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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062996 ID=TCONS_00062996|Name=TCONS_00062996|organism=Clytia hemisphaerica|type=transcript|length=1114bp
GTTTGACTTTCACAGACTAACATTCTGGTAACTGTATATATTTGCCTGGC
ATTTTTATTCTTGATCTCAATATGGGTACGAACAGTGACAATTTTACGTT
TTGTCACCAATTACCAGTCATCGTCGGGAACTCGACGTTTTGTGGTCTAA
AGAATAAATGGACATCTCGTTTCAGTGAGCCTACTTTGTTGGCAATGACT
ATTATCCCGACAGCAATATATTGGATGGTTTTACTTGCTTTTGTCAAAAC
TTTGTACAAAACATTGATGGAATTCAGAGGAAAGAGCTTAGAAGAAGCTC
ATCTATATTATAAAAACGTTTTATGTCATTGCCGATGTTGCAATCTCTAC
ACGGACGATGATCTATTAAATGCTAAGTTGTATATTTCGATTGTTCTTAT
TCCACTGTTTAAATACTTCTGGGATGCAATCGATCTAACATTTGATGTTT
ACATTTTCTATCAGTTGGAGAAAGGAAACGTTCTTGATAACGTGATCTAT
CGAAACGAGAACGTTAACAATTCAATCTACGGTTTTGCCCTTCTCGGATG
TATATGTAAAGTATTCACTTGGAAGTTTTTCCAACATTTAGTTAAAAAAA
GGAGTCGtggttttgatgaaattttgttcCTTCAAGTGAAAAACATGGTG
CTAATGGCAAGTTTTATTTTCGAAGACGGTCCCGAAAtgattttggaata
tttttataTCGAAAAATACATCACTTCCTTATCGTGGTTGTTGCTGGTTA
AAGACGTCTTTATTGGTATTGTGGCAATCAGTACTTGCTTTAGTACATTG
ATCTTTATACGTAAATCTTGACACGCTTAACATCTTTAGAGCAAAAACCC
ACGGCTTCACAcgtctttttttgtattttagttTTATCATTTacaatttc
aaatgttttgagagTTGGCGGTGCATGTTATCAATATATcaccaaaaaat
tgaaaagttccTGCTTTGTTGCCGAGAATGGTGTTATTTTACAAGCTCCG
TTTACTGTTGGATGTTTGCGtgaaattgattattttatcaTTGTTATGGC
TGGAATACCATTGGTTTTATTCGCGTATGCATTTTTGATgaactttcttt
tgttttggatgAGG Run BLAST on NCBI protein sequence of TCONS_00062996-protein >TCONS_00062996-protein ID=TCONS_00062996-protein|Name=TCONS_00062996-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
MGTNSDNFTFCHQLPVIVGNSTFCGLKNKWTSRFSEPTLLAMTIIPTAIY
WMVLLAFVKTLYKTLMEFRGKSLEEAHLYYKNVLCHCRCCNLYTDDDLLN
AKLYISIVLIPLFKYFWDAIDLTFDVYIFYQLEKGNVLDNVIYRNENVNN
SIYGFALLGCICKVFTWKFFQHLVKKRSRGFDEILFLQVKNMVLMASFIF
EDGPEMILEYFYIEKYITSLSWLLLVKDVFIGIVAISTCFSTLIFIRKS Run BLAST on NCBI transcript from alignment at scaffold_375:127109..128222 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062996 ID=TCONS_00062996|Name=TCONS_00062996|organism=Clytia hemisphaerica|type=transcript|length=1114bp|location=Sequence derived from alignment at scaffold_375:127109..128222 (Clytia hemisphaerica)
CCTcatccaaaacaaaagaaagttcATCAAAAATGCATACGCGAATAAAA
CCAATGGTATTCCAGCCATAACAAtgataaaataatcaatttcaCGCAAA
CATCCAACAGTAAACGGAGCTTGTAAAATAACACCATTCTCGGCAACAAA
GCAggaacttttcaattttttggtgATATATTGATAACATGCACCGCCAA
ctctcaaaacatttgaaattgtAAATGATAAaactaaaatacaaaaaaag
acgTGTGAAGCCGTGGGTTTTTGCTCTAAAGATGTTAAGCGTGTCAAGAT
TTACGTATAAAGATCAATGTACTAAAGCAAGTACTGATTGCCACAATACC
