TCONS_00062569 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062569
Unique NameTCONS_00062569
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3030

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062569 ID=TCONS_00062569|Name=TCONS_00062569|organism=Clytia hemisphaerica|type=transcript|length=3030bp
CAATCNGACTGTGAGTAATAGAAGAACTTTCAAATGGACAGTAATTAATC
TATATATTATCTATCAATCACAAATATAATATTCACGAAGTTTCCGTATt
acttttcataattttatttggCTTTGCGTTACCGTTTCCCAACGATACAA
TTTCATTCTGTAGACTTTCGTCCAAAGACCGTTTCAAACTTGAAATCTTT
TCCAATGCTTCTTTCTGAATAGAATGTAAACTTAAGTCGTGTTGTTTTCT
TGGAGAAGGGTTGTCCCTCCGTtcaatatcaaagaaattttcggttttaa
tttcattatgaGGAATCAATGGGTGGTTTGTTTCATCACCATTCTTCCTC
TTGTCCAAGGAGGTTTTCTTTCGGAAAACCGAAATCTGTGAATTTAGATT
GGACCTCGTTCTGGGTGTGTTTCTTGATGTTTTCTTCATGTTTGCAGCTT
CCATTTGAATATATCTTGATGGCTTAGGAGCCAACCTTCTCAGTCTTGAG
AGAGGAGAAGGAAAAGCAGGGGGCGAAGTTATCTTAGAAGTTGTAGTACG
GTAAGGGATCGGAACTTTGTTTGGTTTACGGCCTGATACATCGATGGTAT
AATTCGAGGGTAGGACAGGAGTTGTTTGATGCTGAGATGCAGTTTCGGGG
GTTTTTGGGTTTGCGATTTTGTCACGTTCGAGaagattttttgtaatttt
atcgATTGTTTTCGAATCGTAGTGGCATTCGTTTAATTCTCGTAAATCGA
TAGCATCTCCGTATTGTTTTCGTAAAAGACGATATATAGTGTCTTTTGAC
TGCTGTAACTTGACACCTGGCGTTGGATAAGTTGGCCCTGGGTTGGTTGG
CTTAGTATGCTCTTTTACAACATTGTTTTCTAATGATACAGAGGGTGTTT
TTGAGAGCTTTTGGAGCTCTCCGTTATCGGTATTATTCTTCAGAGTCGCG
TTATCTATATTGGTAGACCCATTACTAGGCAAAATTgtcttgtttttgat
tttctcgTTAAAGCATTCGACAATGTTTTGAAGCTTTTTATTAAAAGATG
TGGCAGTATTATTTTGTGGCACCGAAGCAGATGTGACCGGTATAAGATAT
ATCGGTGCTTTTATCGGAACACCGGGAATAGCTGATATGGCTGAAATATC
GATCGGCCGATGCGGGCCGTTTGAAGCAACTGATTTCATCTTATTGGACG
GTCTCACAGAAGAAACAGACTTGGTGGGCAAGATTGGAGTAATCGAATTG
TTGGCTTTCGAGGAAGAAGTGCTCTGAATGGATGTATCCATAGACAaagc
gatctgattggatgaatttTTTGGAGGATTTAGCTGATTGGAGTATTTGA
CAGACACAGCCATCTGCTTGGCAGGTTTCGCAGTCGGGACCATTTGATCA
GAGGATGGGTGTAGAACATACGTCGGTAATTCGGGAAGGTCGATGCTCAT
GAATTCAGGAGAATCGACTGATGTTGAGGAGGGTTTTTCAGTTGTTCGTT
TTACTTTAGAGAAACTGGCTATTTTGTCTGCGGTGCGTGTGAGAGTTGAA
GAGCGTATGGAGGAATATTGAGGTTTTTTAGTAGCTTGCTTAGAGGTAtc
ttgattggttgatattatTATCACGGTTCGGATCGAAGGGTCCTGGTTGA
CTGTTGTAGCAGTCAAGTTTTGAATCGGTAGAGCCTGATTGGTTGATTTA
GAAGTCACGTGTTGAATTGAATGAgactgattggttgattgaacAGCAAC
