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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062813 ID=TCONS_00062813|Name=TCONS_00062813|organism=Clytia hemisphaerica|type=transcript|length=676bp
TTttagagaaaatcaaaaaagaaatggCTCGTCTCTTTTTGGTTCATTTA
GTTTGCTTACTACTCCTCTTCGTCATTGACGTCAGTGACGGCCGACATGA
AATGAGCCGACATTGTCTTACCAAAGGACATCGTGGTTCCAAATCTTACA
CACTGACATTATGTTCGTACTGTGCAGTAACTTATGACCATGGGGTTAAC
GTtttcccACGAAGGACTGTTGAATTTGAATGTAAAGAAGACCAAAATCT
TCATGGTACTTGTCTTAGTGGTGAAGGCTATTGTCTCCAGAAAAGTGTTG
TTATTCCTCTTCGTAAGACAAAGCCTGATGGAAGCACAGAAGATAAGGAT
TATGAAATGATGACTGCATGTCAATGTGAATGTGGAAGCGAATCTTATTT
GGCTAATTTTATAAAACAATAGAACAATTTTGCAGGGATACAGTATATTT
GTCAGTAGTTATTTACTTACTTAATGAAATAGTCAGATcatcataatcga
tgacgtcataaaaactaaaaattgaatttctcaagttTGATTATCCAatc
gtcttcaaactttcaccaaagatgtatcggATGTATCTCACTAAGTTCGA
Tcatttgaagataaaaaattcgaaattctgattacgtcagcaaaaaatag
ggtttttctttttttcccaaTTCCTG Run BLAST on NCBI protein sequence of TCONS_00062813-protein >TCONS_00062813-protein ID=TCONS_00062813-protein|Name=TCONS_00062813-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
LEKIKKEMARLFLVHLVCLLLLFVIDVSDGRHEMSRHCLTKGHRGSKSYT
LTLCSYCAVTYDHGVNVFPRRTVEFECKEDQNLHGTCLSGEGYCLQKSVV
IPLRKTKPDGSTEDKDYEMMTACQCECGSESYLANFIKQ Run BLAST on NCBI transcript from alignment at scaffold_372:107549..110018- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062813 ID=TCONS_00062813|Name=TCONS_00062813|organism=Clytia hemisphaerica|type=transcript|length=2470bp|location=Sequence derived from alignment at scaffold_372:107549..110018- (Clytia hemisphaerica)
TTTTAGAGAAAATCAAAAAAGAAATGGCTCGTCTCTTTTTGGTAAGTTTA
GAGCGTAAAATTGACTGAAAATTGATCTCGTTAAGTCATTTGTACGGAAT
ATATGCTGTTCTTTACCAGGTGACGGGTTTCTCTTTGAAAGTGACTAGAC
GTTTTTTATAAGAACAAACAATATAAGAACATAAAGCTTTTGATCTGGGG
TAATTCAAAAACCTCAGTAAAAGCATGGATTTATCATAGAACTCTGGATA
CACAACGAGCTAGTTTTTTCATCGATTTCTCATGTTCTAGCCTTGTCCGC
AGTAATGAGATTATTGTTCACCCTCCTCCATTCACTAATAATTTTTCGTA
AATTTTTTTTATTGCATTTTTCATCAAAACACAGCTATACAATTCCCAAA
TGAGACTTAAAGATCTCTCAAGAGAGTCAAATGCATCAAAGATTTTCAAA
TCACTATGAAGCCAAGATACTCCAGTCTAACATATGTCAATCCTAGCTCT
TCCCAGGAAAAAATTGGAAAGATATTGCCAACCTTATTTTCAGCGTTATT
CTAGGCTTTTTACTCAATTTTTCTTGTTTGATGAAGTTTTTTTCACATTT
AATTTCATAAATGTATTCGTTAAGCTTTCTTGCTTTCATTTTCAAAGTTG
CATCGGGTAAATATACAAAAACAAGAGGTTACAGGACTTTTTAGAAATGG
GATTATTAATCATTTTTCAAAATCAGGGACCTTCGAGCCGCCATGACAGT
TGTCCTTAGCGGACAAAGCTAGAACATTGATTGTTTTCTGAAAGAATGGA
AATACAATGGTCGCTCTCCACCGTTTTATTTGATGTTTATCCAGAGCTCT