AATAAAGACGTCTTTAACCAGCAACAACCACGATAAGGAAGTGATGTATT
TTTCGAtataaaaatattccaaaatcaTTTCGGGACCGTCTTCGAAAATA
AAACTTGCCATTAGCACCATGTTTTTCACTTGAAGgaacaaaatttcatc
aaaaccaCGACTCCTTTTTTTAACTAAATGTTGGAAAAACTTCCAAGTGA
ATACTTTACATATACATCCGAGAAGGGCAAAACCGTAGATTGAATTGTTA
ACGTTCTCGTTTCGATAGATCACGTTATCAAGAACGTTTCCTTTCTCCAA
CTGATAGAAAATGTAAACATCAAATGTTAGATCGATTGCATCCCAGAAGT
ATTTAAACAGTGGAATAAGAACAATCGAAATATACAACTTAGCATTTAAT
AGATCATCGTCCGTGTAGAGATTGCAACATCGGCAATGACATAAAACGTT
TTTATAATATAGATGAGCTTCTTCTAAGCTCTTTCCTCTGAATTCCATCA
ATGTTTTGTACAAAGTTTTGACAAAAGCAAGTAAAACCATCCAATATATT
GCTGTCGGGATAATAGTCATTGCCAACAAAGTAGGCTCACTGAAACGAGA
TGTCCATTTATTCTTTAGACCACAAAACGTCGAGTTCCCGACGATGACTG
GTAATTGGTGACAAAACGTAAAATTGTCACTGTTCGTACCCATATTGAGA
TCAAGAATAAAAATGCCAGGCAAATATATACAGTTACCAGAATGTTAGTC
TGTGAAAGTCAAAC Coding sequence (CDS) from alignment at scaffold_375:127109..128222 >TCONS_00062996 ID=TCONS_00062996|Name=TCONS_00062996|organism=Clytia hemisphaerica|type=CDS|length=750bp|location=Sequence derived from alignment at scaffold_375:127109..128222 (Clytia hemisphaerica)
TCAAGATTTACGTATAAAGATCAATGTACTAAAGCAAGTACTGATTGCCA
CAATACCAATAAAGACGTCTTTAACCAGCAACAACCACGATAAGGAAGTG
ATGTATTTTTCGAtataaaaatattccaaaatcaTTTCGGGACCGTCTTC
GAAAATAAAACTTGCCATTAGCACCATGTTTTTCACTTGAAGgaacaaaa
tttcatcaaaaccaCGACTCCTTTTTTTAACTAAATGTTGGAAAAACTTC
CAAGTGAATACTTTACATATACATCCGAGAAGGGCAAAACCGTAGATTGA
ATTGTTAACGTTCTCGTTTCGATAGATCACGTTATCAAGAACGTTTCCTT
TCTCCAACTGATAGAAAATGTAAACATCAAATGTTAGATCGATTGCATCC
CAGAAGTATTTAAACAGTGGAATAAGAACAATCGAAATATACAACTTAGC
ATTTAATAGATCATCGTCCGTGTAGAGATTGCAACATCGGCAATGACATA
AAACGTTTTTATAATATAGATGAGCTTCTTCTAAGCTCTTTCCTCTGAAT
TCCATCAATGTTTTGTACAAAGTTTTGACAAAAGCAAGTAAAACCATCCA
ATATATTGCTGTCGGGATAATAGTCATTGCCAACAAAGTAGGCTCACTGA
AACGAGATGTCCATTTATTCTTTAGACCACAAAACGTCGAGTTCCCGACG
ATGACTGGTAATTGGTGACAAAACGTAAAATTGTCACTGTTCGTACCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062996-exon-scaffold_375-1491911889:127109..128222 | TCONS_00062996-exon-scaffold_375-1491911889:127109..128222 | Clytia hemisphaerica | exon |
| TCONS_00062996-exon-scaffold_375-1510915933:127109..128222 | TCONS_00062996-exon-scaffold_375-1510915933:127109..128222 | Clytia hemisphaerica | exon |
| TCONS_00062996-exon-scaffold_375-1575043694:127109..128222 | TCONS_00062996-exon-scaffold_375-1575043694:127109..128222 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_375 | supercontig | scaffold_375:127109..128222 . |
Blast
The following BLAST results are available for this feature:
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