TTGTTCATCCACTTGTTCCATCGATGAAGTCTGATTGTTTAGTTGAGCAG
TCACGTGTTTAATTAAAGGAGCATGATTGGTTGATTTAGCACTCATGTGT
TGAATCGAAGGAGCATGATTGGTTGACTTAACAGTTACGTGGTCACTCGA
AACAGTCACGTGTTGAATCGGTAGAGCCTGATTGGTTGATTTAGCAGTCA
CGTGTTGAACAGaagaattttgattggttgattttacAATTACGTGGTCA
ATCGAAGCAGGCACGTGTTGAATCAAAGGAGCCTGGTCGGTTTTTTTGGT
AGTCTCGTGTTGAGTCGAAGCAGCCTGATTTAGTGACACAACTAGAGTTT
GTTGAGCTTGTTTTTTTGACGAAGCTGGTGTACCATTCACCGGAACAGCT
GGAAGTAAACAAACCGTTTTGGTGGAACCTCGTTTGGCTTTTTTCAAATA
CTTCTTTTCTAAGCTTTGCAATCCGTCTTTAAAAGCTTTACGAAATGTTT
CGTGCATGAAGTCGTTGGCAAGTTTATCAATGTAATAATTTAAACCTTCC
ATTATGGACATACTATGATCGTTaacatttttcattgttttgaataTGGG
TTGCGGTAGGTATTTGACGATTTGCCGTTCTTCAGATTGCGTTCCTTTCG
AGGATTGCGTGGTCTCTGTAGAGATGCTTCTCACTTGTTGATCGATACAG
AGATAATCAATCGTGAAAAAAGGACTCGATTTATACAACGGACTTATCGA
TTCAAAATCGAGTGTATACATCTTGAAAACTTGAAACATGTGTCGACAGA
GTAAAGGATTGTTGATCCATTCAGTGCAAGTGCATGATGGGAAAATCGAT
TGGTCACCAAGGGATACATGAAAACGATCGAGGATTTTATCTTTGAGCTC
GAAGACTGTATACTCTTGAGTGGAAACTTTCTGGATGTGTGTTTCTACTT
GTTGAGGTGCACTCAGTATTGGATGACAATGTGACATTAAGAAGATTGGT
AGCTTGTAGTTATGTACTAAAGATTTGCTGTTTTTGAGAACACAGTGCCC
GGCAGTGAACAGGCTTTGATTCTTTTGAACGTAACTGAAAAAAAAGCAGT
TGTGAGAAACATGAAATGATTATAAAAAATGTTGTAAGtaaaattccaga
aaaaaacagtataccccctgttgaggaggtccatcatttcgtggctggaa
atgctgcaaccccctggaattccaggcaatttcaggcttaaacccctctg
gaattcagaattttagtaggatttaaaaag
Run BLAST on NCBI

transcript from alignment at scaffold_369:20404..23490-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062569 ID=TCONS_00062569|Name=TCONS_00062569|organism=Clytia hemisphaerica|type=transcript|length=3087bp|location=Sequence derived from alignment at scaffold_369:20404..23490- (Clytia hemisphaerica)
CAATCNGACTGTGAGTAATAGAAGAACTTTCAAATGGACAGTAATTAATC
TATATATTATCTATCAATCACAAATATAATATTCACGAAGTTTCCGTATT
ACTTTTCATAATTTTATTTGGCTTTGCGTTACCGTTTCCCAACGATACAA
TTTCATTCTGTAGACTTTCGTCCAAAGACCGTTTCAAACTTGAAATCTTT
TCCAATGCTTCTTTCTGAATAGAATGTAAACTTAAGTCGTGTTGTTTTCT
TGGAGAAGGGTTGTCCCTCCGTTCAATATCAAAGAAATTTTCGGTTTTAA
TTTCATTATGAGGAATCAATGGGTGGTTTGTTTCATCACCATTCTTCCTC
TTGTCCAAGGAGGTTTTCTTTCGGAAAACCGAAATCTGTGAATTTAGATT
GGACCTCGTTCTGGGTGTGTTTCTTGATGTTTTCTTCATGTTTGCAGCTT