ATGATAAATCCACGGTAAAAGTTTGCGAGGTGACGGTTGTATCCAAGCCA
AAAATCGAAAATCGACCCTTTGAGAGAAAAGTTTTTTTCGAGACCCTTTG
AGATTTTTAGTGATTATTCAGACTCTTTGAGAGACTAATCCATGAAATTG
TACCTCTTTGAAGGAAGTTTTGAGGTATGAAACGTGGTACGCTTATGACT
CGCACATACCCGTAAATTTTTTTGCCTCAATACCAACCCCCACCGGGGTA
AAAGCCTAATATCTCTTTTCTTTCTAGGTTCATTTAGTTTGCTTACTACT
CCTCTTCGTCATTGACGTCAGTGACGGCCGACATGAAATGAGCCGACATT
GTCTTACCAAAGGACATCGTGGTTCCAAATCTTACACACTGACATTATGT
TCGTACTGTGCAGTAACTTATGACCATGGGGTTAACGTGTAAGTTACAAT
GAGATACATCCGACTTTCTCCTAAATTCGAACCTATATTATTCAAATATT
TCTATTTCAGTTTTCGCGTACTAAACTATTAGTCCCCTCAGCTAAGTGGT
TTAAATTACTCTCTGTATATCGAAACTTTCTGTAATTCGAAGAAAGTTTT
TTAGCCCTTGATGATCGATTATATCCTATGTGGGATTGAAAATTGCGCAG
ATCGCGTGAAGACAGAAAATAATATTAACCGCCAAATATCGAAAGATTAA
TAACAGGAAAACAAAGGTAGCATTAGATTCAATATTATATATGTGGTAGT
TGGTTTCCTTTAACCAATGTTGTCTCTTTAAATGCTTTGTTTTTAAAAAA
GAGTGATATTGTTTGCTTACTCATCAATTTTAATTTACAAGCTATTCTCC
ACCGGTGTTGCAGGCGTTGTTGTTTGCAATTTTTAAAGGTTTTGTTTTTA
AATAAGAACGCAAGCTTTTTCACATTGGATTAACAAGGATGTGGAGCAAG
ATTGATCAGAAAGAGAAAAAGAAAAACTATTTTTTGCTTACATCATCATA
ATATAACAATAGGCAGACATGTCCTGATATGAAATATGTGTCTGATATGA
CTGGAACACTTATGTAAAAATAAAACCTTTAAGGGTCTCTTTAGTAGTAA
GCCGGCTTCTGGAATAATTCTTTAACGATTTTACATTTTTTTTCAGTTTC
CCACGAAGGACTGTTGAATTTGAATGTAAAGAAGACCAAAATCTTCATGG
TACTTGTCTTAGTGGTGAAGGCTATTGTCTCCAGAAAAGTGTTGTTATTC
CTCTTCGTAAGACAAAGCCTGATGGAAGCACAGAAGATAAGGATTATGAA
ATGATGACTGCATGTCAATGTGAATGTGGAAGCGAATCTTATTTGGCTAA
TTTTATAAAACAATAGAACAATTTTGCAGGGATACAGTATATTTGTCAGT
AGTTATTTACTTACTTAATGAAATAGTCAGATCATCATAATCGATGACGT
CATAAAAACTAAAAATTGAATTTCTCAAGTTTGATTATCCAATCGTCTTC
AAACTTTCACCAAAGATGTATCGGATGTATCTCACTAAGTTCGATCATTT
GAAGATAAAAAATTCGAAATTCTGATTACGTCAGCAAAAAATAGGGTTTT
TCTTTTTTTCCCAATTCCTG Coding sequence (CDS) from alignment at scaffold_372:107549..110018- >TCONS_00062813 ID=TCONS_00062813|Name=TCONS_00062813|organism=Clytia hemisphaerica|type=CDS|length=1260bp|location=Sequence derived from alignment at scaffold_372:107549..110018- (Clytia hemisphaerica)
TTTCCCACGAAGGACTGTTGAATTTGAATGTAAAGAAGACCAAAATCTTC
ATGGTACTTGTCTTAGTGGTGAAGGCTATTGTCTCCAGAAAAGTGTTGTT
ATTCCTCTTCGTAAGACAAAGCCTGATGGAAGCACAGAAGATAAGGATTA
TGAAATGATGACTGCATGTCAATGTGAATGTGGAAGCGAATCTTATTTGG
CTAATTTTATAAAACAATAGGTTCATTTAGTTTGCTTACTACTCCTCTTC
GTCATTGACGTCAGTGACGGCCGACATGAAATGAGCCGACATTGTCTTAC
CAAAGGACATCGTGGTTCCAAATCTTACACACTGACATTATGTTCGTACT
GTGCAGTAACTTATGACCATGGGGTTAACGTTTAGAGAAAATCAAAAAAG
AAATGGCTCGTCTCTTTTTGTTTCCCACGAAGGACTGTTGAATTTGAATG
TAAAGAAGACCAAAATCTTCATGGTACTTGTCTTAGTGGTGAAGGCTATT
GTCTCCAGAAAAGTGTTGTTATTCCTCTTCGTAAGACAAAGCCTGATGGA
