGCTGCCTTCCTCTGGGATGCAATGTAAC
GTTAAATCGTCTCGTTTATGATATGTTTTTTCGTCATAACTATCCGACAT
GTCGCCAATGTAATAGAAGTCGTTTATTT

Coding sequence (CDS) from alignment at scaffold_365:128508..129186

>TCONS_00062487 ID=TCONS_00062487|Name=TCONS_00062487|organism=Clytia hemisphaerica|type=CDS|length=675bp|location=Sequence derived from alignment at scaffold_365:128508..129186 (Clytia hemisphaerica)
AATGTATATCAGAATGACAAATAAGCAGCCTTGGACGACAGTCATTATAG
CTTGTGCTTTCAACAGAATCTTTTTGTAACGACACCCTTCATATTCTTCG
CTGAAAAGTTCCACAAAACACACCAGCGAGAGATAGATCAGAAGCAGTAC
TATCAAGCAAGCGGTCACTAGTTTGACAATAAGGCGAGTGTTAGTACAGA
CTTTGTATTTCTCTCTCAATTTTCGTGTGAATGTTATAGTAATGACGAGA
GTAGAGAAAAATACTTCGATAACTGCAATACCGAACATGAAAATAGGTGC
CAATGTGGCGCTCTTTGTTGTCGTCTTTTTACATCGTGTCTTCTCGGCTC
CATACCACGCCATAAATCCTTGCGAAAGCGTCACCAAGAATAAAAACACT
GCTAGAAATATCTTGCGTTTGGTGTTTTTGCTTACTGTTCGGGTAATGGT
TGTACCACCTTCCTCAATTGATGTACATGTTGAATCGTTTGATTGAATTT
CGTCGTGGTTGTTTCCGTACGTCGGTAGTAGACGGACACCGGAGTGTCGG
AAATTTTCGTGCGTCAATTCGCTGCCTTCCTCTGGGATGCAATGTAACGT
TAAATCGTCTCGTTTATGATATGTTTTTTCGTCATAACTATCCGACATGT
CGCCAATGTAATAGAAGTCGTTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039152XLOC_039152Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062487-proteinTCONS_00062487-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062487-exon-scaffold_365-1491911889:128508..129186TCONS_00062487-exon-scaffold_365-1491911889:128508..129186Clytia hemisphaericaexon
TCONS_00062487-exon-scaffold_365-1510915933:128508..129186TCONS_00062487-exon-scaffold_365-1510915933:128508..129186Clytia hemisphaericaexon
TCONS_00062487-exon-scaffold_365-1575043694:128508..129186TCONS_00062487-exon-scaffold_365-1575043694:128508..129186Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_365supercontigscaffold_365:128508..129186 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.226454	0	0.598272	0.585316	0.407181	0.884839	3.97894	4.81529	5.02514	7.72147	8.56531	9.75283	14.5085	16.0057	15.0876	23.827	6.45992	11.8485	22.4677	10.8318	4.6709	8.00965	1.64443	1.25897	3.07969	2.53156	1.03504	0.552313	0.251346	0.0853606
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062487 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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