CCATTTGAATATATCTTGATGGCTTAGGAGCCAACCTTCTCAGTCTTGAG
AGAGGAGAAGGAAAAGCAGGGGGCGAAGTTATCTTAGAAGTTGTAGTACG
GTAAGGGATCGGAACTTTGTTTGGTTTACGGCCTGATACATCGATGGTAT
AATTCGAGGGTAGGACAGGAGTTGTTTGATGCTGAGATGCAGTTTCGGGG
GTTTTTGGGTTTGCGATTTTGTCACGTTCGAGAAGATTTTTTGTAATTTT
ATCGATTGTTTTCGAATCGTAGTGGCATTCGTTTAATTCTCGTAAATCGA
TAGCATCTCCGTATTGTTTTCGTAAAAGACGATATATAGTGTCTTTTGAC
TGCTGTAACTTGACACCTGGCGTTGGATAAGTTGGCCCTGGGTTGGTTGG
CTTAGTATGCTCTTTTACAACATTGTTTTCTAATGATACAGAGGGTGTTT
TTGAGAGCTTTTGGAGCTCTCCGTTATCGGTATTATTCTTCAGAGTCGCG
TTATCTATATTGGTAGACCCATTACTAGGCAAAATTGTCTTGTTTTTGAT
TTTCTCGTTAAAGCATTCGACAATGTTTTGAAGCTTTTTATTAAAAGATG
TGGCAGTATTATTTTGTGGCACCGAAGCAGATGTGACCGGTATAAGATAT
ATCGGTGCTTTTATCGGAACACCGGGAATAGCTGATATGGCTGAAATATC
GATCGGCCGATGCGGGCCGTTTGAAGCAACTGATTTCATCTTATTGGACG
GTCTCACAGAAGAAACAGACTTGGTGGGCAAGATTGGAGTAATCGAATTG
TTGGCTTTCGAGGAAGAAGTGCTCTGAATGGATGTATCCATAGACAAAGC
GATCTGATTGGATGAATTTTTTGGAGGATTTAGCTGATTGGAGTATTTGA
CAGACACAGCCATCTGCTTGGCAGGTTTCGCAGTCGGGACCATTTGATCA
GAGGATGGGTGTAGAACATACGTCGGTAATTCGGGAAGGTCGATGCTCAT
GAATTCAGGAGAATCGACTGATGTTGAGGAGGGTTTTTCAGTTGTTCGTT
TTACTTTAGAGAAACTGGCTATTTTGTCTGCGGTGCGTGTGAGAGTTGAA
GAGCGTATGGAGGAATATTGAGGTTTTTTAGTAGCTTGCTTAGAGGTATC
TTGATTGGTTGATATTATTATCACGGTTCGGATCGAAGGGTCCTGGTTGA
CTGTTGTAGCAGTCAAGTTTTGAATCGGTAGAGCCTGATTGGTTGATTTA
GAAGTCACGTGTTGAATTGAATGAGACTGATTGGTTGATTGAACAGCAAC
TTGTTCATCCACTTGTTCCATCGATGAAGTCTGATTGTTTAGTTGAGCAG
TCACGTGTTTAATTAAAGGAGCATGATTGGTTGATTTAGCACTCATGTGT
TGAATCGAAGGAGCATGATTGGTTGACTTAACAGTTACGTGGTCACTCGA
AACAGTCACGTGTTGAATCGGTAGAGCCTGATTGGTTGATTTAGCAGTCA
CGTGTTGAACATAAGGGTTTTGATTGGTTGATTTGACAGTTACGTGGTCA
ATCGAAGNATGTTGAACAGAAGAATTTTGATTGGTTGATTTTACAATTAC
GTGGTCAATCGAAGCAGGCACGTGTTGAATCAAAGGAGCCTGGTCGGTTT
TTTTGGTAGTCTCGTGTTGAGTCGAAGCAGCCTGATTTAGTGACACAACT
AGAGTTTGTTGAGCTTGTTTTTTTGACGAAGCTGGTGTACCATTCACCGG
AACAGCTGGAAGTAAACAAACCGTTTTGGTGGAACCTCGTTTGGCTTTTT
TCAAATACTTCTTTTCTAAGCTTTGCAATCCGTCTTTAAAAGCTTTACGA
AATGTTTCGTGCATGAAGTCGTTGGCAAGTTTATCAATGTAATAATTTAA
ACCTTCCATTATGGACATACTATGATCGTTAACATTTTTCATTGTTTTGA
ATATGGGTTGCGGTAGGTATTTGACGATTTGCCGTTCTTCAGATTGCGTT
CCTTTCGAGGATTGCGTGGTCTCTGTAGAGATGCTTCTCACTTGTTGATC