AGCACAGAAGATAAGGATTATGAAATGATGACTGCATGTCAATGTGAATG
TGGAAGCGAATCTTATTTGGCTAATTTTATAAAACAATAGGTTCATTTAG
TTTGCTTACTACTCCTCTTCGTCATTGACGTCAGTGACGGCCGACATGAA
ATGAGCCGACATTGTCTTACCAAAGGACATCGTGGTTCCAAATCTTACAC
ACTGACATTATGTTCGTACTGTGCAGTAACTTATGACCATGGGGTTAACG
TTTAGAGAAAATCAAAAAAGAAATGGCTCGTCTCTTTTTGTTTCCCACGA
AGGACTGTTGAATTTGAATGTAAAGAAGACCAAAATCTTCATGGTACTTG
TCTTAGTGGTGAAGGCTATTGTCTCCAGAAAAGTGTTGTTATTCCTCTTC
GTAAGACAAAGCCTGATGGAAGCACAGAAGATAAGGATTATGAAATGATG
ACTGCATGTCAATGTGAATGTGGAAGCGAATCTTATTTGGCTAATTTTAT
AAAACAATAGGTTCATTTAGTTTGCTTACTACTCCTCTTCGTCATTGACG
TCAGTGACGGCCGACATGAAATGAGCCGACATTGTCTTACCAAAGGACAT
CGTGGTTCCAAATCTTACACACTGACATTATGTTCGTACTGTGCAGTAAC
TTATGACCATGGGGTTAACGTTTAGAGAAAATCAAAAAAGAAATGGCTCG
TCTCTTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062813-exon-scaffold_372-1575043694:109978..110018 | TCONS_00062813-exon-scaffold_372-1575043694:109978..110018 | Clytia hemisphaerica | exon |
| TCONS_00062813-exon-scaffold_372-1575043694:108731..108891 | TCONS_00062813-exon-scaffold_372-1575043694:108731..108891 | Clytia hemisphaerica | exon |
| TCONS_00062813-exon-scaffold_372-1575043694:107549..108022 | TCONS_00062813-exon-scaffold_372-1575043694:107549..108022 | Clytia hemisphaerica | exon |
| TCONS_00062813-exon-scaffold_372-1510915933:109978..110018 | TCONS_00062813-exon-scaffold_372-1510915933:109978..110018 | Clytia hemisphaerica | exon |
| TCONS_00062813-exon-scaffold_372-1510915933:108731..108891 | TCONS_00062813-exon-scaffold_372-1510915933:108731..108891 | Clytia hemisphaerica | exon |
| TCONS_00062813-exon-scaffold_372-1510915933:107549..108022 | TCONS_00062813-exon-scaffold_372-1510915933:107549..108022 | Clytia hemisphaerica | exon |
| TCONS_00062813-exon-scaffold_372-1491911889:109978..110018 | TCONS_00062813-exon-scaffold_372-1491911889:109978..110018 | Clytia hemisphaerica | exon |
| TCONS_00062813-exon-scaffold_372-1491911889:108731..108891 | TCONS_00062813-exon-scaffold_372-1491911889:108731..108891 | Clytia hemisphaerica | exon |
| TCONS_00062813-exon-scaffold_372-1491911889:107549..108022 | TCONS_00062813-exon-scaffold_372-1491911889:107549..108022 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_372 | supercontig | scaffold_372:107549..110018 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029034 | Cystine-knot_cytokine |
Blast
The following BLAST results are available for this feature:
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