TCONS_00062639 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062639
Unique NameTCONS_00062639
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length792

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062639 ID=TCONS_00062639|Name=TCONS_00062639|organism=Clytia hemisphaerica|type=transcript|length=792bp
CCTCCCTTGAAATCTTGATTATCGATTTTCTATCGATTACCGGAATCAAT
CGATATCCAACCCATCGATTGGGAAAAGTTATCGATTGTATCGAGTGGAA
GAGTCTGGTAAAGATGAGCACAAGTATAACCTAAACATTCCTGATCGTAT
GATGCCAGTTCGAGTACATACGAAATACCAAGTTACTATCAAGTACACCC
ATCCTTGGCTCCTAAACGGTGAGCGATTTTTATTGATATAATTTCCGAGC
TTTGCAAGGACACTCCGTCGCCCGTAGAATACAAGCATGACAGGGACGAC
ATATTGAATAACAGCTCCGGCATACGTTCCCGTAATACTGACCAACATTT
CGACGTCATCAGTAGCAAAAGCGATAATAATGGGCGGGATAATAACGGCC
AGCGGGAACAAGAAACGGCGTACAAACAAACCGTaatatttgttttcttt
gagGAACAGATTCTTTAGATTCTCACGTAACGTAATTGCAATGATCGGGA
AATTTGTACTCAGTGTGAAAGTGGGAAAAAGCTctaaaaagtatttcaaa
acgTCGGGAGCATCCGTAAAACTTAACGTGTACAGATCCTTCAAATCGTC
AACCTTAAACGCGAAGACAGCCGTCGTGACGAGTaacatgtagaaaaaaa
atacgGCAACAAAATCACCAAACAGGACGTAAAGAATACGGCGTTTGTTT
GTGACGGGTGTAATGATTGACGGTAAGGAATGGTGACACATAAATGAATA
CACAGCAACGCCAAAGAAGTTTGGTAATGCGTTGAATTCGAA
Run BLAST on NCBI

transcript from alignment at scaffold_370:171174..172257-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062639 ID=TCONS_00062639|Name=TCONS_00062639|organism=Clytia hemisphaerica|type=transcript|length=1084bp|location=Sequence derived from alignment at scaffold_370:171174..172257- (Clytia hemisphaerica)
CCTCCCTTGAAATCTTGATTATCGATTTTCTATCGATTACCGGAATCAAT
CGATATCCAACCCATCGATTGGGAAAAGTTATCGATTGTATCGAGTGGAA
GAGTCTGGTAAAGATGAGCACAAGTATAACCTAAACATTCCTGATCGTAT
GATGCCAGTTCGAGTACATACCCATTCGTGTTCTGGTGCGTTATTAAGTG
TCTTGTGTACTGGCTATACCAAAGTAACTATATCAGTTGAGTTGAAAATA
ATTTAGAATTGCATGCTACATAAACTTTCCATAATTCCTATGCGTGTATA
TCCAATGTTTATGTGATATCATAATTCATAAAGAGGATACTAAGTCAGTA
ATGCTTGACATTATAAGCATAGTGAGCAGTGCTAACAATCGTTTGTGTGT
ACAAAAATAAGCACATCACTTAAATTTATAGAATTTATTGACAGTTACAA
AAACAGTACATACGAAATACCAAGTTACTATCAAGTACACCCATCCTTGG
CTCCTAAACGGTGAGCGATTTTTATTGATATAATTTCCGAGCTTTGCAAG
GACACTCCGTCGCCCGTAGAATACAAGCATGACAGGGACGACATATTGAA
TAACAGCTCCGGCATACGTTCCCGTAATACTGACCAACATTTCGACGTCA
TCAGTAGCAAAAGCGATAATAATGGGCGGGATAATAACGGCCAGCGGGAA
CAAGAAACGGCGTACAAACAAACCGTAATATTTGTTTTCTTTGAGGAACA
GATTCTTTAGATTCTCACGTAACGTAATTGCAATGATCGGGAAATTTGTA
CTCAGTGTGAAAGTGGGAAAAAGCTCTAAAAAGTATTTCAAAACGTCGGG
AGCATCCGTAAAACTTAACGTGTACAGATCCTTCAAATCGTCAACCTTAA
ACGCGAAGACAGCCGTCGTGACGAGTAACATGTAGAAAAAAAATACGGCA
ACAAAATCACCAAACAGGACGTAAAGAATACGGCGTTTGTTTGTGACGGG
TGTAATGATTGACGGTAAGGAATGGTGACACATAAATGAATACACAGCAA