GATACAGAGATAATCAATCGTGAAAAAAGGACTCGATTTATACAACGGAC
TTATCGATTCAAAATCGAGTGTATACATCTTGAAAACTTGAAACATGTGT
CGACAGAGTAAAGGATTGTTGATCCATTCAGTGCAAGTGCATGATGGGAA
AATCGATTGGTCACCAAGGGATACATGAAAACGATCGAGGATTTTATCTT
TGAGCTCGAAGACTGTATACTCTTGAGTGGAAACTTTCTGGATGTGTGTT
TCTACTTGTTGAGGTGCACTCAGTATTGGATGACAATGTGACATTAAGAA
GATTGGTAGCTTGTAGTTATGTACTAAAGATTTGCTGTTTTTGAGAACAC
AGTGCCCGGCAGTGAACAGGCTTTGATTCTTTTGAACGTAACTGAAAAAA
AAGCAGTTGTGAGAAACATGAAATGATTATAAAAAATGTTGTAAGTAAAA
TTCCAGAAAAAAACAGTATACCCCCTGTTGAGGAGGTCCATCATTTCGTG
GCTGGAAATGCTGCAACCCCCTGGAATTCCAGGCAATTTCAGGCTTAAAC
CCCTCTGGAATTCAGAATTTTAGTAGGATTTAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039201XLOC_039201Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062569-exon-scaffold_369-1575043694:21531..23490TCONS_00062569-exon-scaffold_369-1575043694:21531..23490Clytia hemisphaericaexon
TCONS_00062569-exon-scaffold_369-1575043694:20404..21473TCONS_00062569-exon-scaffold_369-1575043694:20404..21473Clytia hemisphaericaexon
TCONS_00062569-exon-scaffold_369-1510915933:21531..23490TCONS_00062569-exon-scaffold_369-1510915933:21531..23490Clytia hemisphaericaexon
TCONS_00062569-exon-scaffold_369-1510915933:20404..21473TCONS_00062569-exon-scaffold_369-1510915933:20404..21473Clytia hemisphaericaexon
TCONS_00062569-exon-scaffold_369-1491911889:21531..23490TCONS_00062569-exon-scaffold_369-1491911889:21531..23490Clytia hemisphaericaexon
TCONS_00062569-exon-scaffold_369-1491911889:20404..21473TCONS_00062569-exon-scaffold_369-1491911889:20404..21473Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_369supercontigscaffold_369:20404..23490 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.62826	1.30772	0.679378	0.623359	4.16421	2.94068	1.79685	2.00555	1.64654	1.59441	0.760725	0.791034	1.10767	1.95271	1.64812	1.70494	1.94361	1.58834	1.58124	1.28359	1.03718	0.54763	1.33953	1.2048	1.69599	2.27947	1.26922	0.754287	1.23182	0.70194
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007527Znf_SWIM
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062569 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top