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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062647 ID=TCONS_00062647|Name=TCONS_00062647|organism=Clytia hemisphaerica|type=transcript|length=1019bp
agccgagTGGTGAGGATGCTCTGAAGCTGAAAAGGGAATCTAATATCAAT
TTTAACAACAAATCTCCATCTATCTCTTCAATCTCTCAAACAAATCAACC
AAGAAGTACTTCAACTGAACCTACAACAAtacaatatttatttttccttc
TAATTTCTGCTCTTTCAACCAATTCAACCATGGAATTTGAAACCTTCAAA
AATGACATCATCAATACCTTGGACAACAAACTTGATGGTCTCAAGATCTa
tatcaacaacaaaatacatgaACTTAGAACTGAATATGATGAAAAAATAA
CAGCTCTCCATAACAAGATAAATGAACTTGAAGCTCAGGTGAAACATCCA
TGGGCTGATAGTTATAATGATGCCAATCCTGAAGCTGATGCCGAACCCAA
CAAACCAAACGTAAATAAACAACTCCAGCAACTCATCAACAAAGTGGTGA
GTCTTGAAGATCACCAAGAAGAACAAATTGATAGGACACTACGGTTCACC
CTGATTTTCCGCAACGTTAAATATGACCCACAATCCGAAACCGATGCCAA
CAAAACGATAGACCTATTAGCAAATACCATAAACAGTCACTGTCCCACCC
TTGGAACAGAATATATAAAGAATGCCGTTGAACGAGGTCACCGCAACTTT
AAACAAAATAGAGTGACCAATGATCGTAATCGAAACTCATTTCCGTCAAT
CAGTGTGAAATTTTTATCTTGGAAGGACTCAAGTGATATCCTGTCAACTA
TCATTAAAGCCAACAAAAATGGTCGTGAGCATCTTTCCGTTTCtcaacaa
ttttcaaaaggaaCTACTCAGAGGCGAAATAACGCCCTGAAACAAAGGAA
ACTCTTGTCTGATACCAACAAAAACATGGAGTATAGACTAATCTATCCAG
CCACCCTCACTGGGAGGGTCAAAAACTCCAACacaaaatttgaattgatt
GAAAAGTTTTAGATAAACATTCTCCCTTTAAAGTTGTGTAGCCATTGATA
CCttcataagttttttttt Run BLAST on NCBI protein sequence of TCONS_00062647-protein >TCONS_00062647-protein ID=TCONS_00062647-protein|Name=TCONS_00062647-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
PSGEDALKLKRESNINFNNKSPSISSISQTNQPRSTSTEPTTIQYLFFLL
ISALSTNSTMEFETFKNDIINTLDNKLDGLKIYINNKIHELRTEYDEKIT
ALHNKINELEAQVKHPWADSYNDANPEADAEPNKPNVNKQLQQLINKVVS
LEDHQEEQIDRTLRFTLIFRNVKYDPQSETDANKTIDLLANTINSHCPTL
GTEYIKNAVERGHRNFKQNRVTNDRNRNSFPSISVKFLSWKDSSDILSTI
IKANKNGREHLSVSQQFSKGTTQRRNNALKQRKLLSDTNKNMEYRLIYPA
TLTGRVKNSNTKFELIEKF Run BLAST on NCBI transcript from alignment at scaffold_370:26231..27249 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062647 ID=TCONS_00062647|Name=TCONS_00062647|organism=Clytia hemisphaerica|type=transcript|length=1019bp|location=Sequence derived from alignment at scaffold_370:26231..27249 (Clytia hemisphaerica)
aaaaaaaaacttatgaaGGTATCAATGGCTACACAACTTTAAAGGGAGAA
TGTTTATCTAAAACTTTTCaatcaattcaaattttgtGTTGGAGTTTTTG
ACCCTCCCAGTGAGGGTGGCTGGATAGATTAGTCTATACTCCATGTTTTT
GTTGGTATCAGACAAGAGTTTCCTTTGTTTCAGGGCGTTATTTCGCCTCT
GAGTAGttccttttgaaaattgttgaGAAACGGAAAGATGCTCACGACCA
TTTTTGTTGGCTTTAATGATAGTTGACAGGATATCACTTGAGTCCTTCCA
AGATAAAAATTTCACACTGATTGACGGAAATGAGTTTCGATTACGATCAT
TGGTCACTCTATTTTGTTTAAAGTTGCGGTGACCTCGTTCAACGGCATTC
TTTATATATTCTGTTCCAAGGGTGGGACAGTGACTGTTTATGGTATTTGC