CGCCAAAGAAGTTTGGTAATGCGTTGAATTCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039255XLOC_039255Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062639-exon-scaffold_370-1575043694:172091..172257TCONS_00062639-exon-scaffold_370-1575043694:172091..172257Clytia hemisphaericaexon
TCONS_00062639-exon-scaffold_370-1575043694:171174..171798TCONS_00062639-exon-scaffold_370-1575043694:171174..171798Clytia hemisphaericaexon
TCONS_00062639-exon-scaffold_370-1510915933:172091..172257TCONS_00062639-exon-scaffold_370-1510915933:172091..172257Clytia hemisphaericaexon
TCONS_00062639-exon-scaffold_370-1510915933:171174..171798TCONS_00062639-exon-scaffold_370-1510915933:171174..171798Clytia hemisphaericaexon
TCONS_00062639-exon-scaffold_370-1491911889:172091..172257TCONS_00062639-exon-scaffold_370-1491911889:172091..172257Clytia hemisphaericaexon
TCONS_00062639-exon-scaffold_370-1491911889:171174..171798TCONS_00062639-exon-scaffold_370-1491911889:171174..171798Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_370supercontigscaffold_370:171174..172257 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.3649	13.2024	9.77437	9.20671	5.33754	4.18367	6.01727	7.02369	7.78421	6.9779	12.6827	9.43171	8.75283	10.41	11.7689	13.0661	7.1604	9.03546	12.2433	13.1256	7.22999	7.24509	7.77069	9.55185	15.0471	16.2937	6.99459	9.11545	8.84518	11.0091
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013057AA_transpt_TM
Blast
[Close]
BLAST of TCONS_00062639 vs. Swiss-Prot (Human)
Match: TM104 (Transmembrane protein 104 OS=Homo sapiens GN=TMEM104 PE=1 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 6.246e-55
Identity = 106/213 (49.77%), Postives = 141/213 (66.20%), Query Frame = -1 
Query:  166 EFNALPNFFGVAVYSFMCHHSLPSIITPVTNKRRILYVLFGDFVAVFFFYMLLVTTAVFAFKVDDLKDLYTLSFTDAPDV----LKYFLELFPTFTLSTNFPIIAITLRENLKNLFLKENKYYGLFVRRXXXXXXXXXXXXXXXXATDDVEMLVSITGTYAGAVIQYVVPVMLVFYGRRSVLAKLGNYI-NKNRSPFRSQGWVYLIVTWYFVC 789
            +F+ + N FGV VYSFMC HSLPS+ITPV++KR +  ++F D+V +  FY LL  TA+F F+ D L D+YTL+F     V    +++FL LFP FT+STNFPIIA+TLR N K LF +E   Y   V R +FP   ++PP+++AF T D+E LV ITG YAG  IQYV+P  LV++ RR      G  + NK+RSPFR   WV  ++ W F C
Sbjct:  269 DFSGVRNLFGVCVYSFMCQHSLPSLITPVSSKRHLTRLVFLDYVLILAFYGLLSFTAIFCFRGDSLMDMYTLNFARCDVVGLAAVRFFLGLFPVFTISTNFPIIAVTLRNNWKTLFHREGGTYPWVVDRVVFPTITLVPPVLVAFCTHDLESLVGITGAYAGTGIQYVIPAFLVYHCRRDTQLAFGCGVSNKHRSPFRHTFWVGFVLLWAFSC 481
The following BLAST results are available for this feature:
BLAST of TCONS_00062639 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM1046.246e-5549.77Transmembrane protein 104 OS=Homo sapiens GN=TMEM1... [more]
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