TAATAGGTCTATCGTTTTGTTGGCATCGGTTTCGGATTGTGGGTCATATT
TAACGTTGCGGAAAATCAGGGTGAACCGTAGTGTCCTATCAATTTGTTCT
TCTTGGTGATCTTCAAGACTCACCACTTTGTTGATGAGTTGCTGGAGTTG
TTTATTTACGTTTGGTTTGTTGGGTTCGGCATCAGCTTCAGGATTGGCAT
CATTATAACTATCAGCCCATGGATGTTTCACCTGAGCTTCAAGTTCATTT
ATCTTGTTATGGAGAGCTGTTATTTTTTCATCATATTCAGTTCTAAGTtc
atgtattttgttgttgatatAGATCTTGAGACCATCAAGTTTGTTGTCCA
AGGTATTGATGATGTCATTTTTGAAGGTTTCAAATTCCATGGTTGAATTG
GTTGAAAGAGCAGAAATTAgaaggaaaaataaatattgtaTTGTTGTAGG
TTCAGTTGAAGTACTTCTTGGTTGATTTGTTTGAGAGATTGAAGAGATAG
ATGGAGATTTGTTGTTAAAATTGATATTAGATTCCCTTTTCAGCTTCAGA
GCATCCTCACCActcggct Coding sequence (CDS) from alignment at scaffold_370:26231..27249 >TCONS_00062647 ID=TCONS_00062647|Name=TCONS_00062647|organism=Clytia hemisphaerica|type=CDS|length=960bp|location=Sequence derived from alignment at scaffold_370:26231..27249 (Clytia hemisphaerica)
CTAAAACTTTTCaatcaattcaaattttgtGTTGGAGTTTTTGACCCTCC
CAGTGAGGGTGGCTGGATAGATTAGTCTATACTCCATGTTTTTGTTGGTA
TCAGACAAGAGTTTCCTTTGTTTCAGGGCGTTATTTCGCCTCTGAGTAGt
tccttttgaaaattgttgaGAAACGGAAAGATGCTCACGACCATTTTTGT
TGGCTTTAATGATAGTTGACAGGATATCACTTGAGTCCTTCCAAGATAAA
AATTTCACACTGATTGACGGAAATGAGTTTCGATTACGATCATTGGTCAC
TCTATTTTGTTTAAAGTTGCGGTGACCTCGTTCAACGGCATTCTTTATAT
ATTCTGTTCCAAGGGTGGGACAGTGACTGTTTATGGTATTTGCTAATAGG
TCTATCGTTTTGTTGGCATCGGTTTCGGATTGTGGGTCATATTTAACGTT
GCGGAAAATCAGGGTGAACCGTAGTGTCCTATCAATTTGTTCTTCTTGGT
GATCTTCAAGACTCACCACTTTGTTGATGAGTTGCTGGAGTTGTTTATTT
ACGTTTGGTTTGTTGGGTTCGGCATCAGCTTCAGGATTGGCATCATTATA
ACTATCAGCCCATGGATGTTTCACCTGAGCTTCAAGTTCATTTATCTTGT
TATGGAGAGCTGTTATTTTTTCATCATATTCAGTTCTAAGTtcatgtatt
ttgttgttgatatAGATCTTGAGACCATCAAGTTTGTTGTCCAAGGTATT
GATGATGTCATTTTTGAAGGTTTCAAATTCCATGGTTGAATTGGTTGAAA
GAGCAGAAATTAgaaggaaaaataaatattgtaTTGTTGTAGGTTCAGTT
GAAGTACTTCTTGGTTGATTTGTTTGAGAGATTGAAGAGATAGATGGAGA
TTTGTTGTTAAAATTGATATTAGATTCCCTTTTCAGCTTCAGAGCATCCT
CACCActcgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062647-exon-scaffold_370-1491911889:26231..27249 | TCONS_00062647-exon-scaffold_370-1491911889:26231..27249 | Clytia hemisphaerica | exon |
| TCONS_00062647-exon-scaffold_370-1510915933:26231..27249 | TCONS_00062647-exon-scaffold_370-1510915933:26231..27249 | Clytia hemisphaerica | exon |
| TCONS_00062647-exon-scaffold_370-1575043694:26231..27249 | TCONS_00062647-exon-scaffold_370-1575043694:26231..27249 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_370 | supercontig | scaffold_370:26231..27249 . |
Blast
The following BLAST results are available for this feature:
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